ClCG03G003920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G003920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 4245511 .. 4246150 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATTCAACCATTCCCCTGTAAATATTATTATCATCAACACCCTCCTCCTCTGTTTTCTTACAGCTCTGTTTTGTATTATTATTCCATTTTCCCTCCCTTCTTCCTCTCTTCTCTCTGTTCTTCTCTCATCTCTCTCTCAACCTTCGAATTACCCAATAAATTTTCCCACACCCACCTGCGTTTTCATCCTTGGCAATCTCATTGTCGTCCTTCTCGTTGGAGAATCCAAATTTTTTTCCTCAAAAACTCCGGATCGTTCTGGTACCGATGTATGTTTTTACGAAGCGAGTTTTCGAGAGACTTCGATTAGAGAAGAGGATGACAAAAGGGCTTTAGAGAGCTTTGATGAGGAAGATGAGCGGGAGATGGAATCGGATAATTCGGAGGAATTGAGTAAAAGAGCTGATGATTTTATTGCAAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTCGGGTATTGTTGTGAATTGACTACAATGAAGAAAAGATATAAAAAGAAAGGCTATAACTATAAGCCTTTTGTAATTTATTAGCTTCTTTGGCAACCATGGAAGTCGTTCCGTTGCCTTAGCATGTGATGATTTGTTCATATTATAA

mRNA sequence

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATTCAACCATTCCCCTGTAAATATTATTATCATCAACACCCTCCTCCTCTGTTTTCTTACAGCTCTGTTTTGTATTATTATTCCATTTTCCCTCCCTTCTTCCTCTCTTCTCTCTGTTCTTCTCTCATCTCTCTCTCAACCTTCGAATTACCCAATAAATTTTCCCACACCCACCTGCGTTTTCATCCTTGGCAATCTCATTGTCGTCCTTCTCGTTGGAGAATCCAAATTTTTTTCCTCAAAAACTCCGGATCGTTCTGGTACCGATGTATGTTTTTACGAAGCGAGTTTTCGAGAGACTTCGATTAGAGAAGAGGATGACAAAAGGGCTTTAGAGAGCTTTGATGAGGAAGATGAGCGGGAGATGGAATCGGATAATTCGGAGGAATTGAGTAAAAGAGCTGATGATTTTATTGCAAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTCGGCTTCTTTGGCAACCATGGAAGTCGTTCCGTTGCCTTAGCATGTGATGATTTGTTCATATTATAA

Coding sequence (CDS)

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATTCAACCATTCCCCTGTAAATATTATTATCATCAACACCCTCCTCCTCTGTTTTCTTACAGCTCTGTTTTGTATTATTATTCCATTTTCCCTCCCTTCTTCCTCTCTTCTCTCTGTTCTTCTCTCATCTCTCTCTCAACCTTCGAATTACCCAATAAATTTTCCCACACCCACCTGCGTTTTCATCCTTGGCAATCTCATTGTCGTCCTTCTCGTTGGAGAATCCAAATTTTTTTCCTCAAAAACTCCGGATCGTTCTGGTACCGATGTATGTTTTTACGAAGCGAGTTTTCGAGAGACTTCGATTAGAGAAGAGGATGACAAAAGGGCTTTAGAGAGCTTTGATGAGGAAGATGAGCGGGAGATGGAATCGGATAATTCGGAGGAATTGAGTAAAAGAGCTGATGATTTTATTGCAAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTCGGCTTCTTTGGCAACCATGGAAGTCGTTCCGTTGCCTTAGCATGTGATGATTTGTTCATATTATAA

Protein sequence

MGLTKIVTKSSIKFNHSPVNIIIINTLLLCFLTALFCIIIPFSLPSSSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRETSIREEDDKRALESFDEEDEREMESDNSEELSKRADDFIARVNMQRKVEAMMVGFFGNHGSRSVALACDDLFIL

Homology

[Close]

BLAST of ClCG03G003920 vs. TrEMBL
Match: A0A0A0LWQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051640 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-53
Identity = 121/166 (72.89%), Postives = 127/166 (76.51%), Query Frame = 1


Query: 1   MGLTKIVTKSSIKFNHSPVNIIIINTLLLC-FLTALFCIIIPFSLPSSSLLSVLLSSLSQ 60
           MGLTKI T SS K NHSPVN IIIN LLLC FLTAL  I     LPSSSL          
Sbjct: 1   MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTALLWI-----LPSSSLF--------H 60

Query: 61  PSNYPINFPTPTCVFILGNLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRETSIREED 120
           PSNYPINFPTPT VFILGNLIVVLL+GESK FSS TPD  G D+CFY+ SFRET + E D
Sbjct: 61  PSNYPINFPTPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGD 120

