ClCG03G006030 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G006030
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 6303872 .. 6304573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACCGAGAACACCAAGAACCTCGACCCACCTGTTGTAGATGCCGAAGCATCTTCATCTTCTCCTCAATCTTTCAACCGGCGCTTAACTCATGTGGAAGCATCCTTTGAAGAACAAAATACTCAACTTCTGGATGTGCAGTCCAAAATGGTTGGCCTTATGGATTCAATGGTTGGAATTCAACAAGTTGTAGAAATCCTCACTCAAGAAAAGGGTAAGACCACTGTTGCCACTATCCAAGGACAGAATTTCAACCCTCTGTGTATTCAATAACAAGTTAATTCGCTTCGCTGTGAGACTGAATGTGAAGTTTTACCTCATGCTCAACAAGAAAGAGTGATCCCAAGAGCACTGAGATTTCATGAAACACAACCTCAATTTGATCAAAGAAACCAAGATTGGGGTAGAGATCCATAGGGTTGGCAACGGGAGCTGCAAGATGGGTTGGGAAAATGGATCCCCACGGGTACCCATTCCCCATTTCCCCTTCTGCATGAGAGAGCGAGAGAGATAGAGTGATAGTGAGTGAGGAAAGGATGGGAGAGTGAGAGTCAATAAATAAATAAATATATATATATTCAGGTTGGGTTGGGGGATCGGGGTCGGGGTCAAGGTAGGGATACCCTCCTCGTCCCCGGATGGAGATTCGAAAAAGGTCCTCGATTTGACTCCATCTCTGGTCAAACCGAGGATTCCTAG

mRNA sequence

ATGGTGACCGAGAACACCAAGAACCTCGACCCACCTGTTGTAGATGCCGAAGCATCTTCATCTTCTCCTCAATCTTTCAACCGGCGCTTAACTCATGTGGAAGCATCCTTTGAAGAACAAAATACTCAACTTCTGGATGTGCAGTCCAAAATGGTTGGCCTTATGGATTCAATGGTTGGAATTCAACAAGTTGTAGAAATCCTCACTCAAGAAAAGGGTAAGACCACTGTTGCCACTATCCAAGGACAGAATTTCAACCCTCTGTTTTTACCTCATGCTCAACAAGAAAGAGTGATCCCAAGAGCACTGAGATTTCATGAAACACAACCTCAATTTGATCAAAGAAACCAAGATTGGGGTAGGGATACCCTCCTCGTCCCCGGATGGAGATTCGAAAAAGGTCCTCGATTTGACTCCATCTCTGGTCAAACCGAGGATTCCTAG

Coding sequence (CDS)

ATGGTGACCGAGAACACCAAGAACCTCGACCCACCTGTTGTAGATGCCGAAGCATCTTCATCTTCTCCTCAATCTTTCAACCGGCGCTTAACTCATGTGGAAGCATCCTTTGAAGAACAAAATACTCAACTTCTGGATGTGCAGTCCAAAATGGTTGGCCTTATGGATTCAATGGTTGGAATTCAACAAGTTGTAGAAATCCTCACTCAAGAAAAGGGTAAGACCACTGTTGCCACTATCCAAGGACAGAATTTCAACCCTCTGTTTTTACCTCATGCTCAACAAGAAAGAGTGATCCCAAGAGCACTGAGATTTCATGAAACACAACCTCAATTTGATCAAAGAAACCAAGATTGGGGTAGGGATACCCTCCTCGTCCCCGGATGGAGATTCGAAAAAGGTCCTCGATTTGACTCCATCTCTGGTCAAACCGAGGATTCCTAG

