ClCG03G011030 (gene) Watermelon (Charleston Gray)

NameClCG03G011030
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr03 : 20394993 .. 20395658 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCGTAAGATGCTTCCATATCTATCAAAATTAGAGCTTCTAGACATATCCAATTACAAATGTTGGTCTCAAAAGCTTCTCATCTTCTTCGAGCAATTGCAAGTCGATTACATCCTCATCGCCAACAGATCTGATGAAAGTAAGGCTACTAACAAAGGTAAATGTATTGTGGTCACTGATCTGGACAATTCCAAAGTCACAAATTCGTTAGAATCTAGTCAGTCCAGATCTGAACCTGCTATGGATCTAGACAAATTTGAGAAAGATAATAAGACAATCCGTGGTCATTTGCTCAATCATATGACGGACTCGTTATTTGATCTCTTCGTGGTCCAGAAGTCAACAAAGACAATATGGGACACCCACTCTAGAATTAAGGTATGGAGGAGATGATGTAGGTCGTAAGAAGTATGTCGTTGGAAAGTGGTTGCAATGCTAGATGAAAGACGAGAAACCAATTGTAGATGAAGTGCATGAATATGAGAATCTGGTGGCGAACATTCTATCCGAAGGTATGAACATGTGCAAAGTTCTCCAAGCGAACGTACTGCTTAAGAAATTTCCATCGTCCTGGAGTGATTACAGAAATCACCAAAACACAAGAAGAAAGATTTGACACTGCAAGAATTGATCACTTGCATGCGCACGAAAGAAGCAAATTGA

mRNA sequence

ATGGACCGTAAGATGCTTCCATATCTATCAAAATTAGAGCTTCTAGACATATCCAATTACAAATGTTGGTCTCAAAAGCTTCTCATCTTCTTCGAGCAATTGCAAGTCGATTACATCCTCATCGCCAACAGATCTGATGAAAGTAAGGCTACTAACAAAGGTAAATGTATTGTGGTCACTGATCTGGACAATTCCAAAGTCACAAATTCGTTAGAATCTAGTCAGTCCAGATCTGAACCTGCTATGGATCTAGACAAATTTGAGAAAGATAATAAGACAATCCGTGGTCATTTGCTCAATCATATGACGGACTCGTTATTTGATCTCTTCGTGGTCCAGAAGTCAACAAAGACAATATGGGACACCCACTCTAGAATTAAGATGAAAGACGAGAAACCAATTGTAGATGAAGTGCATGAATATGAGAATCTGGTGGCGAACATTCTATCCGAAGGTATGAACATGTGCAAAGTTCTCCAAGCGAACAAATCACCAAAACACAAGAAGAAAGATTTGACACTGCAAGAATTGATCACTTGCATGCGCACGAAAGAAGCAAATTGA

Coding sequence (CDS)

ATGGACCGTAAGATGCTTCCATATCTATCAAAATTAGAGCTTCTAGACATATCCAATTACAAATGTTGGTCTCAAAAGCTTCTCATCTTCTTCGAGCAATTGCAAGTCGATTACATCCTCATCGCCAACAGATCTGATGAAAGTAAGGCTACTAACAAAGGTAAATGTATTGTGGTCACTGATCTGGACAATTCCAAAGTCACAAATTCGTTAGAATCTAGTCAGTCCAGATCTGAACCTGCTATGGATCTAGACAAATTTGAGAAAGATAATAAGACAATCCGTGGTCATTTGCTCAATCATATGACGGACTCGTTATTTGATCTCTTCGTGGTCCAGAAGTCAACAAAGACAATATGGGACACCCACTCTAGAATTAAGATGAAAGACGAGAAACCAATTGTAGATGAAGTGCATGAATATGAGAATCTGGTGGCGAACATTCTATCCGAAGGTATGAACATGTGCAAAGTTCTCCAAGCGAACAAATCACCAAAACACAAGAAGAAAGATTTGACACTGCAAGAATTGATCACTTGCATGCGCACGAAAGAAGCAAATTGA

