ClCG03G009310 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G009310
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr03 : 12251567 .. 12252698 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCACACTTGCGCGTCGCCGCCCCTTCGATTAGATGAGGGAGTGGGTAATCACACGAATAAAGACTTAATTTTTACTACTTTTTTATTTAAAATTTTACTGTTTTTATTAAAACTTTTATACTAAATTCAAATCCACATTTATTGGATCAATTGATTTGTGCCCCCTGTTGATCCGTTGAAATTCTTTCGTTGCCCTAGTCACCACTCCTTTTTTTTCTCTTCAAATATAATGAGCAGATACAGAAAGAGATATAATTATTTTCTTTTTCCAAATTTTCTTCCTCAATTTTCTTTTACATATTTCTAAGCATAAATTTTCAACAATTTCATTCATTCCTCCGGCGAGTGCACGCTTGAGTTGAGAAGTTGTGTTAAAACCTTTAGGGAGTAACCAGCATTCGCAATTTAGCAGCGCATGGTCGCACTGATTTTTGCTTTCAAGATAGTGGTTCTTCAATAGCATAACAACGTCCAACATTTGATTACAACAATTTGAAAGCAAAAAAATTTCTTCTCGTCTTTCCAAATCGATCAGAAATGATAAGGTCCTTCCAGATCTGTCAAAATTGGAGCCACTAAACAAATAAACTACCAGTGTTGGTCTCAAAAGCTCTTGATTTTCTTCGAGCAATTGGAGATTGACTATGTCCTCACCTCCACCAAATTTGATAAAGGTAAGGATGTCGTGTTTATCAATTCGAAAAGTTCCAAGGTTTCAAATTCGAACAGATGCAAGACTACAGATTCGACAGAAGCTAGTCAATCCAAGTCTCATCCTATCTCTGATTCAGACAAGTATGAGAATGACAACAAAAAAATTCATTGGCATCTTCTCAACCATATGAATCATTCATTATTCGATCTGTTCGTGGTGCAAAATCAACAAAGACAATTAATAGCACAAAAAACGTGTTATCTTATTCTTCTTAATTCAGGGTTGTCCTTAGGTTTTATATGTTTATTTCATGATTTTACAGATATCAAACACTTGTGAGGTAGTACCAGGCGATAAAGCTGAAATAGAGCTGAAACGGATCAAAACGAAGCTCAATTACATAAATCGGGAAAGAGAGAGGCAAACTGATCAAATTGCCCTTGAAGCCGCGGAGCATTTTCCTGAAAGCTGA

mRNA sequence

ATGGCCCACACTTGCGCGTCGCCGCCCCTTCGATTAGATGAGGGAGGAGTAACCAGCATTCGCAATTTAGCAGCGCATGGTCGCACTGATTTTTGCTTTCAAGATAGTGGTCCTTCCAGATCTGTCAAAATTGGAGCCACTAAACAAATAAACTACCAGTGTTGGTCTCAAAAGCTCTTGATTTTCTTCGAGCAATTGGAGATTGACTATGTCCTCACCTCCACCAAATTTGATAAAGGTAAGGATGTCGTGTTTATCAATTCGAAAAGTTCCAAGGTTTCAAATTCGAACAGATGCAAGACTACAGATTCGACAGAAGCTAGTCAATCCAAGTCTCATCCTATCTCTGATTCAGACAAGTATGAGAATGACAACAAAAAAATTCATTGGCATCTTCTCAACCATATGAATCATTCATTATTCGATCTGTTCGTGATATCAAACACTTGTGAGGTAGTACCAGGCGATAAAGCTGAAATAGAGCTGAAACGGATCAAAACGAAGCTCAATTACATAAATCGGGAAAGAGAGAGGCAAACTGATCAAATTGCCCTTGAAGCCGCGGAGCATTTTCCTGAAAGCTGA

Coding sequence (CDS)

ATGGCCCACACTTGCGCGTCGCCGCCCCTTCGATTAGATGAGGGAGGAGTAACCAGCATTCGCAATTTAGCAGCGCATGGTCGCACTGATTTTTGCTTTCAAGATAGTGGTCCTTCCAGATCTGTCAAAATTGGAGCCACTAAACAAATAAACTACCAGTGTTGGTCTCAAAAGCTCTTGATTTTCTTCGAGCAATTGGAGATTGACTATGTCCTCACCTCCACCAAATTTGATAAAGGTAAGGATGTCGTGTTTATCAATTCGAAAAGTTCCAAGGTTTCAAATTCGAACAGATGCAAGACTACAGATTCGACAGAAGCTAGTCAATCCAAGTCTCATCCTATCTCTGATTCAGACAAGTATGAGAATGACAACAAAAAAATTCATTGGCATCTTCTCAACCATATGAATCATTCATTATTCGATCTGTTCGTGATATCAAACACTTGTGAGGTAGTACCAGGCGATAAAGCTGAAATAGAGCTGAAACGGATCAAAACGAAGCTCAATTACATAAATCGGGAAAGAGAGAGGCAAACTGATCAAATTGCCCTTGAAGCCGCGGAGCATTTTCCTGAAAGCTGA

