ClCG03G010520 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010520
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DEA(D/H)-box RNA helicase family protein LENGTH=1113
Location	CG_Chr03 : 19020765 .. 19022075 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAAGTCTTACCAAGAAATCAAGAACAGCACTTTAATCTTCTGCACAATCAAGAACAATTCGACAATCCAATCCGCAGCCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGTATGAACAATTATCATCCAGTTTTTTAACAACACCATCCTCCTCATAGACCTTTTCTTCAAAAATGGGTTGGTTTTGATCCTGACTCTTACGGTGAGAAAGTAAACAACCATCAATTTCAATATTACCAAAAGATTCAAGGAAACAGCCCTTACAATTTCATAAACAAGGTAAAACCTACAATTCCTTCCGAGCAGCAAACAAATACCACAAAATGTGGTTGGGTTTGATTCTGTAACATCAAAGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAGTAAAAGTCTTAAATGTTTTAGGTTGTTATTCGAATATGCTCCCAAAGGAACCAATTTTGACCGTTGTTGCTTGTCTCAATGTGAAAGACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGTGAGCCTATGGGGGATGGAAAGAAATTGAGAGGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

mRNA sequence

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAACCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

Coding sequence (CDS)

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAACCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

Protein sequence

MAGLQQAIEKLKLEVGRLINNPPIINQEAPTLNQENLDNRRQLQDIQQRQGNNQQPRTWEFPSRFSCVINKIAKNITGVINVLKGFKWIHPTIYKGFKKDQEVHQDPSFKEINWEEEVGWQGFSWFSYEHHENQHRFKNFKEWVQESFQDQMGIQPNVQEHVVVLQELQGNPHRIQNQMAMLQEHQDRNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMNFGGYNFDLNNFLSVQLVKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDELDENSMSWTFFIIFLFKM

Homology

[Close]

BLAST of ClCG03G010520 vs. Swiss-Prot
Match: DEXH5_ARATH (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana GN=At2g01130 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMN-FGG----------YNFDLNNFLSVQL 247
           R+PFLTP +KKD  + AKSQF +DHSDHLA++  + G          Y++   NFLS+Q 
Sbjct: 739 RDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQS 798

Query: 248 VKDMDSLRKLLFSLLKDIGLVKG 260
           ++ +DSLRK  FSLLKD GL+ G
Sbjct: 799 LRAIDSLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of ClCG03G010520 vs. Swiss-Prot
Match: DEXH3_ARATH (DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana GN=At1g48650 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-09
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIMN-----------FGGYNFDLNNFLSVQ 247
           R+PFL P +KKD  +TA+S+F  +D+SDHL ++              GY++   NFLS Q
Sbjct: 819 RDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQ 878

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            +K MDS+RK  F+LLK+  L+
Sbjct: 879 TLKAMDSMRKQFFNLLKEASLI 900

[Close]

BLAST of ClCG03G010520 vs. TrEMBL
Match: A0A0A0KWI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611030 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 793 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQS 852

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 853 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 887

[Close]

BLAST of ClCG03G010520 vs. TrEMBL
Match: A0A067KT31_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.8e-15
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPL+KKD  + AKSQF +D+SDHLA++           +F GY++   NF+SVQ 
Sbjct: 821 RDPFLTPLDKKDLAEAAKSQFSRDYSDHLALVQAYEGWKDAERDFAGYDYCWKNFISVQS 880

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLLKD GLV     TYN  S +E
Sbjct: 881 MKAIDSLRKEFFSLLKDAGLVDSNTTTYNSWSYEE 915

[Close]

BLAST of ClCG03G010520 vs. TrEMBL
Match: A0A068TXG5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032751001 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.8e-14
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAI-----------MNFGGYNFDLNNFLSVQL 247
           R+PFL+PL+KKD  + AK+QF QD+SDHLA+           M+  GY +   NFLS Q 
Sbjct: 791 RDPFLSPLDKKDLAEAAKAQFSQDYSDHLALVRAYEGWKDSEMDLAGYEYCWKNFLSAQS 850

