ClCG03G010450 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010450
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ty3-gypsy retrotransposon protein
Location	CG_Chr03 : 18775958 .. 18779206 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTCATGATGACTGATGCAAACATTAGTGAAGAAAGAATGGCTGAAGTAGAAAGGAAGATCGACATGCTGTTAAGAAAGATAAAAGAAAAAGATCAAGAAATTTCTTCTCTAAAGAATCAGATCGGTAGTCGTGATGTGACTGAGTCAAGTCAAACTCCTGCCATGAAAGAGAAGGGGAAGACTATTATGCACGAATATCAGTCGCAACATTTAGCTTTGATTGCCTCATTTTCCATCTAGCAACTTCAATATATGATTGTAAACTCCATCAGAATGCAATATGGTGGACCTACTCAAAATTCCCTTTTGTATCCAGGCCATATACTAAGAGGATCAACAATCTCGAGATGTCAAATGGATATCAACCACCAAAGTTTCAACAATTCAATGGGAAGAGTAATCCCAAACAACATATTGCTCATTTCATCGAGACCTGTCACAATGCTGGCACTAGAGAAGATCTACTAGTTAGTCAAGCAGTTCGTCCAAACACTGAAAGAGAATGCCTTTGACTGGTACACTGATCTCGAGCTAATAAGGCCTACATTGGAGAGCTTTAAGTCTCGGCTATATCAATCGTTGGAGAGCTCTAAGGCTCGACTATAAAGATTGACTCACTAAAGTGTCTGCTATCGAAATGTGCACCCAAGGCATGCATTAGGGACTTCTCTACATTCTGCAAGGAATAAAGCCTCGTACATTTGAAGAGTTGGCAACTTGGGCTTATGATATGGATTTAAGTACAGTTAACAGAGGGAACAAAGATCTTCTTGCTACAGACATCAAGAAGGAAAATAAAGAAGTTAATGTTGGGTTGTATGTCCTAAAAACTTGTAGTTTTTGTAAATAAATGAATTTCAGTACATATGAAGTTATTCAAGTGAATTAATTATTTATTAACTTTAAATCCAATTAAACTACGAACCATTGGCTATTATCATGAGTACTTGGACTTTATGTGGAGACATAAACAGGATCAAGTTCGAGTAAGTAGCCTAAATAAGTCTATTGTACATGGATCAGGTTGGGTACCTATTCCTGGAGACACTACTGAATACAACCCGCTTCATGATTGTTACAAATGTTGTAAGGTGTCATAAATGAAGTGATCCTGATTTGTTCATGTAGAGACATGTGAGCGGGGGTATTCTATATAATAAGATTGTGTAAGACTGACCCTGAAATAATCATTGTTATGTATTAACACCGCTTACGATTAACACTGATTAATTTCACTTATCAATGACCTAGATAACATGATCTGAATCTTGAGCTATCTATAAACTCCTGTTTATTCAGAATTATCCCTTGATCTGCATAGGTGAGAGTAAGCTCAATAGCACTGCTCAACATTCCTCCTATTTCAGGGATAAGACCGGGTAGATAGTTGGGGACATAGCATTTGCCAAATGAAATTCACTCCTACCCAACCTAAGGATAGTAGAGAGGTTCTCTTAAGTATTGTTCCCAGGACTTGAACAAGGGGCCCCATCCTCTCACTGGCACGAGAAGGAATGGATTTAGTGATTAGATCCTAAATTAATTGTTCATTAGAGGGACGGTGGTACATAAGGAGAAAAAATGTAATTCAGAGGTAAATCGGTATTTGACCTAGCTGAAGTTATGAACGACCTGTGAAGGATTCACTTATCGATGGCGGTTATATCAAATGGACACAAATATATCTACAGTGAGGAGAGTGCAGCTACGGGCTTTAGTGGAGTATCTCGTTAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTGGCCAGTTAATATTGGATCGTTGGAGCTCATCATCTATAGGTCCATTAGGTCCCTCTACTAGCTCATAAATGGACTAAAATCTTAGATAGGTTGGTGAATAAGTTTGAACCGTTCAAATCTTGGCTTAAGGAATGAAAGTCAAATATATACGATATATCGCTGTTTAATTACGAATTAAACGTACAAATAGAGTTAATATGATTTAAATATTAATCATATAAACATGATTTAAATATTAATCATATGAATAGGGATTCATATCGGTTTTTAGAAAAATCGGGATAAGTGGGAAAAATAATAATATTTTATTATTTAATATTAAATTATTATTTAATTATTTTTTGAAATTAAAAATCAATTTTAATTCAATTTTTGGAAATTCATTGAAAATTGATTTTAAAATTGATTTTTAAAGATTGGATTTTCCTACTAAATAAGCTAAGAGCTTGGATGTCTTCTTCACAATTAACCAATAAATTAACCATTTTGTGTTATCAAATTTTGATGCAATTGAATTGCATGTTATTCTTTAATAAATAGAGATGATTTTGGCATAAAAATGGTTAAGAATTTTGTGAAATTCAAGGGTTAATTTTGCAAAATTCCATCCATTGTTCATCTTCTTCCCAACGTTCATTCCTTCTCAAATTCACCACAAATTTGGATCCCACCATCCAAATCTAAGCTTAGAGAATAGTAGAGAAGACTCTTGTGGTGGTATACAACCAAGTGGTGCTTAAATTCATCAAGAATTGAAGGAGAATCATGAGCTTCAAGGGTAAGTGTTCTTGAAACTTTGGTTTTTCTTTTTAATTGCATGTTTAATCCTCTAAATTGAGCATCTTAGAGTGAAAATTGATCAAATTAACTTCCGCTGCATATTCATTTATCAATCAGTTAAGAATATTGAGAAAACGCATAAAGGGACTGCGAAAGAGTCATTGTTTGTTAACTCCTTTCAAGCTCTTGAAGGGGAAAGAAAAGGAAATGCAGAGACGACAGGAAGAAGATGAAAGATGTCGTCCAATGTTGAAGGAGAGACATAAGATCTGCCCTTTTCTTGACTCTGACATTGTAGACATGTTAGGATAACTTCACGAAAACCACCTCACTCAATTACCAGAATATAAGTGGCTAGAAGAAATGAGAGGAGTTAATGATCCCAACTATTGCAAGTATCACCGAGTCATTAGGCATCTAGTAGAAAAGTGCTCGTCCTAAAAGAGCAGATTATGAAGTTAGCCAAAGAAAAGAAGATTGAGTTAGATCTCGATGAGGTGGCTCCATCAAACTACGCTACGATGGCAACAAATCTCAACGACCAAATATATGCAAGCCCACCTCATGCCCATGAAGCAAGTTTGATTCAGTTTGGAACTTGGTTATTTAGCTTCCTGCAGGAGTTCTCAAAAAAATGCCTGCAAAAGGAAACTTGATGCTGTTGAAAGTGAAGCCGAAGGATGGACTTTGGTGA

