ClCG04G002730 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G002730
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon gag protein
LocationCG_Chr04 : 9735179 .. 9735886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGAGATAATACTAACCTCCTCCCTCTTGATCCCGAGATTGAAAGGAGGTGTAGAAGAAATTTAAGAGTTGAACTTAATCAAACTACGGAGATGGCGAAGGAGATACCTAAGGCAATTAGAGACTACTTTCAACCTACGTTACGGGCAAGTCAACCCGGAATAATGAATGTGCCAATCAATGTCAACAATTTTGAGTTGAAACCGGGGTTGATCCAAATGGCTAGAGAGCTGGCCTTTAGAGGAAGAACTAATGAAAATCCTCACAAGCACTTGCGATCCTTCTTGGAGATATGCGGAACGGTAAAAATGAATGGTGTTTCTAACGATGCAATTAAACTAAGATTGTTTCCTTTTTCTTTGCAGGACCGTGCTAAGGATTGGTTGGAAACCATCCCTCCGGATAGTATTACAACATGGGAGATCTTAGCTCAAGCTTTCTTGAACAAATATTTTCCACCGGCTAAATCTCAAAGACTAAGGACGGAGATTGGAACATTCCGCCAACTCGAGGATGAACAACTATATGAGGCTTGGGAGAGGTATAAGGATCTCTTGAGAAGGTGCCCTCAACATGGGTTTCCGGATTGGTTGCAAATTCAACTCTTCTACAATGGATTGGCAAGTTTAACCAAATCCATCTTAGATGCAACCGCTGGAGGGTCAATTTTTTCAAAGAATGCTCAAGAAGCCTATACCATATAG

mRNA sequence

ATGCCTGGAGATAATACTAACCTCCTCCCTCTTGATCCCGAGATTGAAAGGAGGTGTAGAAGAAATTTAAGAGTTGAACTTAATCAAACTACGGAGATGGCGAAGGAGATACCTAAGGCAATTAGAGACTACTTTCAACCTACGTTACGGGCAAGTCAACCCGGAATAATGAATGTGCCAATCAATGTCAACAATTTTGAGTTGAAACCGGGGTTGATCCAAATGGCTAGAGAGCTGGCCTTTAGAGGAAGAACTAATGAAAATCCTCACAAGCACTTGCGATCCTTCTTGGAGATATGCGGAACGGTAAAAATGAATGGTGTTTCTAACGATGCAATTAAACTAAGATTGTTTCCTTTTTCTTTGCAGGACCGTGCTAAGGATTGGTTGGAAACCATCCCTCCGGATAGTATTACAACATGGGAGATCTTAGCTCAAGCTTTCTTGAACAAATATTTTCCACCGGCTAAATCTCAAAGACTAAGGACGGAGATTGGAACATTCCGCCAACTCGAGGATGAACAACTATATGAGGCTTGGGAGAGGTATAAGGATCTCTTGAGAAGGTGCCCTCAACATGGGTTTCCGGATTGGTTGCAAATTCAACTCTTCTACAATGGATTGGCAAGTTTAACCAAATCCATCTTAGATGCAACCGCTGGAGGGTCAATTTTTTCAAAGAATGCTCAAGAAGCCTATACCATATAG

Coding sequence (CDS)

ATGCCTGGAGATAATACTAACCTCCTCCCTCTTGATCCCGAGATTGAAAGGAGGTGTAGAAGAAATTTAAGAGTTGAACTTAATCAAACTACGGAGATGGCGAAGGAGATACCTAAGGCAATTAGAGACTACTTTCAACCTACGTTACGGGCAAGTCAACCCGGAATAATGAATGTGCCAATCAATGTCAACAATTTTGAGTTGAAACCGGGGTTGATCCAAATGGCTAGAGAGCTGGCCTTTAGAGGAAGAACTAATGAAAATCCTCACAAGCACTTGCGATCCTTCTTGGAGATATGCGGAACGGTAAAAATGAATGGTGTTTCTAACGATGCAATTAAACTAAGATTGTTTCCTTTTTCTTTGCAGGACCGTGCTAAGGATTGGTTGGAAACCATCCCTCCGGATAGTATTACAACATGGGAGATCTTAGCTCAAGCTTTCTTGAACAAATATTTTCCACCGGCTAAATCTCAAAGACTAAGGACGGAGATTGGAACATTCCGCCAACTCGAGGATGAACAACTATATGAGGCTTGGGAGAGGTATAAGGATCTCTTGAGAAGGTGCCCTCAACATGGGTTTCCGGATTGGTTGCAAATTCAACTCTTCTACAATGGATTGGCAAGTTTAACCAAATCCATCTTAGATGCAACCGCTGGAGGGTCAATTTTTTCAAAGAATGCTCAAGAAGCCTATACCATATAG

