ClCG03G009350 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G009350
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr03 : 12410023 .. 12411859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACACGACGCTCACCGGAAATGCCTCTACCTCCGAACTAGTGAAGTTCAGCAACCCACCCTTGAATTAGCTCTTGAATCAACTCACGCCCTATTCTTCGAAGCTACAAGCTTAAAGGTCATCTTACTGGTAAGAACCTTTGCCCTCCTATGTTTCTTCCATCACCGGGAGATACCTCGGCGAAAAATACCAATGTCGTTGGTGCTTCGAGCTCCCAATTCGTTGCAGATGACGCGATTAGCTCGTCGGTCGAAAGAAGTCTGAATCCCCAATATGAAGCATGGATTGCTGTGGATCAATTGTTGTTGGGCTGGCTGTACAACTCTATGGCACCAGACGTGGTCGTTCAACTTATGGGATTCGAAAACGTGAAGGAGTTGTGGGAAGCAATTGAGGAACTCTTCGGGGTTCAATCGAGGGCAGAAGAAGACTATCTCAGGCAAGTTTTTCAACAAACTCGAAAAGGAAATATGAAGATGAGTGAGTACCTACGGGTGATGAAAACCCGCTCTGATAACCTAGCACAAGCTGGAAGTCCAGTAACAACCAGGGCCCTAGTTTCACAAATTCTACTAGGGCTAAATGAAGAATACAACCCCGTGGTGGTCAGAATACAAGGAAAACCAATAATATCATGGCTAGATATGCAATTGAAACTTCTCTCATATGAAAAGCGTCTCGAGCATCTGAATTCTGTTAAAACTAAGAGTAATTTCACTCAAACACCCTCAATCAATGTTGTAATTAATCGGAATTCAAACGGTTCAAAGCCACATAATAACCAAAAACAACAATAAAGTAATGGTCAAAGAGGTAGTGGCGCCAATCCTTTCTTCAACAACAACAACAATGCTAATCAAGGGCGTGGAAGAGGACGAGGAGAAAGCAATAACAGACCAATGTGTGGCAAATTTGGTCATACTACATTAATCTGTTATCATATATTTGATAAGGAATACAATCAAAACTCCAACCAAGGTAGAGGCAACGGTGGTACACCAGGGAATAACATTGGCAATCCAACAATCTTTGCTACTCAAACATCCAATCCTTTTGTAGCCAACGCTAGAGACAGTCAGGGATCCAAGTTGGTATGCTGACAACGAAGCTACTAACAATGTCACATCGGATTTCAACAATATAACTCATCCCACCGAGTATGGAGGTAGTGAACTAGTAATAGTCGGTAATGGTGAAAAACTTTAAATATCCTACATTGGGAACTCATGTTTATCTAATGAGAAAAATAGCCTAATGCTTAAAAATATCATGTGTGTACCATCATTGCAAAAAATTTAATTAGTGTATCAAAATTGGCACAAGACAATGTTGTGTGTGTTGAATTTGATAGTGATTATTATCTTATAAAGGACAAAGCTACGGGATGCACACTGCTGAAAGGGGAACTCAGTGATGGGCTTTATTGGTTGTGGTTGAATGGAGTAAGAGTCCTGAAGGGAGGAATAAGTGAAGATAGTTCAACTCAACACATAAATAAGGGTTCAACTGCATTCATTCTATCGAGAACCAGAGTTAATGTAGCAGAATCACGAGTGTTATGGCACAAACGGTTGGGTGATCCATCACTGAAAACTTTAGAGTTAATCATTAGAGAATGTAATATTCCGACTAAGATGAATGAACAACTTGAATTTTGTGAATCTTTTCAATTAGGCAAAGCACATACTCTACCTTTTCCCAACTCTGTCGCACAAGCGTCTGAAAATTTTGATCTAGTTCATACTGACGTGTGGGGACTTGCACCGATAACATCTACAAATGGATATAGGTACTATGTCTCATTTTTGGATGATTACAGCAGATATCTTTAG

