ClCG04G001440 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG MCEEVSKITTSFFNNLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK
BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42 Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 1
BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 6.8e-36 Identity = 78/160 (48.75%), Postives = 115/160 (71.88%), Query Frame = 1
BLAST of ClCG04G001440 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.4e-35 Identity = 82/201 (40.80%), Postives = 128/201 (63.68%), Query Frame = 1
BLAST of ClCG04G001440 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 8.6e-23 Identity = 78/231 (33.77%), Postives = 127/231 (54.98%), Query Frame = 1
HSP 2 Score: 155.6 bits (392), Expect = 7.5e-35 Identity = 75/160 (46.88%), Postives = 111/160 (69.38%), Query Frame = 1
BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 7.5e-35 Identity = 75/160 (46.88%), Postives = 111/160 (69.38%), Query Frame = 1
BLAST of ClCG04G001440 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 117.9 bits (294), Expect = 8.8e-27 Identity = 75/234 (32.05%), Postives = 126/234 (53.85%), Query Frame = 1
BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus]) HSP 1 Score: 179.9 bits (455), Expect = 5.3e-42 Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 1
BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]) HSP 1 Score: 179.5 bits (454), Expect = 7.0e-42 Identity = 97/215 (45.12%), Postives = 133/215 (61.86%), Query Frame = 1
BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]) HSP 1 Score: 132.5 bits (332), Expect = 9.8e-28 Identity = 92/228 (40.35%), Postives = 127/228 (55.70%), Query Frame = 1
HSP 2 Score: 176.0 bits (445), Expect = 7.7e-41 Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 1
BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]) HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27 Identity = 91/228 (39.91%), Postives = 126/228 (55.26%), Query Frame = 1
HSP 2 Score: 159.1 bits (401), Expect = 9.7e-36 Identity = 91/207 (43.96%), Postives = 132/207 (63.77%), Query Frame = 1
BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|694448039|ref|XP_009350012.1| (PREDICTED: transcription elongation factor B polypeptide 3-like [Pyrus x bretschneideri]) HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24 Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 1
HSP 2 Score: 159.1 bits (401), Expect = 9.7e-36 Identity = 78/160 (48.75%), Postives = 115/160 (71.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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