Protein sequence

MPGDNTNLLPLDPEIERRCRRNLRVELNQTTEMAKEIPKAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNENPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILDATAGGSIFSKNAQEAYTI
Homology
[Close]
BLAST of ClCG04G002730 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 100/204 (49.02%), Postives = 142/204 (69.61%), Query Frame = 1 

Query: 33  MAKEIPKAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELA-FRGRTNENPHK 92
           +A +  +AIR+Y  P      PGI+   I    FELKP + QM + +  F G   E+PH 
Sbjct: 15  LADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHL 74

Query: 93  HLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNK 152
           HLRSFLE+  + K+ GVS + ++L+LFPFSL+DRA+ WL T+PPDS+T W  LA+ FL K
Sbjct: 75  HLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRK 134

Query: 153 YFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASL 212
           YFPP ++ + R+EI +F+QLEDE   +AWER+K+LLR+CP HG P  +Q++ FYNGL + 
Sbjct: 135 YFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAA 194

Query: 213 TKSILDATAGGSIFSKNAQEAYTI 236
           ++ +LDA+A G+I SK+  EA+ I
Sbjct: 195 SRMVLDASANGAILSKSYNEAFEI 218

[Close]
BLAST of ClCG04G002730 vs. TrEMBL
Match: A0A151T4H0_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_016461 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.8e-42
Identity = 88/208 (42.31%), Postives = 128/208 (61.54%), Query Frame = 1 

Query: 26  ELNQTTEMAKEIPK-AIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELAFRGR 85
           E+ +  EM +E P+  + D+   T       I    I   NFE+KP L+ + +   F   
Sbjct: 21  EILEEVEMGEERPRITLGDHAAATSTTHFSSIATPTITATNFEMKPALLNLIQNNQFMSL 80

Query: 86  TNENPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEIL 145
            +E+P+ HL++F+E+CGTVK++ V  D I +++FPFSL  +AK WL  +P  S+T W  +
Sbjct: 81  DHEDPYLHLQTFIELCGTVKIHQVLEDVIWMKMFPFSLLGKAKTWLNALPHQSLTRWSDI 140

Query: 146 AQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLF 205
              F+ ++FP AK  + ++EI TF Q +DE L+EAWERYK LLRRCP HGF D  Q+ +F
Sbjct: 141 ETKFVARFFPLAKINQAKSEIVTFSQKQDELLFEAWERYKSLLRRCPSHGFDDLTQVNIF 200

Query: 206 YNGLASLTKSILDATAGGSIFSKNAQEA 233
             GL    K +LDA+AGGS+  K  +EA
Sbjct: 201 LGGLQPRVKILLDASAGGSMRFKTPEEA 228

[Close]
BLAST of ClCG04G002730 vs. TrEMBL
Match: A0A151UDN3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048874 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-41
Identity = 103/256 (40.23%), Postives = 133/256 (51.95%), Query Frame = 1 

Query: 12  DPEIERRCRRN------LRVELNQTTEMAKEIP--------------------------K 71
           DPEIER  RRN       R   N   +    IP                          +
Sbjct: 19  DPEIERTKRRNNSNKRRRRNRANPVGQPTTHIPEVFVYDIPKFTMEGEGGVHNDNQNRRR 78

Query: 72  AIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNENPHKHLRSFLEI 131
            I D F  T       I+   +N    E+K  L+Q+     F G  +E+PH HL  F E+
Sbjct: 79  TIGDAFTYTGPGEFSSIVRPTMNDRLAEMKLALLQLISSHQFSGLDHEDPHTHLYIFYEL 138

Query: 132 CGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKSQ 191
           CG+++++G   +A+ +RLFPFSL  +AK WL + P  S+TTW  +   FL  +FPP+K+ 
Sbjct: 139 CGSIRVSGADEEALFMRLFPFSLNGKAKAWLHSQPNQSLTTWRDVETKFLASFFPPSKNT 198

Query: 192 RLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILDAT 236
             RT I TF Q  DE L EAWERYK LLRRCP HGF   LQ+Q F NGL   TK ILDA+
Sbjct: 199 EARTAIATFAQGADEPLCEAWERYKSLLRRCPNHGFEVELQVQTFCNGLQPQTKMILDAS 258

