ClCG03G010130 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G010130
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionArginyl-tRNA--protein transferase 1
LocationCG_Chr03 : 17244020 .. 17245160 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTATATGATTGTGATGAAATGGATCTTTGGCAATGCTTATGGTAGTTTGGTTATCGTAGTAGACTTCCATGGGTGTGTCTAATGGTACTTTTAGTTTTGATAAAATTCATTGGATCCGTAATCCTGGTGTCAAGGCTCTTAATTTAACTTCACTACTACTTGACACCATTGGTTGTTTTTTGGTTCTCCATGTGACTAAGTTGCCCCCAAGCAAAAGTGCAATAACCTCTAGTTGATCGTTTATTGAAGTATAATATCTCTCCAGGTGTTCCTTTTTAAGTATCTTAGGCTTTTCAGAATTGCTTCTTATCCAAAGGGCAGTGTCAACAATCATTGGGATTTGGTTTCTTTGTAGGCAGCTTAAGGAAGAGGAAATTTGTGAAGTGCAACAGCTTCTTAGTAAAATTCAAGATATCAGAATTTCTTCATCAAGATTCATTGCTTCTTCTCCCATTGATAAGGTGTGTTTTAAAGCTCTTTGGAAATCAAAGAGCCCCAAAAGAACTAATATTTTGACTTGGATTCTGCTCTATGGTTCTCTAAATTGCTCTTCTACATTGCAACATAAGCTCCAAAGCAAATGTTTATCACCATCAATTTGCCCTCTATGTTCAGCTAATGGGAAAGATATCCAGCACCTATTATTTGACTGTTCTTTTCCAAGAAATTGTTGGAAACTATTTGAATGCTTCAATGTGAATTGGGTTCTTGGGATTTCAGCAAGGGAGAATTTACAGCAACTTTTGGTCGGTCCTCATCTTTCATCTAGAGCTCAACTTCTTTGGTCAAATGTTGTTAAAGCCTTGGTTTTTGAGCTTTGGTTTGAGCATAATCAGCATGTTTTTCATGATACATCTAAAGATTGGCCGGCTAGATGGGGATCCGGCCGTCTTTTAGCTTCTTCTTGGAGTTCGCAATCCATGTTTTTTTTTAAGATTACTCTATTCAAGACATTTGTTTGAATTGGAACGCCTTTATTTTCTCTACGTAATCAAGCATCTTTTTATGTGATTTCTTGTATTTCTTGCATCTTGAATTGAATATGATGAGGGTGCTATGGGGTGCAACCTAGTTGAGATGTCCAGGTGCACCTACTGATCCTCATTTACTTTTTTGGATATTTTGTTTCTTTGTGA

mRNA sequence

ATGTTTTATATGATTGTGATGAAATGGATCTTTGGCAATGCTTATGGTAGTTTGGTTATCGTAGTAGACTTCCATGGGCAGCTTAAGGAAGAGGAAATTTGTGAAGTGCAACAGCTTCTTAGTAAAATTCAAGATATCAGAATTTCTTCATCAAGATTCATTGCTTCTTCTCCCATTGATAAGGTGTGTTTTAAAGCTCTTTGGAAATCAAAGAGCCCCAAAAGAACTAATATTTTGACTTGGATTCTGCTCTATGGTTCTCTAAATTGCTCTTCTACATTGCAACATAAGCTCCAAAGCAAATGTTTATCACCATCAATTTGCCCTCTATGTTCAGCTAATGGGAAAGATATCCAGCACCTATTATTTGACTGTTCTTTTCCAAGAAATTGTTGGAAACTATTTGAATGCTTCAATGTGAATTGGGTTCTTGGGATTTCAGCAAGGGAGAATTTACAGCAACTTTTGGTCGGTCCTCATCTTTCATCTAGAGCTCAACTTCTTTGGTCAAATGTTGTTAAAGCCTTGGTTTTTGAGCTTTGGTTTGAGCATAATCAGCATGTTTTTCATGATACATCTAAAGATTGGCCGGCTAGATGGGGATCCGGCCGTCTTTTAGCTTCTTCTTGGAATGTCCAGGTGCACCTACTGATCCTCATTTACTTTTTTGGATATTTTGTTTCTTTGTGA