mRNA sequence

ATGGCAAACACGACGCTCACCGGAAATGCCTCTACCTCCGAACTAGTGAACTACAAGCTTAAAGGTCATCTTACTGGTAAGAACCTTTGCCCTCCTATGTTTCTTCCATCACCGGGAGATACCTCGGCGAAAAATACCAATGTCGTTGGTGCTTCGAGCTCCCAATTCGTTGCAGATGACGCGATTAGCTCGTCGGTCGAAAGAAGTCTGAATCCCCAATATGAAGCATGGATTGCTGTGGATCAATTGTTGTTGGGCTGGCTGTACAACTCTATGGCACCAGACGTGGTCGTTCAACTTATGGGATTCGAAAACGTGAAGGAGTTGTGGGAAGCAATTGAGGAACTCTTCGGGGTTCAATCGAGGGCAGAAGAAGACTATCTCAGGCAAGTTTTTCAACAAACTCGAAAAGGAAATATGAAGATGAGTGAGTACCTACGGGTGATGAAAACCCGCTCTGATAACCTAGCACAAGCTGGAAGTCCAGTAACAACCAGGGCCCTAGTTTCACAAATTCTACTAGGGCTAAATGAAGAATACAACCCCGTGGTGGTCAGAATACAAGGAAAACCAATAATATCATGGCTAGATATGCAATTGAAACTTCTCTCATATGAAAAGCGTCTCGAGCATCTGAATTCTGTTAAAACTAAGAGTAGTGGCGCCAATCCTTTCTTCAACAACAACAACAATGCTAATCAAGGGCGTGGAAGAGGACGAGGAGAAAGCAATAACAGACCAATGTGTGGCAAATTTGGTCATACTACATTAATCTGTTATCATATATTTGATAAGGAATACAATCAAAACTCCAACCAAGAGACAGTCAGGGATCCAAGTTGGTATGCTGACAACGAAGCTACTAACAATGTCACATCGGATTTCAACAATATAACTCATCCCACCGAGTATGGAGGTAGTGAACTAGTAATAGTCGGTAATGACAATGTTGTGTGTGTTGAATTTGATAGTGATTATTATCTTATAAAGGACAAAGCTACGGGATGCACACTGCTGAAAGGGGAACTCAGTGATGGGCTTTATTGGTTGTGGTTGAATGGAGTAAGAGTCCTGAAGGGAGGAATAAGTGAAGATAGTTCAACTCAACACATAAATAAGGGTTCAACTGCATTCATTCTATCGAGAACCAGAGTTAATGTAGCAGAATCACGAGTGTTATGGCACAAACGGTTGGGTGATCCATCACTGAAAACTTTAGAGTTAATCATTAGAGAATGTAATATTCCGACTAAGATGAATGAACAACTTGAATTTTGTGAATCTTTTCAATTAGGCAAAGCACATACTCTACCTTTTCCCAACTCTGTCGCACAAGCGTCTGAAAATTTTGATCTAGTTCATACTGACGTGTGGGGACTTGCACCGATAACATCTACAAATGGATATAGGTACTATGTCTCATTTTTGGATGATTACAGCAGATATCTTTAG

Coding sequence (CDS)

ATGGCAAACACGACGCTCACCGGAAATGCCTCTACCTCCGAACTAGTGAACTACAAGCTTAAAGGTCATCTTACTGGTAAGAACCTTTGCCCTCCTATGTTTCTTCCATCACCGGGAGATACCTCGGCGAAAAATACCAATGTCGTTGGTGCTTCGAGCTCCCAATTCGTTGCAGATGACGCGATTAGCTCGTCGGTCGAAAGAAGTCTGAATCCCCAATATGAAGCATGGATTGCTGTGGATCAATTGTTGTTGGGCTGGCTGTACAACTCTATGGCACCAGACGTGGTCGTTCAACTTATGGGATTCGAAAACGTGAAGGAGTTGTGGGAAGCAATTGAGGAACTCTTCGGGGTTCAATCGAGGGCAGAAGAAGACTATCTCAGGCAAGTTTTTCAACAAACTCGAAAAGGAAATATGAAGATGAGTGAGTACCTACGGGTGATGAAAACCCGCTCTGATAACCTAGCACAAGCTGGAAGTCCAGTAACAACCAGGGCCCTAGTTTCACAAATTCTACTAGGGCTAAATGAAGAATACAACCCCGTGGTGGTCAGAATACAAGGAAAACCAATAATATCATGGCTAGATATGCAATTGAAACTTCTCTCATATGAAAAGCGTCTCGAGCATCTGAATTCTGTTAAAACTAAGAGTAGTGGCGCCAATCCTTTCTTCAACAACAACAACAATGCTAATCAAGGGCGTGGAAGAGGACGAGGAGAAAGCAATAACAGACCAATGTGTGGCAAATTTGGTCATACTACATTAATCTGTTATCATATATTTGATAAGGAATACAATCAAAACTCCAACCAAGAGACAGTCAGGGATCCAAGTTGGTATGCTGACAACGAAGCTACTAACAATGTCACATCGGATTTCAACAATATAACTCATCCCACCGAGTATGGAGGTAGTGAACTAGTAATAGTCGGTAATGACAATGTTGTGTGTGTTGAATTTGATAGTGATTATTATCTTATAAAGGACAAAGCTACGGGATGCACACTGCTGAAAGGGGAACTCAGTGATGGGCTTTATTGGTTGTGGTTGAATGGAGTAAGAGTCCTGAAGGGAGGAATAAGTGAAGATAGTTCAACTCAACACATAAATAAGGGTTCAACTGCATTCATTCTATCGAGAACCAGAGTTAATGTAGCAGAATCACGAGTGTTATGGCACAAACGGTTGGGTGATCCATCACTGAAAACTTTAGAGTTAATCATTAGAGAATGTAATATTCCGACTAAGATGAATGAACAACTTGAATTTTGTGAATCTTTTCAATTAGGCAAAGCACATACTCTACCTTTTCCCAACTCTGTCGCACAAGCGTCTGAAAATTTTGATCTAGTTCATACTGACGTGTGGGGACTTGCACCGATAACATCTACAAATGGATATAGGTACTATGTCTCATTTTTGGATGATTACAGCAGATATCTTTAG

