ClCG03G010810 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G010810
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 19796856 .. 19798524 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGTGAACTCTAACTTGGTACTATGAGTTAAACTTGGAGCCTAGTATGTTAGACTCCTAGGTTAAGGGTTGTTAATTTGACTAAGTGTTAGAAGAGAAGGTTAGAAGCATGAGGCAAAATATGAAAAGTTCAACTCATCATCCTTAAAACTAAGGCTGGAAGCATGGCCTAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGTAACTATGAGTATTTTTCTTTTTAGAGTTAATGTTATTTTCATACATAATAGCGATGTTTATATGGTGAGAAAAGGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGTCGGAGGATCTATAGATCTAGAATCCGAGTTTGTGGCGAAAATCTCATATGATGGTCAGAGAGTCACAGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGGTAGGTTTATATGCACATAGAGAAAATGACGGCTTTCTATGCAAGGTAAAGCCAATAGGAAGTGGATGCGGTGAGGTTTGAGTAGATAACCTCATTATGATGTTTTAATGTTTGAGTTATTTTATTAGGAAGGGTCGAGAGAAACCTATGTTTTTATTTCTTCACCACTACTGGGCTTCTAGATCATTATTTTCTTTTATGTTTTTCTTTCTCGGATAGTAGAGAAGTCCTGGTTGCCGCGTGAAATCGAGGTCTACCACAGGATACCTGTACTTTCCAATAGATAGAGTTGGTTTTCGAAAAAAGTTGTAATCTTGTTAAAGGATTGTATAAACATTAAGTGAATTGTTTGTTTTTCCATACTTGCTTCTTAAGCCTTGGAATGGGTGGTTATATGAGAATAGTATGAGATGGATAGTACGCATCACAAAAGGGTGATGTTTGTTGTCTTCACGCCTCCTCTCAAGTTAAAAGTGGTTAATTTGGGAGGGGTGTGACAAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGGTTGAGGGAATCTAGAAATGGATTAAAACTAGGACTTTAGAAACAGGAAATAAAATCTGGATAGAATAACATTGTTATTTGCTAATGTGTTTCATATGGTATAAGAAGATGTTTAGAAAAAGCAGACTTTGCAGTTAACCTGAGGTTAGGACTCATGATGCTACCATGAGGTTGGTTGAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGGTTCACTCAACATTTAGCTGATGGATTAGGTGCAGCTTGAGCAGATCCGAAAAAGAGATACGAAATTGAAAGGCTAAAAAGGCCTTGAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

mRNA sequence

ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

Coding sequence (CDS)

ATGGACAATGCTTTGAGAATGGAAGTTAGCTTAGTTTTGCAAATGGAAACTATGAGGGAGGAGGACTTGGTATGGGGAAGTTGGACGCATGGTTTAGAGGGCTTAGAGACCAAGTCCTTACCTGGAACGCCTCACAACATGGTTAGAGGATCTTTGGATCTAGTTTCTGAACCTGTGACGAAGCTACGCATAGGATGGGATCTAGATTTTAAGCCTGTAAGAAGAACCTCACGTGGGATGGTTAGAGGATCGACAAATCTAGCTTTTGAGCCCATAAGAGTTGGTATTAGAGCAAAGGTTTGCGGAAAACTTGGAAAAGTTGGAAATTTAGGAATCCTTAAGAATGCATTAGGGAAAGATAGTCAAGAAAGTGAGGGTGAGTCAAGTCATCCGCAGGTAAGAGTCGGAGCGGAGGAGGAAATTTTAGAAAGAGCAACAGTGTTTGCGGGGATTGCAGATCCAACCCTGGCTGAGGCTTGGATGAATTTACTTAAAGAATGTTTCAGGGTCATGAGGTGTCTAAAGAATAGGAAGGTGACATTAGTCACCTTTTTGCTCCAAAAGGGGGCAGAGGATTGGTGA

Protein sequence

MDNALRMEVSLVLQMETMREEDLVWGSWTHGLEGLETKSLPGTPHNMVRGSLDLVSEPVTKLRIGWDLDFKPVRRTSRGMVRGSTNLAFEPIRVGIRAKVCGKLGKVGNLGILKNALGKDSQESEGESSHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW
Homology
[Close]
BLAST of ClCG03G010810 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 1 

