ClCG04G000010 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G000010
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=364
Location	CG_Chr04 : 19767 .. 20408 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGCTCAGACAGATCAGATAAAGAGTACAAAATAGAGTCGGATGTGGAAAGTAGTGAAGAATATTCAGAATATTGTAGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAACATGTGAAGCCAAAATTAATGAACAGAGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACTCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGAAGAGCTGGAGATCGATATCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA

mRNA sequence

ATGTCGGGCTCAGACAGATCAGATAAAGAGTACAAAATAGAGTCGGATGTGGAAAGTAGTGAAGAATATTCAGAATATTGTAGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAACATGTGAAGCCAAAATTAATGAACAGAGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACTCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGAAGAGCTGGAGATCGATATCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA

Coding sequence (CDS)

ATGTCGGGCTCAGACAGATCAGATAAAGAGTACAAAATAGAGTCGGATGTGGAAAGTAGTGAAGAATATTCAGAATATTGTAGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAACATGTGAAGCCAAAATTAATGAACAGAGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACTCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGAAGAGCTGGAGATCGATATCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA

Protein sequence

MSGSDRSDKEYKIESDVESSEEYSEYCRSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCKGLYSKAFYEHVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGNSNNHELKLLGPHRLQVFVLSNRIWGDYDEGMKHLEGFREFLEELEIDINCLMPSCLEYLKKEWEVQMLMYIQLLSIKSNFDAKLRELILYVKSDSPT

Homology

[Close]

BLAST of ClCG04G000010 vs. TrEMBL
Match: W9SD90_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018292 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1


Query: 4   SDRSDKEYKIESDVESSEEYSEYCRSKRRRKAQRRRKKRSSSGGVLE------------W 63
           S R +K      D ES     +  R K+R+         +S GG  E            W
Sbjct: 115 SVRPNKRATESEDPESETSEKDSKRKKKRKVTSASASVTASKGGGDEEDSKKSLGFARVW 174

Query: 64  EEDDEITVLKQLYEFSAGSCKGLYSK--AFYEHVKPKLMNREVTMSEMSSKIGGFKNQYL 123
            EDDEI VLK + ++ A      Y+   AF++ +K K +N +V+ S++  KI   K +YL
Sbjct: 175 SEDDEIAVLKGMTDYKAKKGADPYADMGAFHDFIK-KSLNADVSKSQLVDKIRRLKKKYL 234

Query: 124 EWRRKGNSNNHELKLLGPHRLQVFVLSNRIWG 142
               KG  N+ +     PH L  F LS +IWG
Sbjct: 235 NNAAKGE-NDEDPVFSKPHELLSFKLSKKIWG 264

[Close]

BLAST of ClCG04G000010 vs. TrEMBL
Match: W9SAQ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018291 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 45/145 (31.03%), Postives = 67/145 (46.21%), Query Frame = 1


Query: 14  ESDVESSEEYSEYCRSKRRRKAQ---------------RRRKKRSSSGGVLEWEEDDEIT 73
           ES+    E   +  +SK++RK                      + SSG    W EDDEI 
Sbjct: 124 ESEDPERETSEKDSKSKKKRKVTSAAASASVTASNGGGDEEDSKKSSGFARVWSEDDEIA 183

Query: 74  VLKQLYEFSAGSCKGLYSK--AFYEHVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGN 133
           VLK + ++ A      Y+   AF++ +K K +N +V+ S++  KI   K +YL    KG 
Sbjct: 184 VLKGMTDYKAKKGADPYADMGAFHDFIK-KSLNADVSKSQLVDKIRRLKKKYLNNAAKG- 243

Query: 134 SNNHELKLLGPHRLQVFVLSNRIWG 142
            N+ +     PH L  F LS +IWG
Sbjct: 244 ENDEDPVFSKPHELLSFKLSKKIWG 266

[Close]

BLAST of ClCG04G000010 vs. NCBI nr
Match: gi|703149257|ref|XP_010109557.1| (hypothetical protein L484_018292 [Morus notabilis])

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1


Query: 4   SDRSDKEYKIESDVESSEEYSEYCRSKRRRKAQRRRKKRSSSGGVLE------------W 63
           S R +K      D ES     +  R K+R+         +S GG  E            W
Sbjct: 115 SVRPNKRATESEDPESETSEKDSKRKKKRKVTSASASVTASKGGGDEEDSKKSLGFARVW 174

Query: 64  EEDDEITVLKQLYEFSAGSCKGLYSK--AFYEHVKPKLMNREVTMSEMSSKIGGFKNQYL 123
            EDDEI VLK + ++ A      Y+   AF++ +K K +N +V+ S++  KI   K +YL
Sbjct: 175 SEDDEIAVLKGMTDYKAKKGADPYADMGAFHDFIK-KSLNADVSKSQLVDKIRRLKKKYL 234

Query: 124 EWRRKGNSNNHELKLLGPHRLQVFVLSNRIWG 142
               KG  N+ +     PH L  F LS +IWG
Sbjct: 235 NNAAKGE-NDEDPVFSKPHELLSFKLSKKIWG 264

[Close]

BLAST of ClCG04G000010 vs. NCBI nr
Match: gi|703149253|ref|XP_010109556.1| (hypothetical protein L484_018291 [Morus notabilis])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 45/145 (31.03%), Postives = 67/145 (46.21%), Query Frame = 1


Query: 14  ESDVESSEEYSEYCRSKRRRKAQ---------------RRRKKRSSSGGVLEWEEDDEIT 73
           ES+    E   +  +SK++RK                      + SSG    W EDDEI 
Sbjct: 124 ESEDPERETSEKDSKSKKKRKVTSAAASASVTASNGGGDEEDSKKSSGFARVWSEDDEIA 183

Query: 74  VLKQLYEFSAGSCKGLYSK--AFYEHVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGN 133
           VLK + ++ A      Y+   AF++ +K K +N +V+ S++  KI   K +YL    KG 
Sbjct: 184 VLKGMTDYKAKKGADPYADMGAFHDFIK-KSLNADVSKSQLVDKIRRLKKKYLNNAAKG- 243

Query: 134 SNNHELKLLGPHRLQVFVLSNRIWG 142
            N+ +     PH L  F LS +IWG
Sbjct: 244 ENDEDPVFSKPHELLSFKLSKKIWG 266

The following BLAST results are available for this feature:

BLAST of ClCG04G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SD90_9ROSA	4.5e-07	31.58	Uncharacterized protein OS=Morus notabilis GN=L484_018292 PE=4 SV=1	[more]
W9SAQ1_9ROSA	2.3e-06	31.03	Uncharacterized protein OS=Morus notabilis GN=L484_018291 PE=4 SV=1	[more]

BLAST of ClCG04G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703149257\|ref\|XP_010109557.1\|	6.5e-07	31.58	hypothetical protein L484_018292 [Morus notabilis]	[more]
gi\|703149253\|ref\|XP_010109556.1\|	3.2e-06	31.03	hypothetical protein L484_018291 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007592	GEBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000010.1	ClCG04G000010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007592	Protein of unknown function DUF573	PFAM	PF04504	DUF573	coord: 51..141 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G000010	Cla002782	Watermelon (97103) v1	wcgwmB262

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None