Protein sequence

MANTTLTGNASTSELVNYKLKGHLTGKNLCPPMFLPSPGDTSAKNTNVVGASSSQFVADDAISSSVERSLNPQYEAWIAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGKPIISWLDMQLKLLSYEKRLEHLNSVKTKSSGANPFFNNNNNANQGRGRGRGESNNRPMCGKFGHTTLICYHIFDKEYNQNSNQETVRDPSWYADNEATNNVTSDFNNITHPTEYGGSELVIVGNDNVVCVEFDSDYYLIKDKATGCTLLKGELSDGLYWLWLNGVRVLKGGISEDSSTQHINKGSTAFILSRTRVNVAESRVLWHKRLGDPSLKTLELIIRECNIPTKMNEQLEFCESFQLGKAHTLPFPNSVAQASENFDLVHTDVWGLAPITSTNGYRYYVSFLDDYSRYL

Homology

[Close]

BLAST of ClCG03G009350 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 162/460 (35.22%), Postives = 234/460 (50.87%), Query Frame = 1


Query: 92  MAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKGNMKMSEYLRVMKT 151
           M  +V  QL+  E  +++WE  + L G  +R+   +L+  F +TRKG +KM EYL  MK 
Sbjct: 1   MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60

Query: 152 RSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGKPIISWLDMQLKLLSYEKRLEH 211
            +D+LA AGS V+T  LV+Q L GL+ EYNP+VV++  K  ++W++MQ +LL+YE RLE 
Sbjct: 61  IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYENRLEQ 120

Query: 212 LNSV--------------------KTKSSGANPFFNNNNNANQGRGRGRGESNN--RPMC 271
           +N+                     K+ + G       N  A  GRGRGR   +     +C
Sbjct: 121 INNQSNLTLNPSSNISTILYNRRGKSNAFGGGRGGQINRGARGGRGRGRATKDRIVCQVC 180

Query: 272 GKFGHTTLICYHIFDKEY-NQNSNQE--------------------TVRDPSWYADNEAT 331
            K GH    CYH F+K Y  QNS+++                    TV D  WY D+ A+
Sbjct: 181 CKPGHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNFNAYVASPSTVEDLDWYFDSGAS 240

Query: 332 NNVTSDFNNITHPTEYGGSELVIVGNDN----VVCVEFDSD-----------YYLIKDKA 391
           N+VT D N +    E  G   + VGN      + C +   D            Y+ K   
Sbjct: 241 NHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDSSLDTQQKSLNLKDILYVPKITK 300

Query: 392 TGCTLLKGELSDGLYWLW----------LNGVRVLKGGISEDSSTQHINKGSTAFILSRT 451
              ++ K    + +Y  +          L G  +L+G I +      +  GST+   +  
Sbjct: 301 NLLSISKLTFDNDIYVEFHDVACFVKDKLTGRILLEGKIKD--GLYQLPGGSTS---TNK 360

Query: 452 RVNVAES-RVLWHKRLGDPSLKTLELIIRECNIPTKMNEQLEFCESFQLGKAHTLPFPNS 483
           R +V  S +  WH++LG P+ K L  +++ CNI     E  EFCE+ Q GKAH LPF NS
Sbjct: 361 RPHVFFSIKETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNS 420

[Close]

BLAST of ClCG03G009350 vs. TrEMBL
Match: A5C001_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037543 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.6e-52
Identity = 136/485 (28.04%), Postives = 220/485 (45.36%), Query Frame = 1


Query: 71  NPQYEAWIAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQ 130
           NP +  W   D+++L W+Y+S+ P+++ Q++G+++    W A+E  F   SRA    LR 
Sbjct: 143 NPDFVMWRRFDRMILSWIYSSLTPEIMGQIVGYQSSHAXWFALEXXFXASSRARVMQLRL 202

Query: 131 VFQQTRKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGK 190
            FQ TRKG++ M EY+  +K+ +DNLA  G PVT R  + Q+L GL  +YN +V  +  +
Sbjct: 203 EFQTTRKGSLTMMEYILKLKSLADNLAAIGEPVTDRDQILQLLGGLGADYNSIVASLTAR 262

Query: 191 PIISWLDMQLKLLSYE---KRLEHLNSVKTKSSGANPFFNNNNNANQGRGRGRGESNNRP 250
                   +  ++S      + +H N+ ++        FN     N GR +         
Sbjct: 263 EDEDNSVAEDNVISANLATPQYQHFNNKRSSGQNRQSGFNTRRGTNGGRSQSSQHRPQCQ 322

Query: 251 MCGKFGHTTLICYHIFD---KEYNQN-------------------SNQETVRDPSWYADN 310
           +CGKFGHT + CYH FD   + YN N                   ++  T+ D +W+ D 
Sbjct: 323 LCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKNQVQAMMASPSTISDEAWFFDT 382

Query: 311 EATNNVTSDFNNITHPTEYGGSELVIVGNDNVVCV------------------------- 370
            AT++++   + ++    Y G++ VIVGN   + +                         
Sbjct: 383 GATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQLRQVLHVPD 442

Query: 371 -------------------EFDSDYYLIKDKATGCTLLKGELSDGLYWLWLNGVRVLKGG 430
                              EF   ++ +KD+ T   LL+G L  GLY      V      
Sbjct: 443 IATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYRFPARFV------ 502

Query: 431 ISEDSSTQHINKGSTAFILS----RTRVNVAESRVLWHKRLGDPSLKTLELIIRECNIPT 483
                          AF+ S     + +++  +  LWH RLG P+   L+ I+  CNI  
Sbjct: 503 -----------PSPAAFVSSSYDRSSNLSLTTTTTLWHSRLGHPADNILKHILTSCNISH 562