Protein sequence

MDRKMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLDNSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWDTHSRIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQANKSPKHKKKDLTLQELITCMRTKEAN
BLAST of ClCG03G011030 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.9e-43
Identity = 105/221 (47.51%), Postives = 133/221 (60.18%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLD 63
           K+LP LSKLE LD +NY+ WSQKLLIFF+QL+VDY+L  +       T        T  D
Sbjct: 8   KILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTS-----TSSD 67

Query: 64  NSKVTNSLES----SQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTI 123
               T  L +     Q + +  +D +K+ KDNKT+RGHLLNHM+D +FDLFVVQKS K I
Sbjct: 68  PESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDI 127

Query: 124 WDTHS-------------------RIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQ 183
           W T                     + +M D+KP+V+++HEYENLV N+LSEGM MC++LQ
Sbjct: 128 WSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQ 187

Query: 184 AN----KSP----------KHKKKDLTLQELITCMRTKEAN 188
           AN    K P          KHKKKDL L ELI+ MRT+EAN
Sbjct: 188 ANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEAN 223

BLAST of ClCG03G011030 vs. TrEMBL
Match: V4MRG2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027475mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 58/199 (29.15%), Postives = 99/199 (49.75%), Query Frame = 1

Query: 3   RKMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYIL-IANRSDESKATNKGKCIVVTD 62
           R+M     KLE  +  ++K W +K+   F  L V Y+L +  R+    A N+        
Sbjct: 7   REMTLKFEKLEKFEGIDFKRWQKKMHFLFTTLNVAYVLSMPMRTVPEDAENE-------- 66

Query: 63  LDNSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWD 122
                   SLE  ++R +P     K+EKD+    GH+LN M+DSLFD++   KSTK +WD
Sbjct: 67  --------SLE--ETRKQP-----KWEKDDYICHGHILNGMSDSLFDVYQNFKSTKELWD 126

Query: 123 T-HSRIKMKD---EKPIVDEVHEYENLVANILSEGMNMCKVLQANKSP----------KH 182
              S+   +D   +K +V+  + Y+      + E + +  ++  +K P          KH
Sbjct: 127 ALESKYMAEDASSKKFLVNNFNNYKMSDCRPMDESILVSSII--DKLPPSWKDFKHMLKH 180

Query: 183 KKKDLTLQELITCMRTKEA 187
           KK++L+L +L + +R +E+
Sbjct: 187 KKEELSLVQLGSHLRIEES 180

BLAST of ClCG03G011030 vs. TrEMBL
Match: A0A0S3SC24_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.06G161800 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 47/216 (21.76%), Postives = 86/216 (39.81%), Query Frame = 1

Query: 3   RKMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDL 62
           R+M     KL+  +   ++ W +K+      L + Y+L + +  ES+             
Sbjct: 5   REMSANFHKLDKFEGVGFRRWQKKMHFLLSALNMAYVLSSPQPKESE------------- 64

Query: 63  DNSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWD- 122
                  +LE  + R+       K+E D+   RGH+LN M+D LFD++    S K +WD 
Sbjct: 65  -----NETLEEQRKRN-------KWENDDYVCRGHILNGMSDPLFDIYQYVDSAKELWDQ 124

Query: 123 ------------------THSRIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVL---- 182
                               +  KM D +PI+++ HE + ++ +     + M +      
Sbjct: 125 LESKYISEDASSKKFLVSNFNNYKMIDARPIMEQFHEIQRILGSFKQHNIAMDETFIVSS 184

Query: 183 ----------QANKSPKHKKKDLTLQELITCMRTKE 186
                         S KH K D+ +++L   +R +E
Sbjct: 185 IIDKLPPNWKDVRNSLKHNKDDMNVEQLAAHLRIEE 195

BLAST of ClCG03G011030 vs. TrEMBL
Match: A0A0S3RG96_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02G242200 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 45/208 (21.63%), Postives = 82/208 (39.42%), Query Frame = 1