mRNA sequence

ATGTCTGTCATGATGACTGATGCAAACATTAGTGAAGAAAGAATGGCTGAAGTAGAAAGGAAGATCGACATGCTGTTAAGAAAGATAAAAGAAAAAGATCAAGAAATTTCTTCTCTAAAGAATCAGATCGGTAGTCGTGATGTGACTGAGTCAAGTCAAACTCCTGCCATGAAAGAGAAGGGGAAGACTATTATGCACGAATATCAGCCATATACTAAGAGGATCAACAATCTCGAGATGTCAAATGGATATCAACCACCAAAGTTTCAACAATTCAATGGGAAGAGTAATCCCAAACAACATATTGCTCATTTCATCGAGACCTGTCACAATGCTGGCACTAGAGAAGATCTACTAGTTAGTCAAGCAGGACTTCTCTACATTCTGCAAGGAATAAAGCCTCGTACATTTGAAGAGTTGGCAACTTGGGCTTATGATATGGATTTAAGTACAGTTAACAGAGGGAACAAAGATCTTCTTGCTACAGACATCAAGAAGGAAAATAAAGAAGTTAATGATCAAGTTCGAGTAAGTAGCCTAAATAAGTCTATTGTACATGGATCAGGTTGGGTACCTATTCCTGGAGACACTACTGAATACAACCCGCTTCATGATTGTTACAAATGTTGTAAGGGGAAAGAAAAGGAAATGCAGAGACGACAGGAAGAAGATGAAAGATGTCGTCCAATGTTGAAGGAGAGACATAAGATCTGCCCTTTTCTTGACTCTGACATTGCATCTAGTAGAAAAGTGCTCGTCCTAAAAGAGCAGATTATGAAGTTAGCCAAAGAAAAGAAGATTGAGTTAGATCTCGATGAGCTTCCTGCAGGAGTTCTCAAAAAAATGCCTGCAAAAGGAAACTTGATGCTGTTGAAAGTGAAGCCGAAGGATGGACTTTGGTGA

