ClCG04G001440 (gene) Watermelon (Charleston Gray)

NameClCG04G001440
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTranscription elongation factor B polypeptide 3
LocationCG_Chr04 : 4896749 .. 4897475 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MCEEVSKITTSFFNNLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK
BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD+D   L  IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K+D D V+     K E+FKW  +Y AKM+ELE +AKKIE R IQ+ +KEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQS 191
           SRQI+FCG   S ++ K     +   F  NT ++  LKK+KRE  + +V  T +NK+  S
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS-TSSNKEWNS 185

BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.8e-36
Identity = 78/160 (48.75%), Postives = 115/160 (71.88%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L I  AID++++LGDVG++D +LL RILPHCT+DQL+H+E S+KGRDL+PVTDKLWKNF
Sbjct: 24  DLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWKNF 83

Query: 75  YE---KKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE    +  ++ VIERMK KK SF+W+Q+YEAK++++++   K   R  Q  +KE A+K+
Sbjct: 84  YELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQ 143

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSK 172
           SRQ+  C    P +K+  F G    +  +  ++ I+KK+K
Sbjct: 144 SRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAK 183

BLAST of ClCG04G001440 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.4e-35
Identity = 82/201 (40.80%), Postives = 128/201 (63.68%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L ++ A++++K+LGDVG++D +LL+RILPHCT+DQLMHIE S+ GRDL+ VTDKLWK F
Sbjct: 13  DLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWKTF 72

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YEK   +  +D VI+RM+ KK SF+W Q+YEAK++++ +   K+ AR  Q  +KE  +K+
Sbjct: 73  YEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYKKEDDRKQ 132

Query: 135 SRQIIFCGGSSPINKKRRF-EGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQS 194
           SRQ+  C    P + KR F  G    +  +  ++ ++KK+K +         + +++ Q+
Sbjct: 133 SRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMD--------FLKSREVQN 192

Query: 195 FGGTTK---PRQDTKSSKTKP 209
                K    R  + SS  KP
Sbjct: 193 IAAMKKNALQRNSSSSSMMKP 205

BLAST of ClCG04G001440 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.6e-23
Identity = 78/231 (33.77%), Postives = 127/231 (54.98%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L ++ A++++K+LGDVG++D +LL+RILPHCT+DQLMHIE S+ GRDL+ VTDKLWK F
Sbjct: 13  DLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWKTF 72

Query: 75  YEKK---NDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQ---NRRKEKA 134
           YEK+     +D VI+RM+ K                      K+  R++Q    + K+ A
Sbjct: 73  YEKQFGERSTDLVIQRMRQK----------------------KVSFRWLQLYEAKLKDIA 132

Query: 135 QKESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQIC-EVPFTINNKK 194
           + E++            + R+   K ++           +K  R+ ++C +VP + N   
Sbjct: 133 EAENKLAA---------RIRQLYKKEDD-----------RKQSRQVRLCSKVPPSSN--- 192

Query: 195 KQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           K+SF G + P  +  + K   S + KKAK + L   E +N+ A ++N +Q+
Sbjct: 193 KRSFCGGSGPGYNLSNGK---SNLMKKAKMDFLKSREVQNIAAMKKNALQR 195


HSP 2 Score: 155.6 bits (392), Expect = 7.5e-35
Identity = 75/160 (46.88%), Postives = 111/160 (69.38%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +   ID++++LGDVG++D +LL RILPHCT+DQL+H+E S+KGRDL+ VTDKLWKNF
Sbjct: 24  DLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWKNF 83

Query: 75  YE---KKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE    +     VIERMK KK SF+W+Q+YEAK++++++   K   R  Q  +KE A+K+
Sbjct: 84  YELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQ 143

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSK 172
           SRQ+  C    P +K+  F G    +  +  ++ I+KK+K
Sbjct: 144 SRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAK 183

BLAST of ClCG04G001440 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.5e-35
Identity = 75/160 (46.88%), Postives = 111/160 (69.38%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +   ID++++LGDVG++D +LL RILPHCT+DQL+H+E S+KGRDL+ VTDKLWKNF
Sbjct: 24  DLCVRTVIDNVRYLGDVGETDSHLLERILPHCTVDQLLHVETSTKGRDLSSVTDKLWKNF 83