Protein sequence

MVTENTKNLDPPVVDAEASSSSPQSFNRRLTHVEASFEEQNTQLLDVQSKMVGLMDSMVGIQQVVEILTQEKGKTTVATIQGQNFNPLFLPHAQQERVIPRALRFHETQPQFDQRNQDWGRDTLLVPGWRFEKGPRFDSISGQTEDS
Homology
[Close]
BLAST of ClCG03G006030 vs. TrEMBL
Match: A0A0A0KE02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-12
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 22 SPQSFNRRLTHVEASFEEQNTQLLDVQSKMVGLMDSMVGIQQVVEILTQEKGKTTVATIQ 81
          SPQSFN RL HVE   + +  +LLDVQSKMVG++ S+  IQ+ +E+LTQ+KGK+T A +Q
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 82 GQNFNPL 89
            N NPL
Sbjct: 68 APNSNPL 74

[Close]
BLAST of ClCG03G006030 vs. NCBI nr
Match: gi|700192726|gb|KGN47930.1| (hypothetical protein Csa_6G416830 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 22 SPQSFNRRLTHVEASFEEQNTQLLDVQSKMVGLMDSMVGIQQVVEILTQEKGKTTVATIQ 81
          SPQSFN RL HVE   + +  +LLDVQSKMVG++ S+  IQ+ +E+LTQ+KGK+T A +Q
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 82 GQNFNPL 89
            N NPL
Sbjct: 68 APNSNPL 74

The following BLAST results are available for this feature:
BLAST of ClCG03G006030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE02_CUCSA7.2e-1256.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1[more]
BLAST of ClCG03G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192726|gb|KGN47930.1|1.0e-1156.72hypothetical protein Csa_6G416830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G006030.1ClCG03G006030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G006030Cucumber (Gy14) v2cgybwcgB033
ClCG03G006030Melon (DHL92) v3.6.1medwcgB144
ClCG03G006030Silver-seed gourdcarwcgB0145
ClCG03G006030Silver-seed gourdcarwcgB0293
ClCG03G006030Silver-seed gourdcarwcgB0925
ClCG03G006030Cucumber (Chinese Long) v3cucwcgB038
ClCG03G006030Watermelon (97103) v2wcgwmbB179
ClCG03G006030Watermelon (97103) v2wcgwmbB186
ClCG03G006030Wax gourdwcgwgoB347
ClCG03G006030Watermelon (Charleston Gray)wcgwcgB066
ClCG03G006030Cucumber (Gy14) v1cgywcgB203
ClCG03G006030Cucurbita maxima (Rimu)cmawcgB020
ClCG03G006030Cucurbita maxima (Rimu)cmawcgB197
ClCG03G006030Cucurbita maxima (Rimu)cmawcgB354
ClCG03G006030Cucurbita maxima (Rimu)cmawcgB583
ClCG03G006030Cucurbita maxima (Rimu)cmawcgB759
ClCG03G006030Cucurbita moschata (Rifu)cmowcgB014
ClCG03G006030Cucurbita moschata (Rifu)cmowcgB187
ClCG03G006030Cucurbita moschata (Rifu)cmowcgB350
ClCG03G006030Cucurbita moschata (Rifu)cmowcgB760
ClCG03G006030Wild cucumber (PI 183967)cpiwcgB038
ClCG03G006030Cucumber (Chinese Long) v2cuwcgB035
ClCG03G006030Melon (DHL92) v3.5.1mewcgB152
ClCG03G006030Watermelon (97103) v1wcgwmB223
ClCG03G006030Watermelon (97103) v1wcgwmB248
ClCG03G006030Cucurbita pepo (Zucchini)cpewcgB036
ClCG03G006030Cucurbita pepo (Zucchini)cpewcgB069
ClCG03G006030Cucurbita pepo (Zucchini)cpewcgB431
ClCG03G006030Cucurbita pepo (Zucchini)cpewcgB463
ClCG03G006030Cucurbita pepo (Zucchini)cpewcgB699
ClCG03G006030Bottle gourd (USVL1VR-Ls)lsiwcgB184
ClCG03G006030Bottle gourd (USVL1VR-Ls)lsiwcgB277