Coding sequence (CDS)

ATGTTTTATATGATTGTGATGAAATGGATCTTTGGCAATGCTTATGGTAGTTTGGTTATCGTAGTAGACTTCCATGGGCAGCTTAAGGAAGAGGAAATTTGTGAAGTGCAACAGCTTCTTAGTAAAATTCAAGATATCAGAATTTCTTCATCAAGATTCATTGCTTCTTCTCCCATTGATAAGGTGTGTTTTAAAGCTCTTTGGAAATCAAAGAGCCCCAAAAGAACTAATATTTTGACTTGGATTCTGCTCTATGGTTCTCTAAATTGCTCTTCTACATTGCAACATAAGCTCCAAAGCAAATGTTTATCACCATCAATTTGCCCTCTATGTTCAGCTAATGGGAAAGATATCCAGCACCTATTATTTGACTGTTCTTTTCCAAGAAATTGTTGGAAACTATTTGAATGCTTCAATGTGAATTGGGTTCTTGGGATTTCAGCAAGGGAGAATTTACAGCAACTTTTGGTCGGTCCTCATCTTTCATCTAGAGCTCAACTTCTTTGGTCAAATGTTGTTAAAGCCTTGGTTTTTGAGCTTTGGTTTGAGCATAATCAGCATGTTTTTCATGATACATCTAAAGATTGGCCGGCTAGATGGGGATCCGGCCGTCTTTTAGCTTCTTCTTGGAATGTCCAGGTGCACCTACTGATCCTCATTTACTTTTTTGGATATTTTGTTTCTTTGTGA

Protein sequence

MFYMIVMKWIFGNAYGSLVIVVDFHGQLKEEEICEVQQLLSKIQDIRISSSRFIASSPIDKVCFKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQHLLFDCSFPRNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFELWFEHNQHVFHDTSKDWPARWGSGRLLASSWNVQVHLLILIYFFGYFVSL
Homology
[Close]
BLAST of ClCG03G010130 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 63/214 (29.44%), Postives = 90/214 (42.06%), Query Frame = 1 

Query: 23   DFHGQLKEEEICEVQQLLSKIQDIRISSSR---------------------FIASSPIDK 82
            DF   L E EI EV  LL  + ++R+  SR                     F+ S+  D 
Sbjct: 1264 DFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEVEEQGSFSCKSFRSFLLSTTRDV 1323

Query: 83   VC-FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 142
               F ++WK+K+P +     W+   G +N    +Q +    CLSPS C LC  N ++I H
Sbjct: 1324 FPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDH 1383

Query: 143  LLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 202
            L   CS+  R  WK+     V WV+     E L   L       RA +L   +V A+ + 
Sbjct: 1384 LFIHCSYSLRLWWKMLGALGVEWVIPKGCFELLSINLRISGKGKRAGILRDCLVHAIFWN 1443

[Close]
BLAST of ClCG03G010130 vs. TrEMBL
Match: M5XV38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 63/214 (29.44%), Postives = 90/214 (42.06%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRISSSR---------------------FIASSPIDK 82
           DF   L E EI EV  LL  + ++R+  SR                     F+ S+  D 
Sbjct: 234 DFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEVEEQGSFSCKSFRSFLLSTTRDV 293

Query: 83  VC-FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 142
              F ++WK+K+P +     W+   G +N    +Q +    CLSPS C LC  N ++I H
Sbjct: 294 FPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDH 353

Query: 143 LLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 202
           L   CS+  R  WK+     V WV+     E L   L       RA +L   +V A+ + 
Sbjct: 354 LFIHCSYSLRLWWKMLGALGVEWVIPKGCFELLSINLRISGKGKRAGILRDCLVHAIFWN 413

