ClCG03G012350 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G012350
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein
LocationCG_Chr03 : 25095918 .. 25098045 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCAATTTTCTTGCATATTCTAACACACGATGTTAAGAATAGGATAGTTAGAAGTCATTTTGCAAGGTCTAGTGAGACAGTGTCAAGACACTTCAACGTTGTTCTCCTTGCAGTTCTTAAGACTCCACGAAGTCCTTTTGAAGCACCCATTCATGTACGACGAGAAGTGGGGATGGTTTCAGATATATAAATAAGCTCACCCACTACTTTACATTGGAGATGTGCTTGTCTAGAATGACAAATAAAAAGCTTTTTTCCCCTAACAAAATTGTCTAGGTGCGTTAGATGATATGCACATCAAGGTAAATGTAAGTGTGAGTGACTGCCCAAGGTATAGGAACAAAAAGGGTAATGTTGCCACAAATGTATTTGATGTGTGCTCGCAAAAAGGTGAGTTCATATTTGTCATGACTGGATGGGAAGGGTATAGGAATAGAAAGGGTAATGTTGCTACAAATGTATTTGGTGTGTGCTCACAAAATGGTGAATTCATATTTGACATGTCTGGATGGGAAGGGTTCGTATTCGATTTGAGGGTACTTAGAGCAATATCACGACCTACTGGTCTGAAAGTCCCAAGGGGTAAGGTGATGCATTCTTTTTTCTTGAGGTAGTGGTGTCAGACCATATGCCCACTTAATACAATAAACCTAATAATTCATAATGATCGCAACATGGGTAGGTTACTACTACTTCTGTGATGTTGGTTATCCAAATGCTGAAGGATTCCTTGCTCCATACTGAGGTCAACGCTACTATCTAACCGAGTGGCATGGAGGAAACCCACCAACATGTCCAAAAGAGTAATTCAACATGAGACATTCCTCTACTAGAAACATTATTGAGAGAGCATTTGGATCATTGAAGGGTCAGTGGGCTATTCTACGAGGCAGATCATTTTACCCCGTTTAGATAGAATGTAGGATAATAACAACATGTTTCCTCCTACGTAACTTGATACACAAAGAAATGGGTTCAAATCCAACGATTGAGGACGCACATCTTGGTGAAGGCGATTTAAATGAGATGAACACTAAGAATATAAACTTTGTGGAAACGACTTATCTAGACTGAATGGAGGGATAATCTTGCAAATAAAATGTTTGAGGACTGGAATACTGTATGACTAATATATGTAGTTCAATTTCTCATGTAATTTTGTTGTTTGTCACATGATCTGTAATTGAACTATCTTTTGTGTGTAATTAAAGTCAGAAATACATGGGGTTTCTTCTAATTTATAAGAACTAAGATATGTATATGTCAATTTATAAATATTAAATATATTAACTTTACTAAAATTCATGTGTTAACTCAGATGGCATCGATAAATTCAAAAGCCACTAAGCATAGGTGGACGGCCATTGAGGATGAGGTATTGGTTGAGTGTCTATTACAACTAGTGCAACCAGGTGGCTGGAGGGCCGATAATGGGACATTTAGACTAGGTACTTGGTACAAGTACAAAAAATTAATGAAAGAAAAAAATTCCTAGAAACAACATACAAGTAACTCTAAATATGGAGTCTAAGAGTGAAACTTTTGAAGAAGCAATACATTGTCATCGCAGAGATGATGGGGCCAACGTGTAGTGACACCCCAATGCTCGAGCGTCTACTGAACAAATCATTCCCTTACTTCCATGACTTGTAAATTGTGTTTAGTAGAGATAGAGCTACTGATGGTAAAGTTAAGACGCTCCTTAACATGGGCTCACAGACCACAAAGAATATGGAGGAAGATGACATGGCATTAATCTCGAAGATTTTGATACACCAAATCTGTATGGACTCGAGCCTACATCGGGGGAAGACATGCCATCCACTCCCACAAGCAAGGCACATGGTGCAGGATCGTCTAGACCAAGTAAGAAAAGGCAGTCATATTCAGAAGACCTCGTTGACATATTTTGAACAGGTATGCGAGATGCTTCCATGGAAGTTGGGAAGATTGTTGCATGGCCAAAAGAAAGGATGAAAGTGGAATTATCCCTACACAAACAATTATACGCTAAGTTACAGACTATTCCTGGAATGAACATGGACGACTATTTGATTGTAGTCGAGTCTCTGCTACCCAATCCCACGATGTTGCGCTCATTCCTTAACTACCTGGAAGCATAA