[Close]

BLAST of ClCG03G009350 vs. TrEMBL
Match: A5BQ73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039158 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 146/497 (29.38%), Postives = 230/497 (46.28%), Query Frame = 1


Query: 70  LNPQYEAWIAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLR 129
           +NP + A    D+ +L W+Y+S+ P ++ Q++G  +    W A+E++F   SRA    L 
Sbjct: 78  INPAFVAXRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLX 137

Query: 130 QVFQQTRKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQ- 189
             FQ T+KG+M M +Y+  +K  +D+LA  G PV+ +  +  +L GL  +YN VV  I  
Sbjct: 138 LEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINI 197

Query: 190 GKPIISWLDMQLKLLSYEKRLEHLNSV--------------------KTKSSGANPFFNN 249
            +  IS   +   LL++E+RLE   S+                    +  + G  P F  
Sbjct: 198 REDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSANYASXSNNRGGGRKYNGGRGPNFMM 257

Query: 250 NNNANQGRGRG---------RGESNNRP---MCGKFGHTTLICYHIFDKEYNQNSNQET- 309
            N+  +GRGRG            S+ RP   +CGKFGHT  +CYH FD  +    N  T 
Sbjct: 258 TNSNFRGRGRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTG 317

Query: 310 -------------------VRDPSWYADNEATNNVTSDFNNITHPTEYGGSELVIVGNDN 369
                                D +WY D+ A++++T +  N+T+ T Y G++ V +GN  
Sbjct: 318 VSNSGNSNXMPAMVAXSNNXADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGK 377

Query: 370 VVCVE-------FDSDYYLIKDKATGCTLLKGEL-----------------SDGLYWLWL 429
            + +        F + +     K      +   L                 S+G +   L
Sbjct: 378 HLTISNTXFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNNALIEFHSNGFFLKDL 437

Query: 430 NGVRVLKGGISEDSSTQH--INKGSTAFI-----LSRTRVNVAESRVLWHKRLGDPSLKT 483
           +  RVL  G  E+   +   I+   TA++      +    N+   R LWH RLG  +   
Sbjct: 438 HTKRVLAQGKLENGLYKFPVISNKKTAYVGITNDSTFQCSNIENKRELWHHRLGHAATDI 497

[Close]

BLAST of ClCG03G009350 vs. TrEMBL
Match: Q25AL5_ORYSA (H0102C09.1 protein OS=Oryza sativa GN=H0102C09.1 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 154/543 (28.36%), Postives = 244/543 (44.94%), Query Frame = 1


Query: 19  KLKGHLTGKNLCPPMFLPSPGDTSAKNTNVVGASSSQFVADDAISSSVERSLNPQYEAWI 78
           +L+GH+ GKN  PP          A+ T  V                  ++ NP Y+ W 
Sbjct: 180 RLEGHINGKNPAPP----------AEITKTVDGKEV-------------KTSNPNYDEWF 239

Query: 79  AVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKG 138
           A DQ +LG+L++S+  + ++Q+   +   E W+ ++++F  ++RA    +R      +KG
Sbjct: 240 AADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLDDMFTSRTRARSLNVRLALTTLQKG 299

Query: 139 NMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGK-PIISWLD 198
           N  +SEY+  MKT +D +A AG P+    L++ IL GL+E+++ VV  I G+   ++  +
Sbjct: 300 NSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILNGLDEDFDSVVSTIVGRVEPVTVAE 359

Query: 199 MQLKLLSYEKRLEHLNSVKT--------------KSSGANPFFNNNNNANQGR----GRG 258
           +  +LLS+E RL    +  T              +  GANP       A +GR    GRG
Sbjct: 360 VYSQLLSFENRLAMRQAQATANMANRGGRGGGGSRGGGANP--GRGRGATRGRGAAPGRG 419

Query: 259 RGES------NNRPMCG---KFGHTTLICYHIFDKEYNQNSN------QETVRDPSWYAD 318
           RG +      +NRP+C    K GH    C+H FD+++  +            RD +WY D
Sbjct: 420 RGNNQQQRSYDNRPLCQVCYKRGHVAADCWHRFDEDFVPDDKLVAAAIHTHARDSNWYVD 479

Query: 319 NEATNNVTSDFNNIT-----------HPTEYGGSELVIVGN------------------- 378
             AT+++TS+   +T           H     G E+  +G+                   
Sbjct: 480 TGATDHITSELEKLTARDVYKGHDQIHTASGSGMEIKHIGHSIVHTPTRPLHLNNVLHVP 539

Query: 379 --------------DNVVCVEFDSDYYLIKDKATGCTLLKGELSDGLYWLWLNGVRVLKG 438
                         DN V +E  S ++LIKD+AT  T+LKG    GLY +          
Sbjct: 540 QANKNLISAHKLAADNSVFLEIHSKHFLIKDQATRRTVLKGRRQKGLYPV---------P 599

Query: 439 GISEDSSTQHINKGSTAFILSRTRVNVAESRVLWHKRLGDPSLKTLELIIRECNIPTKMN 483
             S  SS + +               V  S   WH RLG  S   +  +I +  +P    
Sbjct: 600 SASPPSSAKVV-------------CAVTPSFERWHSRLGHSSAPIISRVISKNKLPCLDE 659