Query: 120 DSQESEGESSHPQVRVGAEEEILER-----------------------------ATVFAG 179
           +S+E + ESS P V    EE++L+R                             +T FA 
Sbjct: 24  ESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFAR 83

Query: 180 IADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
             +P  AEAW+ L+++CFRVMRC ++RKV L  FLLQ GAEDW
Sbjct: 84  TTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDW 126

[Close]
BLAST of ClCG03G010810 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 145 ATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
           AT FA   DPT  E WMN+L++CF+VMRCL +RKV L TFLL+KGA+ W
Sbjct: 79  ATTFARTTDPTDGEGWMNVLEKCFKVMRCLDDRKVELATFLLKKGADYW 127

[Close]
BLAST of ClCG03G010810 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1 

Query: 102 GKLGKVGNLGILKNALGKD--SQESEGESSHPQVRVGAEEEILERATV------------ 161
           GK  ++ +LG  +   G+D  ++ESEGESSH Q  +  +E++L + T             
Sbjct: 5   GKKRRLKDLGTQQIPGGRDLENEESEGESSHQQGDMTVDEKLLNKITEGITTGMRSLNNN 64

Query: 162 ---------FAGIADPTLAEAWMN--------LLKECFRVMRCLKNRKVTLVTFLLQKGA 194
                       +   T A             +L++CF+VMRCL +RKV L TFLL+KGA
Sbjct: 65  LEKTFGIERLKALGATTFARTTDPTDGEGWMNVLEKCFKVMRCLDDRKVELATFLLKKGA 124


HSP 2 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 129 SHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQK 188
           S P+   G E      ATVF G  DP  AE W+N+L++CF VM C + RKV L TFLLQK
Sbjct: 58  SDPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQK 117

Query: 189 GAEDW 194
            AE W
Sbjct: 118 EAEGW 122

[Close]
BLAST of ClCG03G010810 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 145 ATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQKGAEDW 194
           ATVF G  DP  AE W+N+L++CF VM C + +KV L TFLLQK AE W
Sbjct: 59  ATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGW 107

[Close]
BLAST of ClCG03G010810 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 129 SHPQVRVGAEEEILERATVFAGIADPTLAEAWMNLLKECFRVMRCLKNRKVTLVTFLLQK 188
           S P+ + G E      AT F G  +P  AEAW+ L+++CFRV RC ++RKV L +FLLQ 
Sbjct: 81  SDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQN 140

Query: 189 G----AEDW 194
           G     EDW
Sbjct: 141 GGGAKGEDW 149

The following BLAST results are available for this feature:
BLAST of ClCG03G010810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068829|ref|XP_008446512.1|2.6e-1038.83PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|4.8e-0963.27PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|1.2e-0432.52PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659087174|ref|XP_008444312.1|3.5e-0759.18PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
gi|659072264|ref|XP_008464580.1|4.5e-0746.38PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G010810.1ClCG03G010810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G010810Watermelon (97103) v2wcgwmbB186
ClCG03G010810Wax gourdwcgwgoB366
ClCG03G010810Cucumber (Gy14) v1cgywcgB605
ClCG03G010810Cucurbita maxima (Rimu)cmawcgB058
ClCG03G010810Cucurbita maxima (Rimu)cmawcgB108
ClCG03G010810Cucurbita moschata (Rifu)cmowcgB050
ClCG03G010810Cucurbita moschata (Rifu)cmowcgB098
ClCG03G010810Wild cucumber (PI 183967)cpiwcgB041
ClCG03G010810Cucumber (Chinese Long) v2cuwcgB038
ClCG03G010810Melon (DHL92) v3.5.1mewcgB239
ClCG03G010810Watermelon (97103) v1wcgwmB225
ClCG03G010810Cucurbita pepo (Zucchini)cpewcgB012
ClCG03G010810Cucurbita pepo (Zucchini)cpewcgB322
ClCG03G010810Bottle gourd (USVL1VR-Ls)lsiwcgB361
ClCG03G010810Cucumber (Gy14) v2cgybwcgB036
ClCG03G010810Melon (DHL92) v3.6.1medwcgB230
ClCG03G010810Silver-seed gourdcarwcgB0519
ClCG03G010810Silver-seed gourdcarwcgB0945
ClCG03G010810Cucumber (Chinese Long) v3cucwcgB041