Coding sequence (CDS)

ATGTCTGTCATGATGACTGATGCAAACATTAGTGAAGAAAGAATGGCTGAAGTAGAAAGGAAGATCGACATGCTGTTAAGAAAGATAAAAGAAAAAGATCAAGAAATTTCTTCTCTAAAGAATCAGATCGGTAGTCGTGATGTGACTGAGTCAAGTCAAACTCCTGCCATGAAAGAGAAGGGGAAGACTATTATGCACGAATATCAGCCATATACTAAGAGGATCAACAATCTCGAGATGTCAAATGGATATCAACCACCAAAGTTTCAACAATTCAATGGGAAGAGTAATCCCAAACAACATATTGCTCATTTCATCGAGACCTGTCACAATGCTGGCACTAGAGAAGATCTACTAGTTAGTCAAGCAGGACTTCTCTACATTCTGCAAGGAATAAAGCCTCGTACATTTGAAGAGTTGGCAACTTGGGCTTATGATATGGATTTAAGTACAGTTAACAGAGGGAACAAAGATCTTCTTGCTACAGACATCAAGAAGGAAAATAAAGAAGTTAATGATCAAGTTCGAGTAAGTAGCCTAAATAAGTCTATTGTACATGGATCAGGTTGGGTACCTATTCCTGGAGACACTACTGAATACAACCCGCTTCATGATTGTTACAAATGTTGTAAGGGGAAAGAAAAGGAAATGCAGAGACGACAGGAAGAAGATGAAAGATGTCGTCCAATGTTGAAGGAGAGACATAAGATCTGCCCTTTTCTTGACTCTGACATTGCATCTAGTAGAAAAGTGCTCGTCCTAAAAGAGCAGATTATGAAGTTAGCCAAAGAAAAGAAGATTGAGTTAGATCTCGATGAGCTTCCTGCAGGAGTTCTCAAAAAAATGCCTGCAAAAGGAAACTTGATGCTGTTGAAAGTGAAGCCGAAGGATGGACTTTGGTGA

Protein sequence

MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMKEKGKTIMHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLLVSQAGLLYILQGIKPRTFEELATWAYDMDLSTVNRGNKDLLATDIKKENKEVNDQVRVSSLNKSIVHGSGWVPIPGDTTEYNPLHDCYKCCKGKEKEMQRRQEEDERCRPMLKERHKICPFLDSDIASSRKVLVLKEQIMKLAKEKKIELDLDELPAGVLKKMPAKGNLMLLKVKPKDGLW

Homology

[Close]

BLAST of ClCG03G010450 vs. TrEMBL
Match: M5WN26_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb022887mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.0e-29
Identity = 102/306 (33.33%), Postives = 153/306 (50.00%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKN----------------QIG 60
           M VM+T A   EE++A +   I  L + ++EKD +I+SL N                + G
Sbjct: 161 MQVMVTRAMSIEEQLAHMTEAITKLTKMVEEKDAQIASLINNKWEVHQDKEPSQDAHKKG 220

Query: 61  SRDVTESSQTPAMKEK---------GKTIMHEY-----------QPYTKRINNLEMSNGY 120
                ESS+   +              TI  +Y           +PYT+RI+NL M  GY
Sbjct: 221 PHHEAESSEKGLVGSLSVQQLQDMIADTIRVQYGAPSRDTLMYSKPYTRRIDNLRMPTGY 280