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  + LLKD GLV     TYN  S DE
Sbjct: 851 MKAIDSLRKEFYLLLKDTGLVDSNSTTYNTWSYDE 885

[Close]

BLAST of ClCG03G010520 vs. TrEMBL
Match: W9RD27_9ROSA (Putative ATP-dependent RNA helicase DHX36 OS=Morus notabilis GN=L484_025846 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPL+KKD  + AKSQF +D+SDHLAI+           ++ GY++   NFLS Q 
Sbjct: 481 RDPFLTPLDKKDLAEAAKSQFSRDYSDHLAIIRAYEGWKKAERDYAGYDYCWKNFLSAQS 540

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +D+LRK  FSLL+D GLV     +YN    DE
Sbjct: 541 MKAIDALRKEFFSLLRDTGLVDADPTSYNAWGYDE 575

[Close]

BLAST of ClCG03G010520 vs. TrEMBL
Match: D7T8X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04360 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMNFG-----------GYNFDLNNFLSVQL 247
           R+PFLTPL+KKD  + AK+QF  D+SDHLA++              GY +   NFLS Q 
Sbjct: 803 RDPFLTPLDKKDLAEAAKAQFSHDYSDHLALVRAYEGWKDAEKDQIGYEYCWKNFLSAQS 862

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLLKD  LV G   TYN  S DE
Sbjct: 863 MKAIDSLRKEFFSLLKDTDLVDGNMATYNAWSYDE 897

[Close]

BLAST of ClCG03G010520 vs. TAIR10
Match: AT2G01130.1 (AT2G01130.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-15
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMN-FGG----------YNFDLNNFLSVQL 247
           R+PFLTP +KKD  + AKSQF +DHSDHLA++  + G          Y++   NFLS+Q 
Sbjct: 739 RDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQS 798

Query: 248 VKDMDSLRKLLFSLLKDIGLVKG 260
           ++ +DSLRK  FSLLKD GL+ G
Sbjct: 799 LRAIDSLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of ClCG03G010520 vs. TAIR10
Match: AT1G48650.2 (AT1G48650.2 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-11
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIMN-----------FGGYNFDLNNFLSVQ 247
           R+PFL P +KKD  +TA+S+F  +D+SDHL ++              GY++   NFLS Q
Sbjct: 819 RDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQ 878

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            +K MDS+RK  F+LLK+  L+
Sbjct: 879 TLKAMDSMRKQFFNLLKEASLI 900

[Close]

BLAST of ClCG03G010520 vs. TAIR10
Match: AT5G04895.1 (AT5G04895.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-07
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIMN-FGG----------YNFDLNNFLSVQ 247
           R+PFL P +KKD   +AK +F  +D+SDH+A++  F G          Y F   NFLS Q
Sbjct: 780 RDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQ 839

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            ++ + SLRK    +LK+ GLV
Sbjct: 840 TLQAIHSLRKQFNYILKEAGLV 861

[Close]

BLAST of ClCG03G010520 vs. TAIR10
Match: AT2G35920.1 (AT2G35920.1 RNA helicase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06
Identity = 35/96 (36.46%), Postives = 46/96 (47.92%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDH-SDHLAIMN-FGGY----------NFDLNNFLSVQ 247
           R+PF+ PL +K+    AK  F  D  SDH+A++  + GY          +F   NFLS  
Sbjct: 744 RSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPV 803

Query: 248 LVKDMDSLRKLLFSLLKDIGLV-KGFFNTYNISSLD 271
            ++ M+ +R     LL DIG V K   N YN  S D
Sbjct: 804 TLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYD 839

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: gi|778706098|ref|XP_011655799.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 793 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQS 852

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 853 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 887

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: gi|659091641|ref|XP_008446653.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 845 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 904

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 905 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: gi|659091639|ref|XP_008446652.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 845 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 904