[Close]
BLAST of ClCG03G010130 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 59/192 (30.73%), Postives = 85/192 (44.27%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRISSSR---------------------FIASSPIDK 82
           DF   L E EI EV  LL  + ++R+  SR                     F+ S+  D 
Sbjct: 720 DFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEVEEQGSFSCKSFRSFLLSTTRDV 779

Query: 83  VC-FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 142
              F ++WK+K+P +     W+   G +N    +Q +    CLSPS C LC  N ++I H
Sbjct: 780 FPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDH 839

Query: 143 LLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 192
           L   CS+  R  WK+     V WV+     E L   L       RA +L   +V A+ + 
Sbjct: 840 LFLHCSYSLRLWWKMLGALGVEWVIPKGCFELLSINLRISGKGKRAGILRDCLVHAIFWN 899

[Close]
BLAST of ClCG03G010130 vs. TrEMBL
Match: M5XTH8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020284mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 58/214 (27.10%), Postives = 91/214 (42.52%), Query Frame = 1 

Query: 24  FHGQLKEEEICEVQQLLSKIQDIRISSSR-------------FIASSPIDKVC------- 83
           F   L E EI E  +LL  ++ +R+ +SR             F   S    +        
Sbjct: 246 FRRNLNELEITEAARLLDLLEGVRVITSRLDKRRWKLDPSGLFTCHSFCSHIQNRDEGEI 305

Query: 84  ---FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 143
              +  +WK+K+P +  I  W  + G LN   TLQ +    C+SP  C LC+  G+ + H
Sbjct: 306 FSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGESVDH 365

Query: 144 LLFDCSFPRNCWK-LFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 203
           +L  C F    W+ L +  N  WV+     E             +A++LW ++++A+V+ 
Sbjct: 366 ILIHCPFSLKLWETLLKEVNSVWVIPKGCFELFSIRFDALGRGKKAKILWGSLMQAVVWN 425

[Close]
BLAST of ClCG03G010130 vs. TrEMBL
Match: M5XUF8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-16
Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 1 

Query: 24   FHGQLKEEEICEVQQLLSKIQDIRISSSR-------------FIASSPIDKV--C----- 83
            F   L E EI E  +LL  ++ +R+ +SR             F   S    +  C     
Sbjct: 1225 FRRDLNELEITEAARLLDLLEGVRLITSRLDRRRWKLDPSGLFTCHSFCAHIQNCGEGEI 1284

Query: 84   ---FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 143
               +  +WK+K+P +  I  W  + G LN   TLQ +    C+SP  C LC+  G+ + H
Sbjct: 1285 FSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGESVDH 1344

Query: 144  LLFDCSFPRNCWK-LFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 192
            LL  C F    W+ L +  N  WV+     E     +       +A++LW ++++A+V+ 
Sbjct: 1345 LLLHCPFSLKLWEPLLKEVNTVWVIPEGCFELFSIRIDALGRGKKAKILWGSLMQAVVWN 1404

[Close]
BLAST of ClCG03G010130 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 62/213 (29.11%), Postives = 97/213 (45.54%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRISSSRFI-------ASSPIDKVCFKAL-------- 82
           DF   L E EI E   LL K++++R+S S+         AS       +++L        
Sbjct: 326 DFRRNLNEMEIEEAATLLQKVEEVRLSPSKMDNRRWNLEASGLFTCKSYRSLLSNNGIVH 385

Query: 83  --------WKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQ 142
                   WKSK+P++  IL W++  G+LN    +Q +    CLSP  C LC A    + 
Sbjct: 386 YYPPYSQIWKSKAPQKVKILVWLVANGNLNTCDRIQRRNPRMCLSPHWCSLCKAMEVSVN 445