Query: 121 QPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLLVSQAGLLYILQGIKPRTFEELATWA 180
           QPPKFQQF+GK NPKQH+AHF+ETC+N+GT               +GIKPR FEELAT A
Sbjct: 281 QPPKFQQFDGKGNPKQHVAHFVETCNNSGT---------------EGIKPRMFEELATRA 340

Query: 181 YDMDLSTVNRGNKDLLATDIKKEN--KEVNDQVRVSSLNKSIVHGSGWVPIPGDTTEYNP 240
           +DM+LS  + G K  L  + +KE    +  D++      +++   +  VP+   T +   
Sbjct: 341 HDMELSIASHGGKHELVMEQRKEKVFGQKTDKLVKKPTKEAMTINT--VPVKISTRDK-- 400

Query: 241 LHDCYKCCKGKEKEMQRRQEEDERCRPMLKERHKICPFLDSDIASSRKVLVLKEQIMKLA 269
                   K + K M+  +E D R R + +   K  PF +SD+A   + L L+++++KL 
Sbjct: 401 --------KKEVKRMEPSREVDRRRRTLKELEEKTYPFPNSDVAGMLEDL-LEKKVIKLP 438

[Close]

BLAST of ClCG03G010450 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMK-- 60
           +SVMM D   +E  MAE+E+KI+ L++ ++E+D EI++LK+Q+ + +  ESSQT  +K  
Sbjct: 53  VSVMMIDVT-AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTT 112

Query: 61  EKGKTI--------MHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCH 120
           +KGK +            +PYTKRI+NL M  GYQPPKFQQF+GK NPKQHIAHF+ETC 
Sbjct: 113 DKGKNVYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCE 172

Query: 121 NAGTREDLLVSQAGLLYILQGIKPRTFEELATWAYDMD 149
           NAG+R D LV Q      ++ +K   FE    W  D++
Sbjct: 173 NAGSRGDQLVRQ-----FVRSLKGNAFE----WYTDLE 200

[Close]

BLAST of ClCG03G010450 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-14
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1


Query: 125 LLYILQGIKPRTFEELATWAYDMDLSTVNRGNKDLLATDIKKENKEVNDQVRVSS--LNK 184
           LLYILQGIKPRTFEELAT A+DM+ S  NRG KD L    + +  E+ND  ++++  LN+
Sbjct: 276 LLYILQGIKPRTFEELATRAHDMESSIANRGAKDFLVQRTRSDKNEINDTEKIANNVLNE 335

Query: 185 SIVHGSGWVPIPGDTTEYNPLHDCYKCCKGKEKEMQRRQEEDERCRPMLKERH-KICPFL 244
           S+V     +                   K KE + +R  + DE+  P L+ER  K+ PFL
Sbjct: 336 SMVVQETLLK---------------SFSKRKETKHERNHDGDEKRCPTLRERQKKVYPFL 395

Query: 245 DSDIASSRKVLVLKEQI 259
           DS++A+  + L+ K+ I
Sbjct: 396 DSNVANMLEQLIEKQLI 397

HSP 2 Score: 37.0 bits (84), Expect = 4.9e+01
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 1


Query: 250 KVLVLKEQIMKLAKEKKIELDLDEL 275
           K  VLKE+I+KLA+E KI+LD+DE+
Sbjct: 429 KCFVLKERILKLARENKIQLDIDEV 453

HSP 3 Score: 126.3 bits (316), Expect = 6.2e-26
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRD-VTESSQTPAMKE 60
           MSVM T     EE++AE+ R I  L + ++EKD +I+SL N++ ++D +T + +      
Sbjct: 98  MSVMTTGTTSIEEQLAEIARAIAKLTKTVEEKDMQIASLINKVETQDMITNTIKAQYGGP 157

Query: 61  KGKTIMHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLL 120
              T+M+  +PYTKRI+NL M  GYQPPKFQ F+GK NPKQH+AHF+ETC+NAGT  DLL
Sbjct: 158 SQSTLMYS-KPYTKRIDNLHMPMGYQPPKFQSFDGKDNPKQHVAHFVETCNNAGTDSDLL 217