[Close]

BLAST of ClCG03G009350 vs. TrEMBL
Match: V9GZT4_MAIZE (Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.0e-48
Identity = 156/547 (28.52%), Postives = 239/547 (43.69%), Query Frame = 1


Query: 24  LTGKNLCPPMFLPSPGDTSAKNTNVVGASSSQFVADDAISSSVERSLNPQYEAWIAVDQL 83
           LTG  +CPP  +    D S +   V                      NP Y  WIA DQ 
Sbjct: 49  LTGVEICPPKTI---SDASDRTVTVA---------------------NPAYGRWIARDQA 108

Query: 84  LLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKGNMKMS 143
           +LG+L +S++ +V+  ++       +W  + E++   SRA +   R     T+KG   ++
Sbjct: 109 VLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVA 168

Query: 144 EYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGK--PIISWLDMQLK 203
           EY   M+  +D L  AG P+     VS +L GL+E++NP+V  +  +  PI    D+  +
Sbjct: 169 EYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPG-DLYTQ 228

Query: 204 LLSYEKRLEHL---------NSVKTKSSGANPFFNNNNNANQGRGRGRG----------- 263
           LLSYE R+ HL         +S   +S G    +  +      RGRGRG           
Sbjct: 229 LLSYENRM-HLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSF 288

Query: 264 ------------ESNNRP---MCGKFGHTTLICYHIFDKEY---NQNSNQETVRDPS--- 323
                       ++++RP   +C + GHT L C++ FD+ Y    +++N    ++ S   
Sbjct: 289 GRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVP 348

Query: 324 WYADNEATNNVTSDFNNITHPTEYGGSELVIVGN-------------------------- 383
           WY D  AT+++T D + +T   +Y G++ +I  N                          
Sbjct: 349 WYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSV 408

Query: 384 ------------------DNVVCVEFDSDYYLIKDKATGCTLLKGELSDGLYWLWLNGVR 443
                             DN V +EF S ++LIKD+ T   LL G+  DGLY L  +   
Sbjct: 409 LHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDL 468

Query: 444 VLKGGISEDSSTQHINKGSTAFILSRTRVNVAESRVLWHKRLGDPSLKTLELIIRECNIP 483
            LK   S                   TRV +      WHKRLG PS   +  +I   N+P
Sbjct: 469 RLKHNFSS------------------TRVPLEH----WHKRLGHPSRDIVHRVISNNNLP 528

[Close]

BLAST of ClCG03G009350 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-12
Identity = 59/225 (26.22%), Postives = 98/225 (43.56%), Query Frame = 1


Query: 77  WIAVDQLLLGWLYNSMAPDVVVQLMGFE-NVKELWEAIEELFGVQSRAEEDYLRQVFQQT 136
           W   D L+  W+Y ++   ++  ++      ++LW ++E LF     A         + T
Sbjct: 67  WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126

Query: 137 RKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGK-PIIS 196
              ++ + EY + +K+ SD L    SP++ R LV  +L GL E+Y+ ++  I+ K P  S
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186

Query: 197 WLDMQLKLLSYEKRLEHLNSVKTKSSGAN-PFFNN-----------------NNNANQGR 256
           + + +  LL  E RL   N  K+  S  N P  +N                 NNN+N GR
Sbjct: 187 FTEARSMLLMEESRLS--NKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGR 246

Query: 257 GRGRGESNNRPMCGKFGHTTLICYHIFDKEYNQNSNQETVRDPSW 282
           GR + ++         G ++       D  YN N+N    + P+W
Sbjct: 247 GRSKKKNRG-------GGSS-------DGRYNNNNNWRLNQPPTW 275

[Close]

BLAST of ClCG03G009350 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 286.6 bits (732), Expect = 8.2e-74
Identity = 172/495 (34.75%), Postives = 248/495 (50.10%), Query Frame = 1


Query: 19  KLKGHLTGKNLCPPMFLPSPGDTSAKNTNVVGASSSQFVADDAISSSVERSLNPQYEAWI 78
           KL G++ G   CP  F+ S  DT+ KN                         NP YE WI
Sbjct: 45  KLDGYIIGTKECPEQFI-STNDTTKKN-------------------------NPDYEEWI 104

Query: 79  AVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKG 138
           A DQ LLGWL NS+A D+  QL+  E  KELW   + L G  +++   YL+  F  TRKG
Sbjct: 105 AHDQALLGWLRNSVAIDIATQLLHCETSKELWNEAQSLTGAHTKSRTIYLKSEFHNTRKG 164

Query: 139 NMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGKPIISWLDM 198
            MKM +YL  MK  SD L  AGSP+++  L+ Q L GL+ +YNPVVV++  +  ++W+D+
Sbjct: 165 QMKMDQYLLKMKNLSDKLKLAGSPISSSDLIIQTLNGLDADYNPVVVKLSDQINLNWVDL 224

Query: 199 QLKLLSYEKRLEHLNSVKTKSSGAN------PFFNNNNNANQGRGR------GRGESNNR 258
           Q +LL++E R+E LN+    S  A+        F +N +  +G  R      GRG   ++
Sbjct: 225 QAQLLAFENRMEQLNNFSNLSMNASANLASQTHFRSNKSGTRGNWRGSNFRGGRGRGRSK 284