Query: 143 HLLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVF 202
           H+   CS+  +  WKLF+   V+WV+     E L           +++ LW  +V A+ +
Sbjct: 446 HIFLHCSYSIQLWWKLFQEVKVSWVIPKGCFELLGTNFKALGKGKKSKALWGCLVSAIFW 505

Query: 203 ELWFEHNQHVFHD-TSKDWPARWGSGRLLASSW 211
            +W E N+ +F D T       WG  +  A+ W
Sbjct: 506 NIWLERNKRIFEDYTGVGAEVLWGRVKYWAAFW 538

[Close]
BLAST of ClCG03G010130 vs. NCBI nr
Match: gi|658036668|ref|XP_008353882.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 60/213 (28.17%), Postives = 93/213 (43.66%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRIS-------------SSRFIASSPIDKVC------ 82
           DF   L E EI EV  LL K++++R+S             S  F   S    +       
Sbjct: 152 DFRRNLNEMEIVEVATLLQKLEEVRLSPLKMDIXRXNLEASGLFSCKSYRSLLSXNGSVH 211

Query: 83  ----FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQ 142
               +  +WKSK P +  IL W++  G+LN    +Q +    CLSP  C LC A  + + 
Sbjct: 212 YFPPYPQIWKSKVPXKVKILVWLVANGNLNTCDRIQRRNPLMCLSPHXCSLCKAKEESVN 271

Query: 143 HLLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVF 202
           H+   CS+  +  WKL +    +WV+     E L           + ++LW  +V A+ +
Sbjct: 272 HIFLHCSYSIQLWWKLLQEVKASWVIPKGCFELLSTNFXALGKRKKXKVLWGCLVSAIFW 331

Query: 203 ELWFEHNQHVFHD-TSKDWPARWGSGRLLASSW 211
            +W E N+ +F D T       WG  +  A+ W
Sbjct: 332 XIWLEXNKRIFEDYTGVGAEELWGRVKYWAALW 364

[Close]
BLAST of ClCG03G010130 vs. NCBI nr
Match: gi|658018704|ref|XP_008344711.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 97.1 bits (240), Expect = 4.4e-17
Identity = 60/213 (28.17%), Postives = 95/213 (44.60%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRISSSR---------------------FIASSPIDK 82
           DF   L E EI E  +LL K++++R+S SR                     F++++   +
Sbjct: 177 DFRRNLNEXEIEEXARLLQKVEEVRLSQSRTDNRRWKLEASXLFTCKSYRSFLSNNGXMQ 236

Query: 83  VC--FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQ 142
               +  +WKSK P    IL  ++  G LN    +Q +    CLSP  C LC A  + + 
Sbjct: 237 YFPPYSQIWKSKVPPXVKILVXLVAKGKLNTCDQIQRRSHFICLSPHWCSLCKAXEEXVN 296

Query: 143 HLLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVF 202
           H+   CS+  +  WKLF+    +WV+     E L           +A+ LW  +V A+ +
Sbjct: 297 HIFXHCSYTIQLWWKLFQEVRASWVIPKGCFELLSTKFQALGXGRKAKXLWGCLVSAVFW 356

Query: 203 ELWFEHNQHVFHD-TSKDWPARWGSGRLLASSW 211
            +W E N+ +F D T       WG  +  A+ W
Sbjct: 357 NIWLERNKRIFEDYTGXGVEVLWGRVKYWAALW 389

[Close]
BLAST of ClCG03G010130 vs. NCBI nr
Match: gi|658027317|ref|XP_008349094.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 58/216 (26.85%), Postives = 90/216 (41.67%), Query Frame = 1 

Query: 22  VDFHGQLKEEEICEVQQLLSKIQDIRISSSR-------------FIASSPIDKVC----- 81
           ++F   L++ EI EV  LL K++ +R+  SR             F   S    +C     
Sbjct: 257 LEFRRNLRKSEIEEVAGLLQKVESVRLCHSREDRRRRNLEGSGQFTCKSYNSFLCNNEDV 316

