ClCG03G011590 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G011590
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein, putative, unclassified
LocationCG_Chr03 : 22850032 .. 22851070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGTATAGTTAGTGCCACATCGAAACGATCGGAATTACGAGGGGAAAGGATTTTACAGCTTTTGTGGGAAATTGAAAAGAGAAAGGAGAGGGAAAGAGAGATGGAAAAGGACATATAAAACAAAATTAATATTAAAATAAGAAAAAGTTCACATCATTCACCTCATCTAATTTGTATGTTAATCAACTAACGGTCAAATAAATTTGGGGACCATTTAAACCAATTTTTTAAACCTCAAGGATTAAGAGTGTATCCAGACTAAATAGACATTTATCTTAGGATCAAAAGTGCATTTTGCCGATAAGTTTGATGGTTGAACTTTGAGAAGTTGTGTTTAACAAGAAATAGAAAAAGTGTCTAATAAGAACATGAACAACCAAAAGTTTCCAGATTTAAAGCATCAAACTATTTTACCACTTGTAACAACAAGCATTCACCTAACTCAATAAAGGAAACATTTTAACATTAATAAACTTCAAGAACTACTTCAAACTATTGAGCATGCCAATAAGACCAACTTGAAGTTTCAAAATCAAGCAACGCCAACTCTATTCTTCAAATTGAACATAAAATTTTGTAGTAAAAGGATTAGCAACAACGAAAACATTAGCCAGATTATCGTTTGGGCAGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

mRNA sequence

ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

Coding sequence (CDS)

ATGTACAGTTGTTTTATAGCCCTAACTTTTGTTCTCTTGACGTTGGTGACGTCGTCATGTGTCCAAAAGGCCTCTGATGTGCTGGTTAGGGGTTTTGTGGATCCAAATTTGGGTATTGATTGGTGCCCCATTTCAAATAGGGAGGGGGAGGATTTGGTAGCCCTGTTTTCTTGGGAAGAAATTAAGAAGGCGGCTTTTGGGAGTGGAAAGAAGCAAATTGCAGGGATGGGATGGGATGGTATCTCGATGGGGTTTTATCAAGATAATTGGGAGCTTCTCAAGAATGAGTTGGAAGGTGTATTTAAAGAATTCCTTGAGAGGGGCATATTGAATATATCTATTTCTAAAACGTTTGTGTGCCTCATTCCGAAGAAGAACATGCAAATAGGGTTAAGGACTTTACACCTATAA

Protein sequence

MYSCFIALTFVLLTLVTSSCVQKASDVLVRGFVDPNLGIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNELEGVFKEFLERGILNISISKTFVCLIPKKNMQIGLRTLHL
Homology
[Close]
BLAST of ClCG03G011590 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 153 GLNWCPISQVEADWLERPFDLEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 212

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 213 MKVMQDFFQSGIVNGVTNETFICLIPKK 238

[Close]
BLAST of ClCG03G011590 vs. TrEMBL
Match: M5WPQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 686 GLNWCPISQVEADWLERPFDLEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 745

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 746 MKVMQDFFQSGIVNGVTNETFICLIPKK 771

[Close]
BLAST of ClCG03G011590 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 396 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSMSFFQSCWEVVKGDL 455

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 456 MKVMQDFFQSGIVNGVTNETFICLIPKK 481

[Close]
BLAST of ClCG03G011590 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 404 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSMSFFQSCWEVVKGDL 463

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 464 MKVMQDFFQSGIVNGVTNETFICLIPKK 489

[Close]
BLAST of ClCG03G011590 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG S+ F+Q  WE++K +L
Sbjct: 160 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSLSFFQSCWEVVKGDL 219

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 220 MKVMQDFFQSGIVNGVTNETFICLIPKK 245

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: gi|595883970|ref|XP_007212886.1| (hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica])

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 153 GLNWCPISQVEADWLERPFDLEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 212

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 213 MKVMQDFFQSGIVNGVTNETFICLIPKK 238

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: gi|595905097|ref|XP_007214027.1| (hypothetical protein PRUPE_ppa016677mg [Prunus persica])

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 686 GLNWCPISQVEADWLERPFDLEEVQKAVFDCGKDKSPGP--DGFSMSFFQSCWEVVKGDL 745

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 746 MKVMQDFFQSGIVNGVTNETFICLIPKK 771

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: gi|596230697|ref|XP_007224290.1| (hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica])

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 396 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSMSFFQSCWEVVKGDL 455

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 456 MKVMQDFFQSGIVNGVTNETFICLIPKK 481

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: gi|595809689|ref|XP_007202950.1| (hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica])

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG SM F+Q  WE++K +L
Sbjct: 404 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSMSFFQSCWEVVKGDL 463

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 464 MKVMQDFFQSGIVNGVTNETFICLIPKK 489

[Close]
BLAST of ClCG03G011590 vs. NCBI nr
Match: gi|595831294|ref|XP_007206246.1| (hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 38  GIDWCPISNREGEDLVALFSWEEIKKAAFGSGKKQIAGMGWDGISMGFYQDNWELLKNEL 97
           G++WCPIS  E + L   F  EE++KA F  GK +  G   DG S+ F+Q  WE++K +L
Sbjct: 160 GLNWCPISQVEADWLERPFDLEEVQKAVFECGKDKSPGP--DGFSLSFFQSCWEVVKGDL 219

Query: 98  EGVFKEFLERGILNISISKTFVCLIPKK 126
             V ++F + GI+N   ++TF+CLIPKK
Sbjct: 220 MKVMQDFFQSGIVNGVTNETFICLIPKK 245

The following BLAST results are available for this feature:
BLAST of ClCG03G011590 vs. TrEMBL
Match NameE-valueIdentityDescription
M5X4S0_PRUPE3.5e-1345.45Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S... [more]
M5WPQ5_PRUPE3.5e-1345.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1[more]
M5XHS0_PRUPE4.6e-1345.45Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S... [more]
M5VS59_PRUPE4.6e-1345.45Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S... [more]
M5WKV4_PRUPE1.0e-1244.32Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S... [more]
BLAST of ClCG03G011590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595883970|ref|XP_007212886.1|5.1e-1345.45hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica][more]
gi|595905097|ref|XP_007214027.1|5.1e-1345.45hypothetical protein PRUPE_ppa016677mg [Prunus persica][more]
gi|596230697|ref|XP_007224290.1|6.6e-1345.45hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica][more]
gi|595809689|ref|XP_007202950.1|6.6e-1345.45hypothetical protein PRUPE_ppa016504mg, partial [Prunus persica][more]
gi|595831294|ref|XP_007206246.1|1.5e-1244.32hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011590.1ClCG03G011590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G011590Melon (DHL92) v3.6.1medwcgB230
ClCG03G011590Watermelon (97103) v2wcgwmbB186
ClCG03G011590Wax gourdwcgwgoB371
ClCG03G011590Cucumber (Gy14) v1cgywcgB607
ClCG03G011590Watermelon (97103) v1wcgwmB228
ClCG03G011590Watermelon (97103) v1wcgwmB232