[Close]
BLAST of ClCG04G002730 vs. TrEMBL
Match: A0A151QRD6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_046325 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.9e-41
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 1 

Query: 67  ELKPGLIQMARELAFRGRTNENPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRA 126
           E+KP L+Q+     F G  +E+PH HL +F E+CG+V ++G   +A+ +RLFPFSL  +A
Sbjct: 7   EIKPALLQLISSHQFSGLDHEDPHTHLYTFYELCGSVGVSGADEEALFMRLFPFSLNGKA 66

Query: 127 KDWLETIPPDSITTWEILAQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDL 186
           K WL + P  S+TTW  +   FL ++FPP+K+   RT I TF Q  DE L EAWERYK +
Sbjct: 67  KAWLHSQPNQSLTTWRDVETKFLARFFPPSKNTEARTAIATFAQGPDEPLCEAWERYKSV 126

Query: 187 LRRCPQHGFPDWLQIQLFYNGLASLTKSILDATAGGSIFSKNAQEAYTI 236
           LRRCP HGF    Q+Q F NGL   TK ILDA+ GGS+  + A+E  TI
Sbjct: 127 LRRCPNHGFEVERQVQTFCNGLQPQTKMILDASFGGSVMFRTAEEVITI 175

[Close]
BLAST of ClCG04G002730 vs. TrEMBL
Match: Q2AA09_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 79/128 (61.72%), Postives = 102/128 (79.69%), Query Frame = 1 

Query: 105 MNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKSQRLRTE 164
           MNGVS+DAIKLRLFPFSL+D+A+ WL+++PP SITTW+ L++AFL KYFPP+K+ +LR +
Sbjct: 1   MNGVSDDAIKLRLFPFSLRDKARAWLQSLPPGSITTWDQLSEAFLAKYFPPSKTAQLRNQ 60

Query: 165 IGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILDATAGGSI 224
           I TF Q E E LY+AWERYKDLLR CP HG  DWL I  FYNGL   T+  +DA AGG++
Sbjct: 61  ITTFTQKEGESLYDAWERYKDLLRMCPHHGLEDWLIIHTFYNGLLYNTRMTVDAAAGGAL 120

Query: 225 FSKNAQEA 233
            +K+ ++A
Sbjct: 121 MNKSVRDA 128

[Close]
BLAST of ClCG04G002730 vs. NCBI nr
Match: gi|672195269|ref|XP_008776509.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera])

HSP 1 Score: 236.5 bits (602), Expect = 4.7e-59
Identity = 107/197 (54.31%), Postives = 144/197 (73.10%), Query Frame = 1 

Query: 39  KAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNENPHKHLRSFLE 98
           + + DY  P +  +QP I+   +N NNFE+KPGLIQM ++  F G   E+P+ HL +FLE
Sbjct: 11  RLLSDYAVPNVNGAQPSIVRPTVNANNFEIKPGLIQMVQQEQFGGGPAEDPYAHLANFLE 70

Query: 99  ICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKS 158
           IC T+KMNGVS+DAI+LRLFPFSL+D+AK WL +  P+S TTW  L+QAFL+KYFPP K+
Sbjct: 71  ICDTIKMNGVSDDAIRLRLFPFSLKDKAKAWLNSKAPNSFTTWNALSQAFLSKYFPPGKT 130

Query: 159 QRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILDA 218
            +LR +I +F Q + E LYEA +R+KDL R+CP HG PDWL +Q FYNGL    +  +DA
Sbjct: 131 AKLRNDITSFAQFDGESLYEASKRFKDLQRKCPHHGLPDWLIVQTFYNGLIHSVRITIDA 190

Query: 219 TAGGSIFSKNAQEAYTI 236
            AGG++ SK+ +EAY +
Sbjct: 191 AAGGTLMSKSTEEAYEL 207

[Close]
BLAST of ClCG04G002730 vs. NCBI nr
Match: gi|950999367|ref|XP_014506495.1| (PREDICTED: uncharacterized protein LOC106766267 [Vigna radiata var. radiata])

HSP 1 Score: 234.2 bits (596), Expect = 2.4e-58
Identity = 110/217 (50.69%), Postives = 153/217 (70.51%), Query Frame = 1 

Query: 17  RRCRRNLRVELNQTTEMAKEIP-KAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQM 76
           R+ +R +  E   +T   ++ P K IRDY  P     Q  I+  PI  NNFE+KP L+Q+
Sbjct: 35  RKEQRRIEQEEETSTMTEEQNPRKTIRDYSMPDPNGYQGSIVRPPIQANNFEIKPALLQV 94