Protein sequence

MAHTCASPPLRLDEGGVTSIRNLAAHGRTDFCFQDSGPSRSVKIGATKQINYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQSKSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCEVVPGDKAEIELKRIKTKLNYINRERERQTDQIALEAAEHFPES
Homology
[Close]
BLAST of ClCG03G009310 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 51  NYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQS 110
           NY+ WSQKLLIFF+QLE+DYVLT+   D         + +S    S+    T      Q 
Sbjct: 23  NYRRWSQKLLIFFKQLEVDYVLTT---DLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQV 82

Query: 111 KSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCE 152
           K   + D +KY  DNK +  HLLNHM+  +FDLFV+  + +
Sbjct: 83  KKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]
BLAST of ClCG03G009310 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 51  NYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQS 110
           NY+ WSQKLLIFFEQLE+DYVLT+       D     S SS   +S    TT +    Q 
Sbjct: 23  NYRRWSQKLLIFFEQLEVDYVLTTDL--PSSDPPTTTSTSSNPESSTGPLTTVAV-TDQV 82

Query: 111 KSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCE 152
           K   + D +KY  DNK +  HLLNHM+  +FDLFV+  + +
Sbjct: 83  KKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]
BLAST of ClCG03G009310 vs. NCBI nr
Match: gi|659090008|ref|XP_008445782.1| (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 1 

Query: 43  KIGATKQINYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTT 102
           K+    + NY+ WSQKLLIFFEQLE+DYVLT T           ++ S   S++      
Sbjct: 15  KLEPLDETNYRRWSQKLLIFFEQLEVDYVLT-TDLPTSDPPTTTSTSSDPESSTGPLTAV 74

Query: 103 DSTEASQSKSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCE 152
             TE  Q K   + D +KY  DNK +  HLLNHM+  +FDLFV+  + +
Sbjct: 75  AVTE--QVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]
BLAST of ClCG03G009310 vs. NCBI nr
Match: gi|697157804|ref|XP_009587658.1| (PREDICTED: uncharacterized protein LOC104085354 [Nicotiana tomentosiformis])

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 

Query: 51  NYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQS 110
           NY+CWSQKLL+FFEQLE+DYVL +   +   DVV   S ++ V++S+    T   + +  
Sbjct: 22  NYKCWSQKLLVFFEQLEVDYVLFN---EPPADVV---SNTTNVADSSNITATVVADNAAK 81

Query: 111 KSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCEVVPGDKAE 160
           K        K+E DNK I  HLLNHM ++LFDLF+   +   V  D  E
Sbjct: 82  K--------KFEKDNKTIRGHLLNHMTNTLFDLFINYKSATKVIWDSLE 116

[Close]
BLAST of ClCG03G009310 vs. NCBI nr
Match: gi|659126166|ref|XP_008463045.1| (PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 8.0e-12
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1 

Query: 51  NYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQS 110
           NY+ WSQKLLIFFEQLE+DYVLT+       D     S SS   +S    TT +    Q 
Sbjct: 23  NYRRWSQKLLIFFEQLEVDYVLTTDL--PTFDPPTTTSTSSDPESSTGPLTTVAV-TDQV 82

Query: 111 KSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVISNTCEVV 154
           K   + D +KY  DNK +  HLLNHM+  +FDLF +  + + +
Sbjct: 83  KKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEI 122

[Close]
BLAST of ClCG03G009310 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1 

Query: 51  NYQCWSQKLLIFFEQLEIDYVLTSTKFDKGKDVVFINSKSSKVSNSNRCKTTDSTEASQS 110
           NY+ WSQKLLIFFEQL++DYVLT+       D     S SS   +S    TT +    Q 
Sbjct: 23  NYRRWSQKLLIFFEQLQVDYVLTTDL--PSSDPPTTTSTSSDPESSTGPPTTVAV-TDQV 82

Query: 111 KSHPISDSDKYENDNKKIHWHLLNHMNHSLFDLFVI 147
           K   + D +KY  DNK +  HLLNHM+  +F+LFV+
Sbjct: 83  KKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFNLFVV 115

The following BLAST results are available for this feature:
BLAST of ClCG03G009310 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBG5_CUCME1.2e-1141.58Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of ClCG03G009310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113205|ref|XP_008456453.1|7.2e-1345.54PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
gi|659090008|ref|XP_008445782.1|1.6e-1241.28PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo][more]
gi|697157804|ref|XP_009587658.1|3.6e-1243.12PREDICTED: uncharacterized protein LOC104085354 [Nicotiana tomentosiformis][more]
gi|659126166|ref|XP_008463045.1|8.0e-1243.69PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo][more]
gi|659102488|ref|XP_008452160.1|1.0e-1145.83PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G009310.1ClCG03G009310.1mRNA