mRNA sequence

ATGGTTGCAATTTTCTTGCATATTCTAACACACGATGTTAAGAATAGGATAGTTAGAAGTCATTTTGCAAGGTCTAGTGAGACAGTGTCAAGACACTTCAACGTTGTTCTCCTTGCAGTTCTTAAGACTCCACGAAGTCCTTTTGAAGCACCCATTCATGTACGACGAGAAGTGGGGATGGTAAATGTAAGTGTGAGTGACTGCCCAAGGTATAGGAACAAAAAGGGTAATGTTGCCACAAATGTATTTGATGTGTGCTCGCAAAAAGGTGAGTTCATATTTGTCATGACTGGATGGGAAGGGTATAGGAATAGAAAGGGTAATGTTGCTACAAATGTATTTGGTGTGTGCTCACAAAATGGTGAATTCATATTTGACATGTCTGGATGGGAAGGGTTCGTATTCGATTTGAGGGTACTTAGAGCAATATCACGACCTACTGGTCTGAAAGTCCCAAGGGGTAAGGTTACTACTACTTCTGTGATGTTGGTTATCCAAATGCTGAAGGATTCCTTGCTCCATACTGAGACTGAATGGAGGGATAATCTTGCAAATAAAATGTTTGAGGACTGGAATACTATGGCATCGATAAATTCAAAAGCCACTAAGCATAGGTGGACGGCCATTGAGGATGAGGTATTGGTTGAGTGTCTATTACAACTAGTGCAACCAGGTGGCTGGAGGGCCGATAATGGGACATTTAGACTAGATTTTGATACACCAAATCTGTATGGACTCGAGCCTACATCGGGGGAAGACATGCCATCCACTCCCACAAGCAAGGCACATGGTGCAGGATCGTCTAGACCAAGTATGCGAGATGCTTCCATGGAAGTTGGGAAGATTGTTGCATGGCCAAAAGAAAGGATGAAAGTGGAATTATCCCTACACAAACAATTATACGCTAAGTTACAGACTATTCCTGGAATGAACATGGACGACTATTTGATTGTAGTCGAGTCTCTGCTACCCAATCCCACGATGTTGCGCTCATTCCTTAACTACCTGGAAGCATAA

Coding sequence (CDS)

ATGGTTGCAATTTTCTTGCATATTCTAACACACGATGTTAAGAATAGGATAGTTAGAAGTCATTTTGCAAGGTCTAGTGAGACAGTGTCAAGACACTTCAACGTTGTTCTCCTTGCAGTTCTTAAGACTCCACGAAGTCCTTTTGAAGCACCCATTCATGTACGACGAGAAGTGGGGATGGTAAATGTAAGTGTGAGTGACTGCCCAAGGTATAGGAACAAAAAGGGTAATGTTGCCACAAATGTATTTGATGTGTGCTCGCAAAAAGGTGAGTTCATATTTGTCATGACTGGATGGGAAGGGTATAGGAATAGAAAGGGTAATGTTGCTACAAATGTATTTGGTGTGTGCTCACAAAATGGTGAATTCATATTTGACATGTCTGGATGGGAAGGGTTCGTATTCGATTTGAGGGTACTTAGAGCAATATCACGACCTACTGGTCTGAAAGTCCCAAGGGGTAAGGTTACTACTACTTCTGTGATGTTGGTTATCCAAATGCTGAAGGATTCCTTGCTCCATACTGAGACTGAATGGAGGGATAATCTTGCAAATAAAATGTTTGAGGACTGGAATACTATGGCATCGATAAATTCAAAAGCCACTAAGCATAGGTGGACGGCCATTGAGGATGAGGTATTGGTTGAGTGTCTATTACAACTAGTGCAACCAGGTGGCTGGAGGGCCGATAATGGGACATTTAGACTAGATTTTGATACACCAAATCTGTATGGACTCGAGCCTACATCGGGGGAAGACATGCCATCCACTCCCACAAGCAAGGCACATGGTGCAGGATCGTCTAGACCAAGTATGCGAGATGCTTCCATGGAAGTTGGGAAGATTGTTGCATGGCCAAAAGAAAGGATGAAAGTGGAATTATCCCTACACAAACAATTATACGCTAAGTTACAGACTATTCCTGGAATGAACATGGACGACTATTTGATTGTAGTCGAGTCTCTGCTACCCAATCCCACGATGTTGCGCTCATTCCTTAACTACCTGGAAGCATAA