Query: 259 P---MCGKFGHTTLICYHIFDKEYN------QNSNQET----------VRDPSWYADNEA 318
           P   +C K GHTT+ C++ FDK Y       +N+ QE            +D  WY D+ A
Sbjct: 285 PTCQVCNKIGHTTVQCFYRFDKSYTCSNHYAENNKQENHSAFIASPYHGQDYEWYFDSGA 344

Query: 319 TNNVTSDFNNITHPTEYGGSELVIVGNDNVVCVEFDSDYYLIKDKATGCTLLKGELSDGL 378
            N+VT     +   +E  G+                              LLKG++ DGL
Sbjct: 345 NNHVTHQNEKLQDLSESNGN-----------------------------ALLKGKVKDGL 404

Query: 379 YWLWLNGVRVLKGGISEDSSTQHINKGSTAFILSRTRVNVAESRVLWHKRLGDPSLKTLE 438
           Y L               S+   +NK S  +      ++V E+   WH++LG P+ K LE
Sbjct: 405 YQL--------------SSANSQVNKDSCIY------MSVKEN---WHRKLGHPNNKVLE 461

Query: 439 LIIRECNIPTKMNEQLEFCESFQLGKAHTLPFPNSVAQASENFDLVHTDVWGLAPITSTN 483
            +++ CN+ T  N+    CE+ Q GK H LPF +S + A E  DL+H+ VWG API S +
Sbjct: 465 KVLKNCNVKTSSNDHFLLCEACQFGKLHLLPFTSSYSHAKEPLDLIHSGVWGPAPILSPS 461

[Close]

BLAST of ClCG03G009350 vs. NCBI nr
Match: gi|828335907|ref|XP_012575528.1| (PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum])

HSP 1 Score: 251.5 bits (641), Expect = 2.9e-63
Identity = 171/497 (34.41%), Postives = 251/497 (50.50%), Query Frame = 1


Query: 18  YKLKGHLTGKNLCPPMFLPSPGDTSAKNTNVVGASSSQFVADDAISSSVERSLNPQYEAW 77
           Y+L GH+ G   CP  F+ S    S KN N                        P +E W
Sbjct: 40  YRLDGHMLGTKECPEKFIASTD--SIKNPN------------------------PAFEDW 99

Query: 78  IAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRK 137
            A D  LLGWL NSM  ++  QL+  E  K+LW+  + L G  +R+   YL+  F    K
Sbjct: 100 QAHDSQLLGWLMNSMTTEMATQLLHCETSKQLWDEAQSLAGAHTRSRVTYLKSEFHSIIK 159

Query: 138 GNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGKPIISWLD 197
           G MKM EY   MK  +D L  AGSP++   L+ Q L GL+ EYNP+VV++  +  ++W+D
Sbjct: 160 GEMKMEEYPIKMKNLADKLKLAGSPISNSDLIIQTLNGLDSEYNPMVVKLSDQTSLTWVD 219

Query: 198 MQLKLLSYEKRLEHLNSVKTKSSGA------------NPFFNNNN----NANQ------- 257
           +Q K L+++ RL+ LNS+   +  A            N F  NNN    N+N        
Sbjct: 220 LQAKFLTFDSRLDQLNSLTNLTLNASANVANKTDYRGNKFNTNNNWRGSNSNWRGSNFRG 279

Query: 258 ---GRGRGR-GESNN-RPMCGKFGHTTLICYHIFDKEYNQNS----NQETVRDPSWYADN 317
              GRGRGR G SN+      KF   T        K + +NS    + E ++  +  +  
Sbjct: 280 WRGGRGRGRIGASNHVTHQTDKFEDLT--------KHHGKNSLIVGSGEKLKIVATSSSK 339

Query: 318 EATNNVTSDFNNITHPTEYGGSELVIVGNDNVVCVEFDSDYYLIKDKATGCTLLKGELSD 377
             + N+  D   + + T+   S   +  ++N++ VEFD++   +KDK TG  +L+G L D
Sbjct: 340 LNSLNL-HDVLYVPNITKNMLSVSKLTAHNNIL-VEFDANCCFVKDKLTGKAILRGTLKD 399

Query: 378 GLYWLWLNGVRVLKGGISEDSSTQHINKGSTAFILSRTRVNVAESRVLWHKRLGDPSLKT 437
           GLY L               S T+   +   A+      V+V ES   WH+RLG P+ K 
Sbjct: 400 GLYQL---------------SRTE---RDPCAY------VSVKES---WHRRLGHPNNKV 459

Query: 438 LELIIRECNIPTKMNEQLEFCESFQLGKAHTLPFPNSVAQASENFDLVHTDVWGLAPITS 483
           L+ +++ CN+    ++   FCE+ Q GK H LPF NS + A +  +LVH DVWG AP+TS
Sbjct: 460 LDRVLKNCNVKLSPSDHFNFCEACQYGKMHFLPFKNSSSHAKKILELVHADVWGPAPVTS 473

[Close]

BLAST of ClCG03G009350 vs. NCBI nr
Match: gi|1012339207|gb|KYP50444.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 249.2 bits (635), Expect = 1.5e-62
Identity = 162/460 (35.22%), Postives = 234/460 (50.87%), Query Frame = 1