Query: 121 DKRALESFDEEDEREMESDNSEELSKRADDFIARVNMQRKVEAMMV 166
            KR  ESFDEEDE E+ES NSEELSKRADDFIARVNMQRK+EAMMV
Sbjct: 121 HKRTSESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMV 153

[Close]

BLAST of ClCG03G003920 vs. TrEMBL
Match: A0A118K3M5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_015491 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 1


Query: 24  INTLLLCFLTALFCIII---PFSLPSSSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLI 83
           + T+LL  ++ L C ++   P   P       ++  L  P      F T   +F++GNLI
Sbjct: 23  MGTILLYTISTLACTLLCSSPLWYPPFCATFNVVFFLFLPKICSFFF-TSKVLFVVGNLI 82

Query: 84  VVLLVGESKFFSSK-TPDRSG---TDVCF--------------YEASFRETSIREEDDKR 143
           VV LVGESKFF+SK TP  S    +DVC+               + + +  S    DD++
Sbjct: 83  VVFLVGESKFFASKSTPANSHASYSDVCYDKYKCKTQNPQVLPKKGTAKAKSFSINDDEK 142

Query: 144 ALESFDEEDEREMESDN------SEELSKRADDFIARVNMQRKVEA 163
            LE+  EE+  E+E ++      +EEL+K ADDFIAR+N QR++EA
Sbjct: 143 RLETEGEENVEEVEHEDLEVNLGAEELNKLADDFIARINRQRRLEA 187

[Close]

BLAST of ClCG03G003920 vs. TrEMBL
Match: V4TA27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032833mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-11
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 1


Query: 23  IINTLLLCFLTALFCIII---PFSLPS--SSLLSVLLSSLSQPSNYPINFPTPTCVFILG 82
           I++   +  LTAL C +    PF  P   +S+ + L  SL +     +   +P  +F +G
Sbjct: 13  IVDNFFIYSLTALTCSVFCFSPFWFPYLLASIKAFLFVSLPKVG---VVLLSPKVLFFVG 72

Query: 83  NLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRET-SIRE--------EDDKRALESFD 142
           NLI+++L+GESKFF+S++   S  DVC+ +   + T S++         E+ K+  E   
Sbjct: 73  NLIIIILIGESKFFASESSPAS--DVCYDDYVSKSTRSVKNPSTDKCLTENVKKTGEDIG 132

Query: 143 E---------EDEREMESDN------------SEELSKRADDFIARVNMQRKVEAMMV 166
           E         E+E E+ ++N            +EELSKRADDFIARVN QR++EA ++
Sbjct: 133 ENVVMRKWVDEEEAEVGAENGNNEEDDEVGFPAEELSKRADDFIARVNWQRRLEARLL 185

[Close]

BLAST of ClCG03G003920 vs. TrEMBL
Match: A9PA29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11190g PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 62/185 (33.51%), Postives = 90/185 (48.65%), Query Frame = 1


Query: 23  IINTLLLCFLTALFCIII---PFSLPS--SSLLSVLLSSLSQPSNYPINFPTPTCVFILG 82
           +++   L   T L C +    PF  PS   S+   L  SL + S+  ++   P  +FI+G
Sbjct: 20  LLDNFFLYSFTVLSCTLFCSSPFWFPSLFHSMKLFLFVSLPKLSSILLS---PKFIFIVG 79

Query: 83  NLIVVLLVGESKFFSSKTPDRSGTDVCFYE-----ASFRET--SIREEDDKRALESFDEE 142
           NLI+ +LVGESK+F+S +P  S TDV + E      S + T  S+ E+ + +  ESF E+
Sbjct: 80  NLIIFVLVGESKYFTSNSP--SATDVYYDEYIDQKKSLQTTSASVEEKKEVKMEESFKEK 139

Query: 143 DEREMESDN------------------------------SEELSKRADDFIARVNMQRKV 166
             +  ES                                +EEL KRADDFIARVN QR +
Sbjct: 140 QSKTCESGENNGGKGLCEGNLKVHKEREDLEGEEEFSLPTEELKKRADDFIARVNRQRML 199

[Close]

BLAST of ClCG03G003920 vs. TrEMBL
Match: A0A067JFA0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26422 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 26  TLLLCFLTALFCIIIPFSLPS--SSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLIVVL 85
           T+L C   +LFC   PF  PS  SS+  +L  SL + S+  ++      +FI GN+I++L
Sbjct: 29  TVLTC---SLFCSS-PFWFPSLFSSIKLLLFGSLPKISSVLLS---AKFIFIFGNIIIIL 88