Protein sequence

MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGMVNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVFGVCSQNGEFIFDMSGWEGFVFDLRVLRAISRPTGLKVPRGKVTTTSVMLVIQMLKDSLLHTETEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNGTFRLDFDTPNLYGLEPTSGEDMPSTPTSKAHGAGSSRPSMRDASMEVGKIVAWPKERMKVELSLHKQLYAKLQTIPGMNMDDYLIVVESLLPNPTMLRSFLNYLEA
Homology
[Close]
BLAST of ClCG03G012350 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FLH+L HDVKNR+++  F RS ETVSRHFN+VLLAVL+      + P+ V      
Sbjct: 44  MVAMFLHVLAHDVKNRVIQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPV------ 103

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVC--SQKGEFIFVMT---GWEGYRNRKGNVATNVFG 120
                S+C   R K        F+ C  +  G +I V         +R RKG +ATNV G
Sbjct: 104 ----TSNCNDQRWK-------CFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLG 163

Query: 121 VCSQNGEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRG 155
           VC   G+F++ ++GWEG   D R+LR AIS+  GL+VP+G
Sbjct: 164 VCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 186

[Close]
BLAST of ClCG03G012350 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 4.5e-01
Identity = 21/59 (35.59%), Postives = 29/59 (49.15%), Query Frame = 1 

Query: 177 TEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNGTFR 236
           ++WRD+LA  MF DW      +                  C ++LV  GGW++DNGTFR
Sbjct: 318 SQWRDDLATSMFTDWQFRGGDS------------------CGMELVSMGGWKSDNGTFR 358


HSP 2 Score: 115.9 bits (289), Expect = 9.4e-23
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FLHIL HDVK+R+++  F RS ET+SRHFN+VLLAV++      + P  V  E   
Sbjct: 72  MVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNE--- 131

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFV---MTGWEGYRNRKGNVATNVFGVC 120
                  C   R +         D     G +I V    +    YR RKG VATNV GVC
Sbjct: 132 -------CTDQRWRWFENCLGALD-----GTYIKVNVPASDRARYRTRKGEVATNVLGVC 191

Query: 121 SQNGEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRG 155
              G+F++ ++GWEG   D R+LR A+SRP  LKVP+G
Sbjct: 192 DTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKG 214

[Close]
BLAST of ClCG03G012350 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.5e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 177 TEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNGTFR 236
           ++WRDNLA ++          +S+  KH WT  E+  LVECL++LV  GGWR+DNGTFR
Sbjct: 345 SQWRDNLAEEIMTS-------SSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFR 396


HSP 2 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FLHIL H VKNR+++  F RS ET+SRHFN VL AV++      + P  V      
Sbjct: 103 MVALFLHILAHHVKNRVIKFRFLRSGETISRHFNAVLNAVIRLQGVLLKKPEPVSE---- 162

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVFGVCSQN 120
            N +      ++N  G +      V  ++G+          YR RK  +ATNV GVCSQ+
Sbjct: 163 -NSTDERWKWFKNCLGALDGTYIKVNVREGD-------KPRYRTRKNEIATNVLGVCSQD 222

Query: 121 GEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRG 155
            +FI+ + GWEG   D RVLR A+SR  GL VP G
Sbjct: 223 MQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHG 245

[Close]
BLAST of ClCG03G012350 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 3.0e+03
Identity = 23/65 (35.38%), Postives = 30/65 (46.15%), Query Frame = 1 