Query: 121 VSQ 123
           V+Q
Sbjct: 218 VNQ 219

[Close]

BLAST of ClCG03G010450 vs. TrEMBL
Match: A5C4T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 1.6e+03
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1


Query: 250 KVLVLKEQIMKLAKEKKIELDLDEL 275
           K  +LK+ IMKL K+ +I LDLDE+
Sbjct: 413 KCFILKDLIMKLVKQGRIHLDLDEV 437

HSP 2 Score: 110.2 bits (274), Expect = 4.6e-21
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMKEK 60
           M VM TD    EE++ E+ R I  L + ++EKD +I+SL N++               E 
Sbjct: 22  MLVMATDTTSVEEQLVEMARAITKLTKTVEEKDMQIASLINKV---------------EA 81

Query: 61  GKTIMHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLLV 120
             T+M+  +PYTKRI+NL M  GYQPPKFQ F+GK NPKQH+AHF+ETC+NAG   D  +
Sbjct: 82  QSTLMYS-KPYTKRIDNLRMPMGYQPPKFQSFDGKGNPKQHVAHFVETCNNAGNAFDWYI 128

Query: 121 SQA 124
             A
Sbjct: 142 DLA 128

[Close]

BLAST of ClCG03G010450 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.3e-19
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 1


Query: 124 GLLYILQGIKPRTFEELATWAYDMDLSTVNRGNKDLLATDIKKENKEVNDQVRVSSLNKS 183
           GLLYILQGIKPRTFEELA  AYDM+LS  NRG  DLL  +I+KE KEV    +V      
Sbjct: 144 GLLYILQGIKPRTFEELAAKAYDMELSIANRGKNDLLVPEIRKEKKEVKSTQKV------ 203

Query: 184 IVHGSGWVPIPGDTTEYNPLHDCYKCCKGKEKEMQRRQEEDERCRPMLKER-HKICPFLD 243
                    + G T E   +         KEK+M++RQ+E E+  P LKER  K+ PF D
Sbjct: 204 ---------LKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGEKRCPTLKERQEKVYPFPD 263

Query: 244 SDIASSRKVLVLKEQIMKLAKEKK 267
           SD++     L LK+Q+++L + K+
Sbjct: 264 SDLSDMLDQL-LKKQLIQLPEFKR 271

[Close]

BLAST of ClCG03G010450 vs. NCBI nr
Match: gi|595835274|ref|XP_007207016.1| (hypothetical protein PRUPE_ppb022887mg, partial [Prunus persica])

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 102/306 (33.33%), Postives = 153/306 (50.00%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKN----------------QIG 60
           M VM+T A   EE++A +   I  L + ++EKD +I+SL N                + G
Sbjct: 161 MQVMVTRAMSIEEQLAHMTEAITKLTKMVEEKDAQIASLINNKWEVHQDKEPSQDAHKKG 220

Query: 61  SRDVTESSQTPAMKEK---------GKTIMHEY-----------QPYTKRINNLEMSNGY 120
                ESS+   +              TI  +Y           +PYT+RI+NL M  GY
Sbjct: 221 PHHEAESSEKGLVGSLSVQQLQDMIADTIRVQYGAPSRDTLMYSKPYTRRIDNLRMPTGY 280

Query: 121 QPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLLVSQAGLLYILQGIKPRTFEELATWA 180
           QPPKFQQF+GK NPKQH+AHF+ETC+N+GT               +GIKPR FEELAT A
Sbjct: 281 QPPKFQQFDGKGNPKQHVAHFVETCNNSGT---------------EGIKPRMFEELATRA 340

Query: 181 YDMDLSTVNRGNKDLLATDIKKEN--KEVNDQVRVSSLNKSIVHGSGWVPIPGDTTEYNP 240
           +DM+LS  + G K  L  + +KE    +  D++      +++   +  VP+   T +   
Sbjct: 341 HDMELSIASHGGKHELVMEQRKEKVFGQKTDKLVKKPTKEAMTINT--VPVKISTRDK-- 400