Query: 92  MAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQVFQQTRKGNMKMSEYLRVMKT 151
           M  +V  QL+  E  +++WE  + L G  +R+   +L+  F +TRKG +KM EYL  MK 
Sbjct: 1   MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60

Query: 152 RSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGKPIISWLDMQLKLLSYEKRLEH 211
            +D+LA AGS V+T  LV+Q L GL+ EYNP+VV++  K  ++W++MQ +LL+YE RLE 
Sbjct: 61  IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYENRLEQ 120

Query: 212 LNSV--------------------KTKSSGANPFFNNNNNANQGRGRGRGESNN--RPMC 271
           +N+                     K+ + G       N  A  GRGRGR   +     +C
Sbjct: 121 INNQSNLTLNPSSNISTILYNRRGKSNAFGGGRGGQINRGARGGRGRGRATKDRIVCQVC 180

Query: 272 GKFGHTTLICYHIFDKEY-NQNSNQE--------------------TVRDPSWYADNEAT 331
            K GH    CYH F+K Y  QNS+++                    TV D  WY D+ A+
Sbjct: 181 CKPGHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNFNAYVASPSTVEDLDWYFDSGAS 240

Query: 332 NNVTSDFNNITHPTEYGGSELVIVGNDN----VVCVEFDSD-----------YYLIKDKA 391
           N+VT D N +    E  G   + VGN      + C +   D            Y+ K   
Sbjct: 241 NHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDSSLDTQQKSLNLKDILYVPKITK 300

Query: 392 TGCTLLKGELSDGLYWLW----------LNGVRVLKGGISEDSSTQHINKGSTAFILSRT 451
              ++ K    + +Y  +          L G  +L+G I +      +  GST+   +  
Sbjct: 301 NLLSISKLTFDNDIYVEFHDVACFVKDKLTGRILLEGKIKD--GLYQLPGGSTS---TNK 360

Query: 452 RVNVAES-RVLWHKRLGDPSLKTLELIIRECNIPTKMNEQLEFCESFQLGKAHTLPFPNS 483
           R +V  S +  WH++LG P+ K L  +++ CNI     E  EFCE+ Q GKAH LPF NS
Sbjct: 361 RPHVFFSIKETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNS 420

[Close]

BLAST of ClCG03G009350 vs. NCBI nr
Match: gi|147816383|emb|CAN68489.1| (hypothetical protein VITISV_037543 [Vitis vinifera])

HSP 1 Score: 214.2 bits (544), Expect = 5.2e-52
Identity = 136/485 (28.04%), Postives = 220/485 (45.36%), Query Frame = 1


Query: 71  NPQYEAWIAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLRQ 130
           NP +  W   D+++L W+Y+S+ P+++ Q++G+++    W A+E  F   SRA    LR 
Sbjct: 143 NPDFVMWRRFDRMILSWIYSSLTPEIMGQIVGYQSSHAXWFALEXXFXASSRARVMQLRL 202

Query: 131 VFQQTRKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQGK 190
            FQ TRKG++ M EY+  +K+ +DNLA  G PVT R  + Q+L GL  +YN +V  +  +
Sbjct: 203 EFQTTRKGSLTMMEYILKLKSLADNLAAIGEPVTDRDQILQLLGGLGADYNSIVASLTAR 262

Query: 191 PIISWLDMQLKLLSYE---KRLEHLNSVKTKSSGANPFFNNNNNANQGRGRGRGESNNRP 250
                   +  ++S      + +H N+ ++        FN     N GR +         
Sbjct: 263 EDEDNSVAEDNVISANLATPQYQHFNNKRSSGQNRQSGFNTRRGTNGGRSQSSQHRPQCQ 322

Query: 251 MCGKFGHTTLICYHIFD---KEYNQN-------------------SNQETVRDPSWYADN 310
           +CGKFGHT + CYH FD   + YN N                   ++  T+ D +W+ D 
Sbjct: 323 LCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKNQVQAMMASPSTISDEAWFFDT 382

Query: 311 EATNNVTSDFNNITHPTEYGGSELVIVGNDNVVCV------------------------- 370
            AT++++   + ++    Y G++ VIVGN   + +                         
Sbjct: 383 GATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQLRQVLHVPD 442

Query: 371 -------------------EFDSDYYLIKDKATGCTLLKGELSDGLYWLWLNGVRVLKGG 430
                              EF   ++ +KD+ T   LL+G L  GLY      V      
Sbjct: 443 IATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYRFPARFV------ 502

Query: 431 ISEDSSTQHINKGSTAFILS----RTRVNVAESRVLWHKRLGDPSLKTLELIIRECNIPT 483
                          AF+ S     + +++  +  LWH RLG P+   L+ I+  CNI  
Sbjct: 503 -----------PSPAAFVSSSYDRSSNLSLTTTTTLWHSRLGHPADNILKHILTSCNISH 562

[Close]

BLAST of ClCG03G009350 vs. NCBI nr
Match: gi|147856699|emb|CAN81355.1| (hypothetical protein VITISV_039158 [Vitis vinifera])

HSP 1 Score: 212.6 bits (540), Expect = 1.5e-51
Identity = 146/497 (29.38%), Postives = 230/497 (46.28%), Query Frame = 1