Query: 203 KHRWTAIEDEVLVECLLQLVQPGGWRADNGTFRLDFDTPNLYGLEPTSGEDMPSTPTSKA 262
           K  WT  EDE LVECL++L   G    D    RL    P+   L    G+D       +A
Sbjct: 383 KRVWTPGEDEKLVECLVELCVSGKGHKDANGLRLK-PFPHFDDLSLVFGKD-------RA 439

Query: 263 HGAGS 268
           +G G+
Sbjct: 443 NGKGA 439


HSP 2 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 79/233 (33.91%), Postives = 105/233 (45.06%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FL++L H  KNR++++ F RS ET+SR+FN VL AVL           ++R     
Sbjct: 47  MVAVFLNVLAHHKKNRVIQNDFYRSGETISRYFNAVLGAVLCLQNELKLDGTYIR----- 106

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVFGVCSQN 120
           ++V  +D PR                               YR RK  +ATNV GVCSQ+
Sbjct: 107 LHVPEADKPR-------------------------------YRTRKNEIATNVLGVCSQD 166

Query: 121 GEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRGKVTTTSVMLVIQMLKDSLLHTETEW 180
            +FI+ + GWEGF  D R+LR AISR  G+ +      TT+                   
Sbjct: 167 MQFIYVLPGWEGFAADSRILRDAISRRHGMDLGMNSTPTTA------------------- 207

Query: 181 RDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNG 233
           R N  +K                 H WT IED  LVE L +L   G W+ DNG
Sbjct: 227 RRNRKDK-----------------HIWTPIEDAFLVEALNELCVGGCWKVDNG 207

[Close]
BLAST of ClCG03G012350 vs. TrEMBL
Match: A5AFK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032219 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.7e-20
Identity = 68/159 (42.77%), Postives = 91/159 (57.23%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FLHIL H VKNR+++  F RS ET+SRHFN VL AV++      + P  V      
Sbjct: 35  MVALFLHILAHHVKNRVIKFRFLRSGETISRHFNAVLNAVIRLQGVLLKKPEPVSEN--- 94

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEG---YRNRKGNVATNVFGVC 120
              S+ +  R++  K  +        +  G +I V     G   YR +K  +ATNV GVC
Sbjct: 95  ---SIDE--RWKWFKNCLG-------ALDGTYIRVNVRERGKPRYRTKKNEIATNVLGVC 154

Query: 121 SQNGEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRGK 156
           SQ+ +FI+ +SGW+G   D RVLR A+SR  GL VP GK
Sbjct: 155 SQDMQFIYVLSGWKGSTSDSRVLRDAVSRRNGLTVPHGK 178

[Close]
BLAST of ClCG03G012350 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 51/158 (32.28%), Postives = 77/158 (48.73%), Query Frame = 1 

Query: 2   VAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGMV 61
           +AIFL I+ H+++ R V+  F  S ET+SRHFN VL AV+   +  F+   +        
Sbjct: 78  LAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSN-------S 137

Query: 62  NVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWE---GYRNRKGNVATNVFGVCS 121
           +   +D P +++  G V              I VM G +    +RN  G +  NV    S
Sbjct: 138 DTLENDDPYFKDCVGVV----------DSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASS 197

Query: 122 QNGEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRGK 156
            +  F + ++GWEG   D +VL  A++R   L+VP+GK
Sbjct: 198 FDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGK 218

[Close]
BLAST of ClCG03G012350 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 90/236 (38.14%), Postives = 123/236 (52.12%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+F+HIL HDVKNR+++  F +S ET+  HF++VLLA+++      + P  V      
Sbjct: 30  MVAMFIHILAHDVKNRVIQREFMQSGETIFCHFHIVLLAIIRLHDEFLKKPQPV------ 89

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVFGVCSQN 120
                +DC   R +         D    K       +    YR RKG VATNVFGVC   
Sbjct: 90  ----ANDCTDQRWRWFENCLGALDGTYTKVNV--PESDRARYRTRKGEVATNVFGVCDTK 149