Query: 77  ARELAFRGRTNENPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPP 136
            ++  F G  +E+P+ HL +FL IC T+K NGVS+DAI LRLFPFSL+D+AK+WL+++P 
Sbjct: 95  IQQNQFGGAVSEDPNSHLENFLAICDTLKYNGVSDDAICLRLFPFSLRDKAKNWLQSLPQ 154

Query: 137 DSITTWEILAQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGF 196
            SI+TWE +A  F+ KYFPP+KS ++R EI +F Q ++E LYEAWERYK+L+R+CP H  
Sbjct: 155 GSISTWEDMATXFVTKYFPPSKSAKMRNEITSFVQQDNESLYEAWERYKELMRKCPHHAL 214

Query: 197 PDWLQIQLFYNGLASLTKSILDATAGGSIFSKNAQEA 233
           P+WLQ+Q FYNGL+   K++LDA +GGS   K  +EA
Sbjct: 215 PEWLQVQTFYNGLSPTFKAMLDAASGGSFILKTPEEA 251

[Close]
BLAST of ClCG04G002730 vs. NCBI nr
Match: gi|985458955|ref|XP_015387963.1| (PREDICTED: uncharacterized protein LOC107177920 [Citrus sinensis])

HSP 1 Score: 232.6 bits (592), Expect = 6.8e-58
Identity = 107/198 (54.04%), Postives = 144/198 (72.73%), Query Frame = 1 

Query: 39  KAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELA-FRGRTNENPHKHLRSFL 98
           K +RDY  PT+  ++  I    +  NNFE+KP +IQM + L  F G  N++P+ H+ +FL
Sbjct: 13  KPLRDYVVPTVNGARSSIARPAVQANNFEIKPAIIQMIQTLVQFAGMPNDDPNAHIANFL 72

Query: 99  EICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAK 158
           EIC T K NGVS++AI+LRLFPFS++D+AK+WL ++   +ITTW+ LAQ FL KYFPPAK
Sbjct: 73  EICDTFKQNGVSDNAIRLRLFPFSVRDKAKEWLNSLLAGTITTWDGLAQKFLAKYFPPAK 132

Query: 159 SQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILD 218
           + +LR +I TF Q   E LYEAWERYKDLLR+CP HG P WLQ+Q FYNGL S T++++D
Sbjct: 133 TAKLRNDITTFAQFGMESLYEAWERYKDLLRKCPHHGLPVWLQVQTFYNGLGSNTRTMID 192

Query: 219 ATAGGSIFSKNAQEAYTI 236
           A AGG++  K  + AY +
Sbjct: 193 AAAGGTLMGKTPEAAYEL 210

[Close]
BLAST of ClCG04G002730 vs. NCBI nr
Match: gi|951038589|ref|XP_014517179.1| (PREDICTED: uncharacterized protein LOC106774649 [Vigna radiata var. radiata])

HSP 1 Score: 232.6 bits (592), Expect = 6.8e-58
Identity = 110/219 (50.23%), Postives = 154/219 (70.32%), Query Frame = 1 

Query: 16  ERRCRRNLRVELNQTTEMAKEIP--KAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLI 75
           ERR  +    +  +T+ MA+E    K IRDY  P     Q  I+  PI  NNFE+KP L+
Sbjct: 33  ERRKEQRRIEQEEETSTMAEEQNPRKTIRDYSMPDPNGYQGSIVRPPIQANNFEIKPALL 92

Query: 76  QMARELAFRGRTNENPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETI 135
           Q+ ++  F G  +E+P+ HL +FL IC T+K NGVS+DAI+LRLFPFSL+D+AK+WL+++
Sbjct: 93  QVIQQNQFEGAVSEDPNSHLENFLAICDTLKYNGVSDDAIRLRLFPFSLRDKAKNWLQSL 152

Query: 136 PPDSITTWEILAQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQH 195
           P  SI+TWE +A  F+ KYFPP+KS ++R EI +F Q ++E LYEAWERYK+L+R+CP H
Sbjct: 153 PQGSISTWEDMATKFVTKYFPPSKSAKMRNEITSFVQQDNESLYEAWERYKELMRKCPHH 212

Query: 196 GFPDWLQIQLFYNGLASLTKSILDATAGGSIFSKNAQEA 233
              +WLQ++ FYNGL+   K++LDA +GGS   K  +EA
Sbjct: 213 ALLEWLQVETFYNGLSPTFKAMLDAASGGSFILKTPEEA 251