Query: 241 LHDCYKCCKGKEKEMQRRQEEDERCRPMLKERHKICPFLDSDIASSRKVLVLKEQIMKLA 269
                   K + K M+  +E D R R + +   K  PF +SD+A   + L L+++++KL 
Sbjct: 401 --------KKEVKRMEPSREVDRRRRTLKELEEKTYPFPNSDVAGMLEDL-LEKKVIKLP 438

[Close]

BLAST of ClCG03G010450 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 134.4 bits (337), Expect = 3.2e-28
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMK-- 60
           +SVMM D   +E  MAE+E+KI+ L++ ++E+D EI++LK+Q+ + +  ESSQT  +K  
Sbjct: 53  VSVMMIDVT-AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTT 112

Query: 61  EKGKTI--------MHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCH 120
           +KGK +            +PYTKRI+NL M  GYQPPKFQQF+GK NPKQHIAHF+ETC 
Sbjct: 113 DKGKNVYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCE 172

Query: 121 NAGTREDLLVSQAGLLYILQGIKPRTFEELATWAYDMD 149
           NAG+R D LV Q      ++ +K   FE    W  D++
Sbjct: 173 NAGSRGDQLVRQ-----FVRSLKGNAFE----WYTDLE 200

[Close]

BLAST of ClCG03G010450 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-14
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1


Query: 125 LLYILQGIKPRTFEELATWAYDMDLSTVNRGNKDLLATDIKKENKEVNDQVRVSS--LNK 184
           LLYILQGIKPRTFEELAT A+DM+ S  NRG KD L    + +  E+ND  ++++  LN+
Sbjct: 276 LLYILQGIKPRTFEELATRAHDMESSIANRGAKDFLVQRTRSDKNEINDTEKIANNVLNE 335

Query: 185 SIVHGSGWVPIPGDTTEYNPLHDCYKCCKGKEKEMQRRQEEDERCRPMLKERH-KICPFL 244
           S+V     +                   K KE + +R  + DE+  P L+ER  K+ PFL
Sbjct: 336 SMVVQETLLK---------------SFSKRKETKHERNHDGDEKRCPTLRERQKKVYPFL 395

Query: 245 DSDIASSRKVLVLKEQI 259
           DS++A+  + L+ K+ I
Sbjct: 396 DSNVANMLEQLIEKQLI 397

HSP 2 Score: 37.0 bits (84), Expect = 7.0e+01
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 1


Query: 250 KVLVLKEQIMKLAKEKKIELDLDEL 275
           K  VLKE+I+KLA+E KI+LD+DE+
Sbjct: 429 KCFVLKERILKLARENKIQLDIDEV 453

HSP 3 Score: 126.3 bits (316), Expect = 8.8e-26
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRD-VTESSQTPAMKE 60
           MSVM T     EE++AE+ R I  L + ++EKD +I+SL N++ ++D +T + +      
Sbjct: 98  MSVMTTGTTSIEEQLAEIARAIAKLTKTVEEKDMQIASLINKVETQDMITNTIKAQYGGP 157

Query: 61  KGKTIMHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLL 120
              T+M+  +PYTKRI+NL M  GYQPPKFQ F+GK NPKQH+AHF+ETC+NAGT  DLL
Sbjct: 158 SQSTLMYS-KPYTKRIDNLHMPMGYQPPKFQSFDGKDNPKQHVAHFVETCNNAGTDSDLL 217

Query: 121 VSQ 123
           V+Q
Sbjct: 218 VNQ 219

[Close]

BLAST of ClCG03G010450 vs. NCBI nr
Match: gi|147858200|emb|CAN81822.1| (hypothetical protein VITISV_020798 [Vitis vinifera])

HSP 1 Score: 32.0 bits (71), Expect = 2.3e+03
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1