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 905 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: gi|643726196|gb|KDP35004.1| (hypothetical protein JCGZ_09292 [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPL+KKD  + AKSQF +D+SDHLA++           +F GY++   NF+SVQ 
Sbjct: 821 RDPFLTPLDKKDLAEAAKSQFSRDYSDHLALVQAYEGWKDAERDFAGYDYCWKNFISVQS 880

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLLKD GLV     TYN  S +E
Sbjct: 881 MKAIDSLRKEFFSLLKDAGLVDSNTTTYNSWSYEE 915

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: gi|802620775|ref|XP_012075702.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPL+KKD  + AKSQF +D+SDHLA++           +F GY++   NF+SVQ 
Sbjct: 681 RDPFLTPLDKKDLAEAAKSQFSRDYSDHLALVQAYEGWKDAERDFAGYDYCWKNFISVQS 740

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLLKD GLV     TYN  S +E
Sbjct: 741 MKAIDSLRKEFFSLLKDAGLVDSNTTTYNSWSYEE 775

The following BLAST results are available for this feature:

BLAST of ClCG03G010520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEXH5_ARATH	1.3e-13	50.60	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana...	[more]
DEXH3_ARATH	1.5e-09	42.68	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana GN=At1g48650 P...	[more]

BLAST of ClCG03G010520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI1_CUCSA	4.4e-21	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611030 PE=4 SV=1	[more]
A0A067KT31_JATCU	2.8e-15	51.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1	[more]
A0A068TXG5_COFCA	6.8e-14	49.47	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032751001 PE=4 SV=1	[more]
W9RD27_9ROSA	1.2e-13	48.42	Putative ATP-dependent RNA helicase DHX36 OS=Morus notabilis GN=L484_025846 PE=4...	[more]
D7T8X8_VITVI	1.5e-13	50.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04360 PE=4 SV=...	[more]

BLAST of ClCG03G010520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01130.1	7.2e-15	50.60	DEA(D/H)-box RNA helicase family protein	[more]
AT1G48650.2	8.2e-11	42.68	DEA(D/H)-box RNA helicase family protein	[more]
AT5G04895.1	4.2e-07	41.46	DEA(D/H)-box RNA helicase family protein	[more]
AT2G35920.1	6.1e-06	36.46	RNA helicase family protein	[more]

BLAST of ClCG03G010520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706098\|ref\|XP_011655799.1\|	6.3e-21	60.00	PREDICTED: ATP-dependent RNA helicase DHX36 [Cucumis sativus]	[more]
gi\|659091641\|ref\|XP_008446653.1\|	6.3e-21	60.00	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo]	[more]
gi\|659091639\|ref\|XP_008446652.1\|	6.3e-21	60.00	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Cucumis melo]	[more]
gi\|643726196\|gb\|KDP35004.1\|	4.0e-15	51.58	hypothetical protein JCGZ_09292 [Jatropha curcas]	[more]
gi\|802620775\|ref\|XP_012075702.1\|	4.0e-15	51.58	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010520.1	ClCG03G010520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..21 scor
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 188..271 score: 5.5
None	No IPR available	PANTHER	PTHR18934:SF146	DEA(D/H)-BOX RNA HELICASE FAMILY PROTEIN	coord: 188..271 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G010520	Cla009538	Watermelon (97103) v1	wcgwmB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G010520	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G010520	Silver-seed gourd	carwcgB0519
ClCG03G010520	Silver-seed gourd	carwcgB0945
ClCG03G010520	Cucumber (Chinese Long) v3	cucwcgB041
ClCG03G010520	Watermelon (97103) v2	wcgwmbB186
ClCG03G010520	Wax gourd	wcgwgoB366
ClCG03G010520	Wax gourd	wcgwgoB369
ClCG03G010520	Cucumber (Gy14) v1	cgywcgB605
ClCG03G010520	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G010520	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G010520	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G010520	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G010520	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G010520	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G010520	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G010520	Cucurbita pepo (Zucchini)	cpewcgB012
ClCG03G010520	Cucurbita pepo (Zucchini)	cpewcgB322
ClCG03G010520	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G010520	Cucumber (Gy14) v2	cgybwcgB036