Query: 75  YE---KKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE    +     VIERMK KK SF+W+Q+YEAK++++++   K   R  Q  +KE A+K+
Sbjct: 84  YELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQ 143

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSK 172
           SRQ+  C    P +K+  F G    +  +  ++ I+KK+K
Sbjct: 144 SRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAK 183

BLAST of ClCG04G001440 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-27
Identity = 75/234 (32.05%), Postives = 126/234 (53.85%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L + +AID++K++G VG  DF LL +IL HCT++QL HIE+++   DL+P+TDK WK F
Sbjct: 15  DLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGF 74

Query: 75  YEK---KNDSDFVIERMK-HKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQK 134
           Y+K   + D   +IE ++ +K   FKW+ +YE K+  +++K K++  R  +  + E  +K
Sbjct: 75  YKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERK 134

Query: 135 ESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETK--ILKKSK----REEQICEVPFTIN 194
           +SRQ   C  + P   KR F G  +  G N    K  I+KK+K    + +++  +     
Sbjct: 135 QSRQTKVCSKAPP--SKRPFWGN-SASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 194

Query: 195 NKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           N  ++SF  +T  +    ++    S+      R         NL   ++N +QK
Sbjct: 195 NTIQKSFSISTPKKTGLSANSPSTSRSIPYGGR---------NLTETKKNTIQK 236

BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 5.3e-42
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD+D   L  IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K+D D V+     K E+FKW  +Y AKM+ELE +AKKIE R IQ+ +KEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQS 191
           SRQI+FCG   S ++ K     +   F  NT ++  LKK+KRE  + +V  T +NK+  S
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS-TSSNKEWNS 185

BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 7.0e-42
Identity = 97/215 (45.12%), Postives = 133/215 (61.86%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+L+FLGDVG++D +LL+RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+ K+ +F+W Q+YEAKME++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE--------------EQIC 194
           SRQI  C    P + KR F G    +     + KILKK+K E                  
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAV 191

Query: 195 EVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIW 213
           +    I++ KK  F G  +    +K++ T  +K W
Sbjct: 192 QKSSDISSTKKPMFSG-RESASTSKNTSTHMAKRW 225

BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 9.8e-28
Identity = 92/228 (40.35%), Postives = 127/228 (55.70%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+L+FLGDVG++D +LL+RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+                       K++  R+IQ    +    E
Sbjct: 72  YERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMEDIE 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQIC-EVPFTINNKKKQS 194
             +      S   ++ ++   K N            +K  R+ QIC +VP + N   K+S
Sbjct: 132 KNE------SKAADRIKQSYLKENA-----------RKQSRQIQICSKVPPSSN---KRS 191

Query: 195 FGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           FGG+         + TK +KI KKAK E L   E KN+ A+RRN +QK
Sbjct: 192 FGGSG---YGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193


HSP 2 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+++FLGDVG++D +LL RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+ K+ +F+W Q+YEAKM+++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE 174
           SRQI  C    P + KR F G    +     + KILKK+K E
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 91/228 (39.91%), Postives = 126/228 (55.26%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+++FLGDVG++D +LL RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+                       K++  R+IQ    +    E
Sbjct: 72  YERQFGKESTTTVIERMRQ----------------------KRVAFRWIQLYEAKMQDIE 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQIC-EVPFTINNKKKQS 194
             +      S   ++ ++   K N            +K  R+ QIC +VP + N   K+S
Sbjct: 132 KNE------SKAADRIKQSYLKENA-----------RKQSRQIQICSKVPPSSN---KRS 191

Query: 195 FGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           FGG+         + TK +KI KKAK E L   E KN+ A+RRN +QK
Sbjct: 192 FGGSG---YGYNVANTK-NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193


HSP 2 Score: 159.1 bits (401), Expect = 9.7e-36
Identity = 91/207 (43.96%), Postives = 132/207 (63.77%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L IN AID+L+ LGDVG++D +LL RILPHCT+DQLMHIE S+KGRDLTP+TDKLWK F
Sbjct: 19  DLCINTAIDNLRRLGDVGETDSHLLKRILPHCTVDQLMHIEKSTKGRDLTPITDKLWKKF 78