Query: 250 KVLVLKEQIMKLAKEKKIELDLDEL 275
           K  +LK+ IMKL K+ +I LDLDE+
Sbjct: 413 KCFILKDLIMKLVKQGRIHLDLDEV 437

HSP 2 Score: 122.9 bits (307), Expect = 9.8e-25
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMKEK 60
           MSVMM D   +E  M E+ERKI+++++ +KE+D +I++L+ Q+   + T+SSQTP +++ 
Sbjct: 43  MSVMMVDIT-AEAAMTEMERKINLVMKVVKEQDHKITALREQMQIHETTKSSQTPQLQDM 102

Query: 61  -GKTIMHEY-----------QPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIET 120
              +I  +Y           +PYTKRIN+L M  GYQP KFQQF+ K N  QH+AHF+ET
Sbjct: 103 ITSSIRAQYGGPPQTSFMYSKPYTKRINDLRMPVGYQPLKFQQFDRKGNLNQHVAHFVET 162

Query: 121 CHNAGTREDLLVSQAGLLYILQGIKPRTFEELATWAYDMDLSTVNR 155
           C N G+R D LV Q   +  L+G   + + +L   AY + LST  R
Sbjct: 163 CKNTGSRGDQLVKQ--FVRSLKGNAFKWYIDLEPEAYSLPLSTNGR 205

[Close]

BLAST of ClCG03G010450 vs. NCBI nr
Match: gi|147842332|emb|CAN76211.1| (hypothetical protein VITISV_041626 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MSVMMTDANISEERMAEVERKIDMLLRKIKEKDQEISSLKNQIGSRDVTESSQTPAMKEK 60
           M VM TD    EE++ E+ R I  L + ++EKD +I+SL N++               E 
Sbjct: 22  MLVMATDTTSVEEQLVEMARAITKLTKTVEEKDMQIASLINKV---------------EA 81

Query: 61  GKTIMHEYQPYTKRINNLEMSNGYQPPKFQQFNGKSNPKQHIAHFIETCHNAGTREDLLV 120
             T+M+  +PYTKRI+NL M  GYQPPKFQ F+GK NPKQH+AHF+ETC+NAG   D  +
Sbjct: 82  QSTLMYS-KPYTKRIDNLRMPMGYQPPKFQSFDGKGNPKQHVAHFVETCNNAGNAFDWYI 128

Query: 121 SQA 124
             A
Sbjct: 142 DLA 128

The following BLAST results are available for this feature:

BLAST of ClCG03G010450 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WN26_PRUPE	2.0e-29	33.33	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb022887mg PE=4 S...	[more]
E5GB67_CUCME	2.3e-28	47.47	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	3.2e-14	40.15	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5C4T7_VITVI	1.6e+03	56.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1	[more]
E5GBB0_CUCME	7.3e-19	45.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of ClCG03G010450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595835274\|ref\|XP_007207016.1\|	2.9e-29	33.33	hypothetical protein PRUPE_ppb022887mg, partial [Prunus persica]	[more]
gi\|307135838\|gb\|ADN33709.1\|	3.2e-28	47.47	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	4.5e-14	40.15	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|147858200\|emb\|CAN81822.1\|	2.3e+03	56.00	hypothetical protein VITISV_020798 [Vitis vinifera]	[more]
gi\|147842332\|emb\|CAN76211.1\|	6.5e-21	46.34	hypothetical protein VITISV_041626 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010450.1	ClCG03G010450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 8..42 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G010450	Cla009524	Watermelon (97103) v1	wcgwmB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G010450	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G010450	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G010450	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G010450	Cucurbita pepo (Zucchini)	cpewcgB012
ClCG03G010450	Cucurbita pepo (Zucchini)	cpewcgB322
ClCG03G010450	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G010450	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G010450	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G010450	Silver-seed gourd	carwcgB0519
ClCG03G010450	Silver-seed gourd	carwcgB0945
ClCG03G010450	Cucumber (Chinese Long) v3	cucwcgB041
ClCG03G010450	Watermelon (97103) v2	wcgwmbB186
ClCG03G010450	Wax gourd	wcgwgoB369
ClCG03G010450	Cucumber (Gy14) v1	cgywcgB605
ClCG03G010450	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G010450	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G010450	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G010450	Cucurbita moschata (Rifu)	cmowcgB098