[Close]
BLAST of ClCG04G002730 vs. NCBI nr
Match: gi|731376538|ref|XP_010667599.1| (PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 118/254 (46.46%), Postives = 158/254 (62.20%), Query Frame = 1 

Query: 1   MPGDNTNLLPLDPEIE---RRCRRNLRVEL------------------NQTTEMA-KEIP 60
           MPG N  L+ +DPEIE   R  R+  R+E                   N+  EM      
Sbjct: 1   MPGTNRALVSVDPEIEKTARAIRKQKRLEQIQKLPDFDLEYIFSEESDNKPLEMGDNNNE 60

Query: 61  KAIRDYFQPTLRASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNENPHKHLRSFLE 120
           K +RDY  P    +   I+   I+ NNFEL+P LIQ+ ++  F G  NE+P++H+ +FLE
Sbjct: 61  KPLRDYAMPNASGAPSSIVRPTISANNFELRPALIQIIQQDQFSGLDNEDPNEHITTFLE 120

Query: 121 ICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKS 180
            C TVK+NGV++D I+L LFPFSL+D+AK WL++ PP+S TTW  L+QAFL+KYFPP K+
Sbjct: 121 KCDTVKLNGVTDDVIRLGLFPFSLKDKAKMWLKSNPPNSFTTWATLSQAFLSKYFPPGKT 180

Query: 181 QRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHGFPDWLQIQLFYNGLASLTKSILDA 233
            + R  I +F Q + E LYEAWER+KDL R+CP HG PDWL +Q FYNGL    +  +DA
Sbjct: 181 AKFRNNITSFAQYDGESLYEAWERFKDLQRKCPHHGVPDWLLVQTFYNGLNESVRITIDA 240

The following BLAST results are available for this feature:
BLAST of ClCG04G002730 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC1.6e-5349.02Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
A0A151T4H0_CAJCA4.8e-4242.31Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_016461 PE=4 SV=1[more]
A0A151UDN3_CAJCA3.1e-4140.23Uncharacterized protein OS=Cajanus cajan GN=KK1_048874 PE=4 SV=1[more]
A0A151QRD6_CAJCA6.9e-4149.70Uncharacterized protein OS=Cajanus cajan GN=KK1_046325 PE=4 SV=1[more]
Q2AA09_ASPOF1.2e-4061.72Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1[more]
BLAST of ClCG04G002730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|672195269|ref|XP_008776509.1|4.7e-5954.31PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix da... [more]
gi|950999367|ref|XP_014506495.1|2.4e-5850.69PREDICTED: uncharacterized protein LOC106766267 [Vigna radiata var. radiata][more]
gi|985458955|ref|XP_015387963.1|6.8e-5854.04PREDICTED: uncharacterized protein LOC107177920 [Citrus sinensis][more]
gi|951038589|ref|XP_014517179.1|6.8e-5850.23PREDICTED: uncharacterized protein LOC106774649 [Vigna radiata var. radiata][more]
gi|731376538|ref|XP_010667599.1|1.5e-5746.46PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G002730.1ClCG04G002730.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 116..209
score: 7.5
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 68..230
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G002730Cucumber (Gy14) v1cgywcgB304
ClCG04G002730Cucurbita maxima (Rimu)cmawcgB594
ClCG04G002730Cucurbita maxima (Rimu)cmawcgB764
ClCG04G002730Cucurbita moschata (Rifu)cmowcgB586
ClCG04G002730Cucurbita moschata (Rifu)cmowcgB765
ClCG04G002730Wild cucumber (PI 183967)cpiwcgB322
ClCG04G002730Cucumber (Chinese Long) v2cuwcgB306
ClCG04G002730Melon (DHL92) v3.5.1mewcgB535
ClCG04G002730Watermelon (97103) v1wcgwmB256
ClCG04G002730Cucurbita pepo (Zucchini)cpewcgB080
ClCG04G002730Cucurbita pepo (Zucchini)cpewcgB440
ClCG04G002730Bottle gourd (USVL1VR-Ls)lsiwcgB145
ClCG04G002730Cucumber (Gy14) v2cgybwcgB283
ClCG04G002730Melon (DHL92) v3.6.1medwcgB531
ClCG04G002730Silver-seed gourdcarwcgB0461
ClCG04G002730Silver-seed gourdcarwcgB0502
ClCG04G002730Cucumber (Chinese Long) v3cucwcgB319
ClCG04G002730Watermelon (97103) v2wcgwmbB200