Query: 75  YEKKNDS---DFVIERMKHKKESFKWKQVYEAKMEELEK----KAKKIEARYIQNRRKEK 134
           YEK+  +   + VIERMK KK +F+W Q+YEAK++E++      A K+++RY    ++  
Sbjct: 79  YEKEFGTKRVNEVIERMKQKKVAFRWIQLYEAKLKEVDMAENLMADKLKSRY----QEAN 138

Query: 135 AQKESRQIIFCGGSSPINKKRRFEGKPNEFGCN-TNETKILKKSK----REEQICEVPFT 194
           A+K+SRQ+  C    P + KR +   P   GCN T ++ ++KK+K    +  ++  +   
Sbjct: 139 ARKQSRQVQICTKVPPSSNKRSWGNGP---GCNVTGKSNLMKKAKLDFLKSNEVKNLAAM 198

Query: 195 INNKKKQSFGGTTKPRQDTKSSKTKPS 210
             N  ++S+      R D  S K   S
Sbjct: 199 KRNALQKSYSVPPVKRPDAFSGKASAS 218

BLAST of ClCG04G001440 vs. NCBI nr
Match: gi|694448039|ref|XP_009350012.1| (PREDICTED: transcription elongation factor B polypeptide 3-like [Pyrus x bretschneideri])

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L IN AID+L+ LGDVG++D +LL RILPHCT+DQLMHIE S+KGRDLTP+TDKLWK F
Sbjct: 19  DLCINTAIDNLRRLGDVGETDSHLLKRILPHCTVDQLMHIEKSTKGRDLTPITDKLWKKF 78

Query: 75  YEKKNDS---DFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YEK+  +   + VIERMK                       KK+  R+IQ    +  + +
Sbjct: 79  YEKEFGTKRVNEVIERMK----------------------QKKVAFRWIQLYEAKLKEVD 138

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQIC-EVPFTINNKKKQS 194
             + +          K R++                +K  R+ QIC +VP + N   K+S
Sbjct: 139 MAENLMAD-----KLKSRYQEAN------------ARKQSRQVQICTKVPPSSN---KRS 198

Query: 195 FGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           +G           + T  S + KKAK + L   E KNL A +RN +QK
Sbjct: 199 WGN------GPGCNVTGKSNLMKKAKLDFLKSNEVKNLAAMKRNALQK 198


HSP 2 Score: 159.1 bits (401), Expect = 9.7e-36
Identity = 78/160 (48.75%), Postives = 115/160 (71.88%), Query Frame = 1

Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L I  AID++++LGDVG++D +LL RILPHCT+DQL+H+E S+KGRDL+PVTDKLWKNF
Sbjct: 24  DLCIRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWKNF 83

Query: 75  YE---KKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE    +  ++ VIERMK KK SF+W+Q+YEAK++++++   K   R  Q  +KE A+K+
Sbjct: 84  YELQFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQ 143

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSK 172
           SRQ+  C    P +K+  F G    +  +  ++ I+KK+K
Sbjct: 144 SRQVQLCTKVPPSSKRSFFAGSGPGYNLSYVKSNIMKKAK 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KJR8_CUCSA3.7e-4253.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1[more]
A0A061DJY1_THECC6.8e-3648.75Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=... [more]
A9P8K1_POPTR4.4e-3540.80Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1[more]
A9P8K1_POPTR8.6e-2333.77Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1[more]
A0A0D2NJM7_GOSRA7.5e-3546.88Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G42780.18.8e-2732.05 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|700193830|gb|KGN49034.1|5.3e-4253.89hypothetical protein Csa_6G511010 [Cucumis sativus][more]
gi|449450878|ref|XP_004143189.1|7.0e-4245.12PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|449450878|ref|XP_004143189.1|9.8e-2840.35PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|659112953|ref|XP_008456387.1|2.2e-2739.91PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo][more]
gi|694448039|ref|XP_009350012.1|2.9e-2438.16PREDICTED: transcription elongation factor B polypeptide 3-like [Pyrus x bretsch... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G001440.1ClCG04G001440.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 29..135
score: 7.0
NoneNo IPR availableunknownCoilCoilcoord: 98..125
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 15..211
score: 5.1
NoneNo IPR availablePANTHERPTHR15141:SF53PROTEIN T23E1.3, ISOFORM Acoord: 15..211
score: 5.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG04G001440Cla97C04G069440Watermelon (97103) v2wcgwmbB200
The following gene(s) are paralogous to this gene:

None