Query: 11  KLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLDNSKVTNS 70
           KL+  +   ++ W +K+      L + Y+L + +  E K                    +
Sbjct: 13  KLDKFEGVGFRRWQKKMHFLLSALNMAYVLSSPQPKERK------------------NET 72

Query: 71  LESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWD--------- 130
           LE  + R+       K+E D+   RGH+LN M+D LFD++    S K +WD         
Sbjct: 73  LEEQRKRN-------KWENDDYVCRGHILNGMSDPLFDIYQYVDSAKELWDQLESKYISE 132

Query: 131 ----------THSRIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVL------------ 186
                       +  KM D +PI+++ HE + ++ +     + M +              
Sbjct: 133 DASSKKFLVSNFNNYKMIDARPIMEQFHEIQRILGSFKQHNIAMDETFIVSSIIDKLPPN 192

BLAST of ClCG03G011030 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 104/219 (47.49%), Postives = 134/219 (61.19%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIAN--RSDESKATNKGKCIVVTD 63
           K+LP LSKLE LD +NY+ WSQKLLIFFEQL+VDY+L  +   SD    T+        +
Sbjct: 8   KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSN---PE 67

Query: 64  LDNSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWD 123
                +T    + Q + +  +D +K+ KDNKT+RGHLLNHM+D +FDLFVVQKS K IW 
Sbjct: 68  SSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWS 127

Query: 124 THS-------------------RIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQAN 183
           T                     + +M D+KP+V+++HEYENLVAN+LSE M MC++LQAN
Sbjct: 128 TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEILQAN 187

Query: 184 --------------KSPKHKKKDLTLQELITCMRTKEAN 188
                            KHKKKDL LQELI+ MRT+EAN
Sbjct: 188 VLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

BLAST of ClCG03G011030 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 182.2 bits (461), Expect = 8.4e-43
Identity = 105/221 (47.51%), Postives = 133/221 (60.18%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLD 63
           K+LP LSKLE LD +NY+ WSQKLLIFF+QL+VDY+L  +       T        T  D
Sbjct: 8   KILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTS-----TSSD 67

Query: 64  NSKVTNSLES----SQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTI 123
               T  L +     Q + +  +D +K+ KDNKT+RGHLLNHM+D +FDLFVVQKS K I
Sbjct: 68  PESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDI 127

Query: 124 WDTHS-------------------RIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQ 183
           W T                     + +M D+KP+V+++HEYENLV N+LSEGM MC++LQ
Sbjct: 128 WSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQ 187

Query: 184 AN----KSP----------KHKKKDLTLQELITCMRTKEAN 188
           AN    K P          KHKKKDL L ELI+ MRT+EAN
Sbjct: 188 ANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEAN 223

BLAST of ClCG03G011030 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 106/229 (46.29%), Postives = 135/229 (58.95%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIAN------------RSDESKAT 63
           K+LP LSKLE LD +NY+ WSQKLLIFFEQLQVDY+L  +             SD   +T
Sbjct: 8   KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLQVDYVLTTDLPSSDPPTTTSTSSDPESST 67

Query: 64  NKGKCIVVTDLDNSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFV 123
                + VTD             Q + +  +D +K+ KDNKT+RGHLLNHM+D +F+LFV
Sbjct: 68  GPPTTVAVTD-------------QVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFNLFV 127

Query: 124 VQKSTKTIWDTHS-------------------RIKMKDEKPIVDEVHEYENLVANILSEG 183
           VQK TK IW T                     + +M D+KP+V+++HEYENLVAN++SEG
Sbjct: 128 VQKFTKDIWSTLESQYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVMSEG 187

Query: 184 MNMCKVLQAN----KSP----------KHKKKDLTLQELITCMRTKEAN 188
           M M ++LQAN    K P          KHKKKDL LQELI+ M T+EAN
Sbjct: 188 MKMYEILQANVLLEKFPPSWNDYCNHLKHKKKDLKLQELISHMGTEEAN 223

BLAST of ClCG03G011030 vs. NCBI nr
Match: gi|698485788|ref|XP_009789656.1| (PREDICTED: uncharacterized protein LOC104237252 [Nicotiana sylvestris])