Query: 82  -----FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDI 141
                F  +WK+K P +  IL W++  G +N    +Q ++   C SP  C LC +  +  
Sbjct: 317 QQFPPFSQIWKAKVPPKVKILVWLVALGKVNTCDQVQRRMPFACFSPHWCALCKSGEESA 376

Query: 142 QHLLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALV 201
            H+   C +  +  WKL +     WV      E L     G    S+A+ LW +++  L 
Sbjct: 377 NHVFLHCPYSIQLWWKLLKEVGARWVTPKGCFELLSTKFEGLGKGSKAKTLWGSLLMTLF 436

Query: 202 FELWFEHNQHVFHDTS-----------KDWPARWGS 203
           + +W E N+ VF D             K W A W S
Sbjct: 437 WNIWLERNKRVFEDYKGVGVEELWDRVKHWAALWAS 472

[Close]
BLAST of ClCG03G010130 vs. NCBI nr
Match: gi|596232261|ref|XP_007224309.1| (hypothetical protein PRUPE_ppa019854mg [Prunus persica])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 63/214 (29.44%), Postives = 90/214 (42.06%), Query Frame = 1 

Query: 23  DFHGQLKEEEICEVQQLLSKIQDIRISSSR---------------------FIASSPIDK 82
           DF   L E EI EV  LL  + ++R+  SR                     F+ S+  D 
Sbjct: 234 DFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEVEEQGSFSCKSFRSFLLSTTRDV 293

Query: 83  VC-FKALWKSKSPKRTNILTWILLYGSLNCSSTLQHKLQSKCLSPSICPLCSANGKDIQH 142
              F ++WK+K+P +     W+   G +N    +Q +    CLSPS C LC  N ++I H
Sbjct: 294 FPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDH 353

Query: 143 LLFDCSFP-RNCWKLFECFNVNWVLGISARENLQQLLVGPHLSSRAQLLWSNVVKALVFE 202
           L   CS+  R  WK+     V WV+     E L   L       RA +L   +V A+ + 
Sbjct: 354 LFIHCSYSLRLWWKMLGALGVEWVIPKGCFELLSINLRISGKGKRAGILRDCLVHAIFWN 413

The following BLAST results are available for this feature:
BLAST of ClCG03G010130 vs. TrEMBL
Match NameE-valueIdentityDescription
M5WJ76_PRUPE1.5e-1629.44Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S... [more]
M5XV38_PRUPE1.5e-1629.44Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1[more]
M5X4S0_PRUPE2.0e-1630.73Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S... [more]
M5XTH8_PRUPE4.4e-1627.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020284mg PE=4 SV=1[more]
M5XUF8_PRUPE5.8e-1628.65Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015473mg PE=4 S... [more]
BLAST of ClCG03G010130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657996200|ref|XP_008390463.1|3.0e-1829.11PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|658036668|ref|XP_008353882.1|3.4e-1728.17PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|658018704|ref|XP_008344711.1|4.4e-1728.17PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|658027317|ref|XP_008349094.1|1.7e-1626.85PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|596232261|ref|XP_007224309.1|2.2e-1629.44hypothetical protein PRUPE_ppa019854mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G010130.1ClCG03G010130.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 61..132
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G010130Cucumber (Chinese Long) v3cucwcgB041
ClCG03G010130Watermelon (97103) v2wcgwmbB186
ClCG03G010130Wax gourdwcgwgoB369
ClCG03G010130Cucumber (Gy14) v1cgywcgB605
ClCG03G010130Wild cucumber (PI 183967)cpiwcgB041
ClCG03G010130Cucumber (Chinese Long) v2cuwcgB038
ClCG03G010130Watermelon (97103) v1wcgwmB225
ClCG03G010130Bottle gourd (USVL1VR-Ls)lsiwcgB361
ClCG03G010130Cucumber (Gy14) v2cgybwcgB036