Query: 121 GEFIFDMSGWEGFVFDLRVLR-AISRPTGLKVPRGKVTTTSVMLVIQMLKDSLLHTETEW 180
           G+F++ ++GW+G   D R+L  AISRP GLKVP+              L D        +
Sbjct: 150 GDFVYVLAGWKGSTADSRILLDAISRPNGLKVPKN----------YYYLVDVGYPNAEGF 209

Query: 181 RDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNGTFR 236
                 + +     MAS +S+  KH WT  E+  LVECL++LV  GGWR+DNGTFR
Sbjct: 210 LAPYRGQCYHLQECMAS-SSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFR 242

[Close]
BLAST of ClCG03G012350 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 67/116 (57.76%), Postives = 83/116 (71.55%), Query Frame = 1 

Query: 237 DFDTPNLYGLEPTSGEDMPSTPTSKAHGAGSSRPS-----------------MRDASMEV 296
           DFD PN +GLEP SGEDM STPTS AH  GSS+PS                 MR+ S E+
Sbjct: 87  DFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYSEDLMDTFRASMRETSKEI 146

Query: 297 GKIVAWPKERMKVELSLHKQLYAKLQTIPGMNMDDYLIVVESLLPNPTMLRSFLNY 336
            KI AW +E+M++E S+HK+LYA+LQTIPGM++DD LIVVESLLP+P ML +FL+Y
Sbjct: 147 RKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDY 202

[Close]
BLAST of ClCG03G012350 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 9.0e-27
Identity = 90/250 (36.00%), Postives = 124/250 (49.60%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRREVGM 60
           MVA+FLHIL HDVKNR+++  F RS ET+SRHFN+  L  L           +++     
Sbjct: 160 MVAMFLHILEHDVKNRVIQREFMRSGETISRHFNMNCLGALDGT--------YIK----- 219

Query: 61  VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVF---GVC 120
           VNV  SD  RYR  KG VATNV  VC  KG+F++V+ GW      KG+ A +      + 
Sbjct: 220 VNVPASDRARYRTCKGEVATNVLGVCDTKGDFVYVLAGW------KGSAADSCILRDALS 279

Query: 121 SQNG-------EFIFDMS--GWEGFVFDLRVLRAISRPTGLKVPRGKVTTTSVMLVIQML 180
             NG        ++ D+     EGF+   R  R       L+  RG     S       +
Sbjct: 280 RPNGLKVPKDYYYLVDVGYPNAEGFLAPYRGQRY-----HLQEWRGPENVPSTSKEFFNM 339

Query: 181 KDSLLHTETEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWR 239
           K S      E    +    +       + +S+ +KH WT  E+  LVECL++LV  GGWR
Sbjct: 340 KHSSARNVIERAFGVLKGRWAILRGNMTSSSRLSKHTWTKEEEAGLVECLVELVNAGGWR 385

[Close]
BLAST of ClCG03G012350 vs. NCBI nr
Match: gi|659100589|ref|XP_008451169.1| (PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 7.6e-26
Identity = 91/259 (35.14%), Postives = 127/259 (49.03%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAPIHVRRE--- 60
           MVA+FLHI+ +DVKNR+++  F RS ET+SRHFN+VLL V++      + P  V  +   
Sbjct: 30  MVAMFLHIVAYDVKNRVIQQEFMRSDETISRHFNMVLLVVIRLHDELLKKPQPVNSDCTD 89

Query: 61  ---------VGM-------VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGW-- 120
                    +G+       VNV  SD  RYR  KG VATNV  VC  KG+F++V+ G+  
Sbjct: 90  QRWRWFKNYLGVLDGTYIKVNVPASDWARYRTCKGEVATNVLGVCDTKGDFVYVLVGYYY 149

Query: 121 ---EGYRNRKGNVATNVFGVCSQNGEFIFDMSGWEGFVFDLRVLRAISRPTGLKVPRGKV 180
               GY N  G +A          G+  + +  W GF          + P+  K     +
Sbjct: 150 LVDAGYPNVDGFLAP-------YRGQR-YHLQEWCGFE---------NAPSTSK-EFFNM 209

