ClCG03G011460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G011460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr03 : 22199995 .. 22200345 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

mRNA sequence

ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

Coding sequence (CDS)

ATGACACCAGAAATAGCCACTCAAGTAATGGGATATGAGAAATCGAAGGACCTATGGGAAGCAATCCAAAAGTTGTTCGATGTTCAATCCAAAACTGAAGAGGATTTCCTCAGGCAAACATTCCAACAGACTAGAAAAGGTAATTTTCGTATGTCTGAATATCTACGATTGATGAAAATGCACTCTGATAATCTGGGTCAAGCAGAAAGTCATGTTCCCACTAGACCGCTTGTATCTCAAGTCCTTTTAGGGCTTGATGAAGATTACAATCCAGTAGTTGCTACCTTACAAGGAAAACCAGAAACAACTTGGCTAGAAATGCAATTGGAGCTATTAACCTATGAAAGATGA

Protein sequence

MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKMHSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER

Homology

[Close]

BLAST of ClCG03G011460 vs. TrEMBL
Match: A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-35
Identity = 70/116 (60.34%), Postives = 92/116 (79.31%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           +TPE+  Q++G+  +KD+WEA    F V+S+ EEDFLRQTFQ TRKGN  M +YLR+MK 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           ++DNLGQAES +P R L+SQVLLGLDE YNPV+  +QGKPE +WL+MQ +LL +E+
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

[Close]

BLAST of ClCG03G011460 vs. TrEMBL
Match: A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
          MTPE+A Q+MG+  +KDLWEAIQ LF VQ + EEDFLR TFQ T+KGN +M +YL  MK 
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATL 97
          + DNL QA SHVP   L+SQV+LGLDE YNPV A +
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of ClCG03G011460 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-21
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MT E+ATQ++  E S+ +WE  Q L    +++   FL+  F +TRKG  +M EYL  MK 
Sbjct: 1   MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
            +D+L  A S V T  LV+Q L GLD +YNP+V  L  K   TW+EMQ +LLTYE
Sbjct: 61  IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYE 115

[Close]

BLAST of ClCG03G011460 vs. TrEMBL
Match: A0A151RKJ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MT E+ATQ++  E S+ +WE  Q L    +++   FL+  F +TRKG  +M EY   MK 
Sbjct: 90  MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYFTKMKE 149

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
            +D+L  A S V T  LV+Q L GLD +YNP+V  L  K   TW+EMQ +LLTYE
Sbjct: 150 IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYE 204

[Close]

BLAST of ClCG03G011460 vs. TrEMBL
Match: A0A0A0L1H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAI-QKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMK 60
           MT E+A Q+M +  +KDLWEAI Q    VQS+ EE+FL+QT Q TRK N +M +YL + K
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61  MHSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKP 101
           M++DNL Q +S VP + ++S VLL L+E YN V+A +QGKP
Sbjct: 61  MNADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKP 100

[Close]

BLAST of ClCG03G011460 vs. NCBI nr
Match: gi|700210588|gb|KGN65684.1| (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 4.0e-35
Identity = 70/116 (60.34%), Postives = 92/116 (79.31%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           +TPE+  Q++G+  +KD+WEA    F V+S+ EEDFLRQTFQ TRKGN  M +YLR+MK 
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYER 117
           ++DNLGQAES +P R L+SQVLLGLDE YNPV+  +QGKPE +WL+MQ +LL +E+
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

[Close]

BLAST of ClCG03G011460 vs. NCBI nr
Match: gi|700188770|gb|KGN44003.1| (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
          MTPE+A Q+MG+  +KDLWEAIQ LF VQ + EEDFLR TFQ T+KGN +M +YL  MK 
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATL 97
          + DNL QA SHVP   L+SQV+LGLDE YNPV A +
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of ClCG03G011460 vs. NCBI nr
Match: gi|1012339207|gb|KYP50444.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 108.2 bits (269), Expect = 9.6e-21
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MT E+ATQ++  E S+ +WE  Q L    +++   FL+  F +TRKG  +M EYL  MK 
Sbjct: 1   MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
            +D+L  A S V T  LV+Q L GLD +YNP+V  L  K   TW+EMQ +LLTYE
Sbjct: 61  IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYE 115