Query: 86  LVGESKFFSSKTPDRSGTDVCFYEASFRETSI------------------REEDDK---- 145
           L+GESKFF+SKT   + +DV + E   R+  +                  +E   K    
Sbjct: 89  LIGESKFFASKTLP-APSDVYYNEYVNRKRGLQTSSTPQEKKEKEKEIVFKENASKTCGG 148

Query: 146 ----------------RALESFDEEDEREMESDNSEELSKRADDFIARVNMQRKVEAMMV 166
                            A E+ D ED+  + +   EEL+KRADDFIARVN QR++EA ++
Sbjct: 149 GKMEVRVWGEEKLELVNARENLDGEDDFNLPT---EELNKRADDFIARVNRQRRLEARLL 197

[Close]

BLAST of ClCG03G003920 vs. TAIR10
Match: AT5G50610.1 (AT5G50610.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 48/149 (32.21%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 24  INTLLLCFLTALFCIIIPFS---LPSSSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLI 83
           ++ L L F+  +FC+I+ FS   L  S+  S  L ++ +  NY +N   P  +FIL N+I
Sbjct: 27  LDRLSLSFIVVVFCVIVVFSPIWLQFSN--SFFLFTIPRVINYILN---PKVLFILTNVI 86

Query: 84  VVLLVGESKFFS--SKTPDRSGTDVCFYEASFRETSIREEDDKRALES------FDEEDE 143
           V++L+GES+     S  P  +      Y     E    E   +R LE         E   
Sbjct: 87  VIILIGESRISRPRSSLPASALLRSHSYGLWSNENVRVEMGYQRFLEENIDRPRLGEGKI 146

Query: 144 REMESDNSEELSKRADDFIARVNMQRKVE 162
            ++     + L++RADD IARVN QR++E
Sbjct: 147 CKLSPLEMDSLNQRADDLIARVNRQRRLE 170

[Close]

BLAST of ClCG03G003920 vs. TAIR10
Match: AT5G50710.1 (AT5G50710.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 48/149 (32.21%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 24  INTLLLCFLTALFCIIIPFS---LPSSSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLI 83
           ++ L L F+  +FC+I+ FS   L  S+  S  L ++ +  NY +N   P  +FIL N+I
Sbjct: 27  LDRLSLSFIVVVFCVIVVFSPIWLQFSN--SFFLFTIPRVINYILN---PKVLFILTNVI 86

Query: 84  VVLLVGESKFFS--SKTPDRSGTDVCFYEASFRETSIREEDDKRALES------FDEEDE 143
           V++L+GES+     S  P  +      Y     E    E   +R LE         E   
Sbjct: 87  VIILIGESRISRPRSSLPASALLRSHSYGLWSNENVRVEMGYQRFLEENIDRPRLGEGKI 146

Query: 144 REMESDNSEELSKRADDFIARVNMQRKVE 162
            ++     + L++RADD IARVN QR++E
Sbjct: 147 CKLSPLEMDSLNQRADDLIARVNRQRRLE 170

[Close]

BLAST of ClCG03G003920 vs. NCBI nr
Match: gi|659068789|ref|XP_008446247.1| (PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 123/163 (75.46%), Postives = 130/163 (79.75%), Query Frame = 1


Query: 6   IVTKSSIKFNHSPVNIIIINTLLLCFLTALFCI---IIPFSLPSSSLLSVLLSSLSQPSN 65
           I + SS K NHSPVN IIIN LLL FLTALF     IIP  LPSSSLLS+ LSSLS   N
Sbjct: 8   IDSSSSSKSNHSPVNNIIINILLLSFLTALFSTLLWIIPLLLPSSSLLSLFLSSLSHSFN 67

Query: 66  YPINFPTPTCVFILGNLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRETSIREEDDKR 125
           YPINFPTPT VFILGNLIVVLL+GESK FSS TPD  G D+CFY  SF ETS+ E D KR
Sbjct: 68  YPINFPTPTFVFILGNLIVVLLIGESKIFSSTTPDPFGFDICFYGGSFLETSVSEGDQKR 127

Query: 126 ALESFDEEDEREMESDNSEELSKRADDFIARVNMQRKVEAMMV 166
           A ESFDEEDE E+ES NSEELSKRADDFIARVNMQRK+EAMMV
Sbjct: 128 ASESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMV 170

[Close]

BLAST of ClCG03G003920 vs. NCBI nr
Match: gi|778664820|ref|XP_011660360.1| (PREDICTED: uncharacterized protein LOC105436383 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 121/166 (72.89%), Postives = 127/166 (76.51%), Query Frame = 1