Query: 181 TTTSVMLVIQMLKDSLLHTETEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVE 236
              S   VI+   D L       R N+ +            +S+  KH WT  E+  L+E
Sbjct: 210 KHLSARNVIERALDVLKSRWAILRGNMTS------------SSRLPKHSWTKEEEAGLIE 258

[Close]
BLAST of ClCG03G012350 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 9.9e-26
Identity = 86/239 (35.98%), Postives = 117/239 (48.95%), Query Frame = 1 

Query: 1   MVAIFLHILTHDVKNRIVRSHFARSSETVSRHFNVVLLAVLKTPRSPFEAP----IHVRR 60
           MVA+FLHI+ HDVKNR+++  F RS ET+ RHFN+VLLAV++      + P    +    
Sbjct: 1   MVAMFLHIVAHDVKNRVIQREFMRSGETIFRHFNMVLLAVIRLHDELLKKPQPNCLGALD 60

Query: 61  EVGM-VNVSVSDCPRYRNKKGNVATNVFDVCSQKGEFIFVMTGWEGYRNRKGNVATNVFG 120
           E  + VNV  SD  RYR +KG VATNV   C  KG+F++V+ G+  Y    GN       
Sbjct: 61  ETYIKVNVPASDRARYRTRKGEVATNVLGACDTKGDFVYVLAGYY-YLVYAGN------- 120

Query: 121 VCSQNGEFIFDMSGWEGFVFDLRVLRAISRPTGLKVPRGKVTTTSVMLVIQMLKDSLLHT 180
                          +GF+   R  R       L+  RG     S       +K S  H 
Sbjct: 121 ------------PNADGFLAPYRGQR-----YHLQEWRGAENAPSTSKEFFNMKHSSTHN 180

Query: 181 ETEWRDNLANKMFEDWNTMASINSKATKHRWTAIEDEVLVECLLQLVQPGGWRADNGTF 235
             E    +    +       + +S+  KH WT  E+  LVECL++LV   GWR+DNGTF
Sbjct: 181 IIERAFGVLKGRWAILRENMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTF 214

The following BLAST results are available for this feature:
BLAST of ClCG03G012350 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.4e-2343.75Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME4.5e-0135.59Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME5.5e-0749.15Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI3.0e+0335.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
A5AFK8_VITVI5.7e-2042.77Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032219 PE=4 SV=1[more]
BLAST of ClCG03G012350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41980.11.3e-1032.28 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
BLAST of ClCG03G012350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118456|ref|XP_008459129.1|1.8e-3038.14PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo][more]
gi|659071532|ref|XP_008460440.1|1.1e-2757.76PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|9.0e-2736.00PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|659100589|ref|XP_008451169.1|7.6e-2635.14PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|9.9e-2635.98PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G012350.1ClCG03G012350.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 2..101
score: 6.5
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 2..101
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G012350Bottle gourd (USVL1VR-Ls)lsiwcgB364
ClCG03G012350Cucumber (Gy14) v2cgybwcgB043
ClCG03G012350Melon (DHL92) v3.6.1medwcgB237
ClCG03G012350Silver-seed gourdcarwcgB0864
ClCG03G012350Silver-seed gourdcarwcgB0944
ClCG03G012350Cucumber (Chinese Long) v3cucwcgB050
ClCG03G012350Watermelon (97103) v2wcgwmbB186
ClCG03G012350Wax gourdwcgwgoB362
ClCG03G012350Cucumber (Gy14) v1cgywcgB607
ClCG03G012350Cucurbita maxima (Rimu)cmawcgB054
ClCG03G012350Cucurbita maxima (Rimu)cmawcgB113
ClCG03G012350Cucurbita moschata (Rifu)cmowcgB045
ClCG03G012350Cucurbita moschata (Rifu)cmowcgB101
ClCG03G012350Wild cucumber (PI 183967)cpiwcgB049
ClCG03G012350Cucumber (Chinese Long) v2cuwcgB046
ClCG03G012350Melon (DHL92) v3.5.1mewcgB245
ClCG03G012350Watermelon (97103) v1wcgwmB226
ClCG03G012350Cucurbita pepo (Zucchini)cpewcgB327
ClCG03G012350Cucurbita pepo (Zucchini)cpewcgB599