Query: 70  LNPQYEAWIAVDQLLLGWLYNSMAPDVVVQLMGFENVKELWEAIEELFGVQSRAEEDYLR 129
           +NP + A    D+ +L W+Y+S+ P ++ Q++G  +    W A+E++F   SRA    L 
Sbjct: 78  INPAFVAXRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLX 137

Query: 130 QVFQQTRKGNMKMSEYLRVMKTRSDNLAQAGSPVTTRALVSQILLGLNEEYNPVVVRIQ- 189
             FQ T+KG+M M +Y+  +K  +D+LA  G PV+ +  +  +L GL  +YN VV  I  
Sbjct: 138 LEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINI 197

Query: 190 GKPIISWLDMQLKLLSYEKRLEHLNSV--------------------KTKSSGANPFFNN 249
            +  IS   +   LL++E+RLE   S+                    +  + G  P F  
Sbjct: 198 REDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSANYASXSNNRGGGRKYNGGRGPNFMM 257

Query: 250 NNNANQGRGRG---------RGESNNRP---MCGKFGHTTLICYHIFDKEYNQNSNQET- 309
            N+  +GRGRG            S+ RP   +CGKFGHT  +CYH FD  +    N  T 
Sbjct: 258 TNSNFRGRGRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTG 317

Query: 310 -------------------VRDPSWYADNEATNNVTSDFNNITHPTEYGGSELVIVGNDN 369
                                D +WY D+ A++++T +  N+T+ T Y G++ V +GN  
Sbjct: 318 VSNSGNSNXMPAMVAXSNNXADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGK 377

Query: 370 VVCVE-------FDSDYYLIKDKATGCTLLKGEL-----------------SDGLYWLWL 429
            + +        F + +     K      +   L                 S+G +   L
Sbjct: 378 HLTISNTXFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNNALIEFHSNGFFLKDL 437

Query: 430 NGVRVLKGGISEDSSTQH--INKGSTAFI-----LSRTRVNVAESRVLWHKRLGDPSLKT 483
           +  RVL  G  E+   +   I+   TA++      +    N+   R LWH RLG  +   
Sbjct: 438 HTKRVLAQGKLENGLYKFPVISNKKTAYVGITNDSTFQCSNIENKRELWHHRLGHAATDI 497

The following BLAST results are available for this feature:

BLAST of ClCG03G009350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151S6M8_CAJCA	1.0e-62	35.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5C001_VITVI	3.6e-52	28.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037543 PE=4 SV=1	[more]
A5BQ73_VITVI	1.1e-51	29.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039158 PE=4 SV=1	[more]
Q25AL5_ORYSA	1.7e-49	28.36	H0102C09.1 protein OS=Oryza sativa GN=H0102C09.1 PE=4 SV=1	[more]
V9GZT4_MAIZE	7.0e-48	28.52	Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1	[more]

BLAST of ClCG03G009350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48050.1	1.5e-12	26.22	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of ClCG03G009350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|828332633\|ref\|XP_004513130.2\|	8.2e-74	34.75	PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum]	[more]
gi\|828335907\|ref\|XP_012575528.1\|	2.9e-63	34.41	PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]	[more]
gi\|1012339207\|gb\|KYP50444.1\|	1.5e-62	35.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|147816383\|emb\|CAN68489.1\|	5.2e-52	28.04	hypothetical protein VITISV_037543 [Vitis vinifera]	[more]
gi\|147856699\|emb\|CAN81355.1\|	1.5e-51	29.38	hypothetical protein VITISV_039158 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G009350.1	ClCG03G009350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 386..434 score: 3.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..367 score: 7.2E-80coord: 18..34 score: 7.2E-80coord: 391..482 score: 7.2
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 65..367 score: 7.2E-80coord: 18..34 score: 7.2E-80coord: 391..482 score: 7.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 77..209 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G009350	Cucurbita pepo (Zucchini)	cpewcgB170
ClCG03G009350	Cucurbita pepo (Zucchini)	cpewcgB379
ClCG03G009350	Bottle gourd (USVL1VR-Ls)	lsiwcgB015
ClCG03G009350	Cucumber (Gy14) v2	cgybwcgB349
ClCG03G009350	Melon (DHL92) v3.6.1	medwcgB021
ClCG03G009350	Silver-seed gourd	carwcgB0512
ClCG03G009350	Silver-seed gourd	carwcgB0802
ClCG03G009350	Cucumber (Chinese Long) v3	cucwcgB405
ClCG03G009350	Watermelon (97103) v2	wcgwmbB186
ClCG03G009350	Wax gourd	wcgwgoB326
ClCG03G009350	Cucumber (Gy14) v1	cgywcgB435
ClCG03G009350	Cucurbita maxima (Rimu)	cmawcgB261
ClCG03G009350	Cucurbita maxima (Rimu)	cmawcgB645
ClCG03G009350	Cucurbita moschata (Rifu)	cmowcgB250
ClCG03G009350	Cucurbita moschata (Rifu)	cmowcgB647
ClCG03G009350	Wild cucumber (PI 183967)	cpiwcgB401
ClCG03G009350	Cucumber (Chinese Long) v2	cuwcgB383
ClCG03G009350	Melon (DHL92) v3.5.1	mewcgB023
ClCG03G009350	Watermelon (97103) v1	wcgwmB227
ClCG03G009350	Watermelon (97103) v1	wcgwmB229