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40
Identity = 103/217 (47.47%), Postives = 128/217 (58.99%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLD 63
           K LP LSKLE LD +NYK WSQKLLIFFEQL+VDYIL  +   +    N     ++ D D
Sbjct: 7   KTLPDLSKLEPLDGNNYKRWSQKLLIFFEQLEVDYILFNDPPTDIVTDNSNSANIIVDDD 66

Query: 64  NSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWDTH 123
            +K                   KFEKDNK +RGHLLNHMT+ LFDLF+  KS K IWD+ 
Sbjct: 67  ATK------------------KKFEKDNKIVRGHLLNHMTNPLFDLFINYKSAKVIWDSL 126

Query: 124 S-------------------RIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQAN-- 183
                               + +M D+KPI+++VHEYENL A++L+E M MC++LQAN  
Sbjct: 127 EKKYGRDDAGKKKYVIEKWIKFQMVDDKPIMEQVHEYENLTADVLNESMEMCEILQANVL 186

Query: 184 --KSP----------KHKKKDLTLQELITCMRTKEAN 188
             K P          KHKKK+LTLQELI+ MRT+EAN
Sbjct: 187 LEKFPPSWSDYRNQLKHKKKNLTLQELISHMRTEEAN 205

BLAST of ClCG03G011030 vs. NCBI nr
Match: gi|747058586|ref|XP_011075636.1| (PREDICTED: uncharacterized protein LOC105160070 [Sesamum indicum])

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-40
Identity = 106/217 (48.85%), Postives = 130/217 (59.91%), Query Frame = 1

Query: 4   KMLPYLSKLELLDISNYKCWSQKLLIFFEQLQVDYILIANRSDESKATNKGKCIVVTDLD 63
           K LP LSKLE LD  NYK WSQKLLIFFEQL VDY+L  N  +            ++ L 
Sbjct: 7   KTLPDLSKLEPLDGINYKRWSQKLLIFFEQLDVDYVLFQNPPETPAE--------ISTLA 66

Query: 64  NSKVTNSLESSQSRSEPAMDLDKFEKDNKTIRGHLLNHMTDSLFDLFVVQKSTKTIWDTH 123
            +      E + ++SE    L K+++DNKT+RGHLLNHM +SLFDLFV  KS K IW T 
Sbjct: 67  ITAAAIPAEGTITKSEHKTKL-KYDRDNKTVRGHLLNHMNNSLFDLFVNYKSAKEIWTTM 126

Query: 124 S-------------------RIKMKDEKPIVDEVHEYENLVANILSEGMNMCKVLQAN-- 183
                               + +M DEKPI+D+++EYENLV  +LSEGM MC++LQAN  
Sbjct: 127 EARYGGDDAGRKKYVVGKWLQFQMVDEKPIMDQIYEYENLVTEVLSEGMKMCEILQANVL 186

Query: 184 --KSP----------KHKKKDLTLQELITCMRTKEAN 188
             K P          KHKKKDLTLQELI+ MRT+EAN
Sbjct: 187 LEKFPPTWSEYRNHLKHKKKDLTLQELISYMRTEEAN 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBG5_CUCME5.9e-4347.51Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
V4MRG2_EUTSA2.8e-0829.15Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027475mg PE=4 SV=1[more]
A0A0S3SC24_PHAAN5.2e-0721.76Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.06... [more]
A0A0S3RG96_PHAAN2.6e-0621.63Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02... [more]
Match NameE-valueIdentityDescription
gi|659113205|ref|XP_008456453.1|2.9e-4347.49PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
gi|307135946|gb|ADN33807.1|8.4e-4347.51ty1-copia retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659102488|ref|XP_008452160.1|1.2e-4146.29PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo][more]
gi|698485788|ref|XP_009789656.1|1.3e-4047.47PREDICTED: uncharacterized protein LOC104237252 [Nicotiana sylvestris][more]
gi|747058586|ref|XP_011075636.1|1.8e-4048.85PREDICTED: uncharacterized protein LOC105160070 [Sesamum indicum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011030.1ClCG03G011030.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None