[Close]

BLAST of ClCG03G011460 vs. NCBI nr
Match: gi|1012331601|gb|KYP43069.1| (hypothetical protein KK1_035512 [Cajanus cajan])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAIQKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMKM 60
           MT E+ATQ++  E S+ +WE  Q L    +++   FL+  F +TRKG  +M EY   MK 
Sbjct: 90  MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYFTKMKE 149

Query: 61  HSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKPETTWLEMQLELLTYE 116
            +D+L  A S V T  LV+Q L GLD +YNP+V  L  K   TW+EMQ +LLTYE
Sbjct: 150 IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYE 204

[Close]

BLAST of ClCG03G011460 vs. NCBI nr
Match: gi|700199274|gb|KGN54432.1| (hypothetical protein Csa_4G329050 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MTPEIATQVMGYEKSKDLWEAI-QKLFDVQSKTEEDFLRQTFQQTRKGNFRMSEYLRLMK 60
           MT E+A Q+M +  +KDLWEAI Q    VQS+ EE+FL+QT Q TRK N +M +YL + K
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61  MHSDNLGQAESHVPTRPLVSQVLLGLDEDYNPVVATLQGKP 101
           M++DNL Q +S VP + ++S VLL L+E YN V+A +QGKP
Sbjct: 61  MNADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKP 100

The following BLAST results are available for this feature:

BLAST of ClCG03G011460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB7_CUCSA	2.8e-35	60.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1	[more]
A0A0A0K3F9_CUCSA	1.4e-26	63.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1	[more]
A0A151S6M8_CAJCA	6.7e-21	46.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RKJ3_CAJCA	2.0e-20	46.09	Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1	[more]
A0A0A0L1H3_CUCSA	1.8e-18	53.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1	[more]

BLAST of ClCG03G011460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210588\|gb\|KGN65684.1\|	4.0e-35	60.34	hypothetical protein Csa_1G496800 [Cucumis sativus]	[more]
gi\|700188770\|gb\|KGN44003.1\|	2.0e-26	63.54	hypothetical protein Csa_7G091720 [Cucumis sativus]	[more]
gi\|1012339207\|gb\|KYP50444.1\|	9.6e-21	46.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012331601\|gb\|KYP43069.1\|	2.8e-20	46.09	hypothetical protein KK1_035512 [Cajanus cajan]	[more]
gi\|700199274\|gb\|KGN54432.1\|	2.6e-18	53.47	hypothetical protein Csa_4G329050 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G011460.1	ClCG03G011460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..112 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G011460	Cucurbita maxima (Rimu)	cmawcgB060
ClCG03G011460	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G011460	Cucurbita moschata (Rifu)	cmowcgB052
ClCG03G011460	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G011460	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G011460	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G011460	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G011460	Melon (DHL92) v3.5.1	mewcgB247
ClCG03G011460	Watermelon (97103) v1	wcgwmB228
ClCG03G011460	Cucurbita pepo (Zucchini)	cpewcgB326
ClCG03G011460	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G011460	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G011460	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G011460	Melon (DHL92) v3.6.1	medwcgB239
ClCG03G011460	Silver-seed gourd	carwcgB0270
ClCG03G011460	Silver-seed gourd	carwcgB0890
ClCG03G011460	Cucumber (Chinese Long) v3	cucwcgB041
ClCG03G011460	Watermelon (97103) v2	wcgwmbB186
ClCG03G011460	Wax gourd	wcgwgoB371
ClCG03G011460	Cucumber (Gy14) v1	cgywcgB607
ClCG03G011460	Cucumber (Gy14) v1	cgywcgB677