Query: 1   MGLTKIVTKSSIKFNHSPVNIIIINTLLLC-FLTALFCIIIPFSLPSSSLLSVLLSSLSQ 60
           MGLTKI T SS K NHSPVN IIIN LLLC FLTAL  I     LPSSSL          
Sbjct: 1   MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTALLWI-----LPSSSLF--------H 60

Query: 61  PSNYPINFPTPTCVFILGNLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRETSIREED 120
           PSNYPINFPTPT VFILGNLIVVLL+GESK FSS TPD  G D+CFY+ SFRET + E D
Sbjct: 61  PSNYPINFPTPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGD 120

Query: 121 DKRALESFDEEDEREMESDNSEELSKRADDFIARVNMQRKVEAMMV 166
            KR  ESFDEEDE E+ES NSEELSKRADDFIARVNMQRK+EAMMV
Sbjct: 121 HKRTSESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMV 153

[Close]

BLAST of ClCG03G003920 vs. NCBI nr
Match: gi|976921478|gb|KVI06165.1| (protein of unknown function DUF4408 [Cynara cardunculus var. scolymus])

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-11
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 1


Query: 24  INTLLLCFLTALFCIII---PFSLPSSSLLSVLLSSLSQPSNYPINFPTPTCVFILGNLI 83
           + T+LL  ++ L C ++   P   P       ++  L  P      F T   +F++GNLI
Sbjct: 23  MGTILLYTISTLACTLLCSSPLWYPPFCATFNVVFFLFLPKICSFFF-TSKVLFVVGNLI 82

Query: 84  VVLLVGESKFFSSK-TPDRSG---TDVCF--------------YEASFRETSIREEDDKR 143
           VV LVGESKFF+SK TP  S    +DVC+               + + +  S    DD++
Sbjct: 83  VVFLVGESKFFASKSTPANSHASYSDVCYDKYKCKTQNPQVLPKKGTAKAKSFSINDDEK 142

Query: 144 ALESFDEEDEREMESDN------SEELSKRADDFIARVNMQRKVEA 163
            LE+  EE+  E+E ++      +EEL+K ADDFIAR+N QR++EA
Sbjct: 143 RLETEGEENVEEVEHEDLEVNLGAEELNKLADDFIARINRQRRLEA 187

[Close]

BLAST of ClCG03G003920 vs. NCBI nr
Match: gi|567888710|ref|XP_006436877.1| (hypothetical protein CICLE_v10032833mg [Citrus clementina])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 1


Query: 23  IINTLLLCFLTALFCIII---PFSLPS--SSLLSVLLSSLSQPSNYPINFPTPTCVFILG 82
           I++   +  LTAL C +    PF  P   +S+ + L  SL +     +   +P  +F +G
Sbjct: 13  IVDNFFIYSLTALTCSVFCFSPFWFPYLLASIKAFLFVSLPKVG---VVLLSPKVLFFVG 72

Query: 83  NLIVVLLVGESKFFSSKTPDRSGTDVCFYEASFRET-SIRE--------EDDKRALESFD 142
           NLI+++L+GESKFF+S++   S  DVC+ +   + T S++         E+ K+  E   
Sbjct: 73  NLIIIILIGESKFFASESSPAS--DVCYDDYVSKSTRSVKNPSTDKCLTENVKKTGEDIG 132

Query: 143 E---------EDEREMESDN------------SEELSKRADDFIARVNMQRKVEAMMV 166
           E         E+E E+ ++N            +EELSKRADDFIARVN QR++EA ++
Sbjct: 133 ENVVMRKWVDEEEAEVGAENGNNEEDDEVGFPAEELSKRADDFIARVNWQRRLEARLL 185

[Close]

BLAST of ClCG03G003920 vs. NCBI nr
Match: gi|566207019|ref|XP_002321717.2| (hypothetical protein POPTR_0015s11190g [Populus trichocarpa])

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 62/185 (33.51%), Postives = 90/185 (48.65%), Query Frame = 1


Query: 23  IINTLLLCFLTALFCIII---PFSLPS--SSLLSVLLSSLSQPSNYPINFPTPTCVFILG 82
           +++   L   T L C +    PF  PS   S+   L  SL + S+  ++   P  +FI+G
Sbjct: 20  LLDNFFLYSFTVLSCTLFCSSPFWFPSLFHSMKLFLFVSLPKLSSILLS---PKFIFIVG 79

Query: 83  NLIVVLLVGESKFFSSKTPDRSGTDVCFYE-----ASFRET--SIREEDDKRALESFDEE 142
           NLI+ +LVGESK+F+S +P  S TDV + E      S + T  S+ E+ + +  ESF E+
Sbjct: 80  NLIIFVLVGESKYFTSNSP--SATDVYYDEYIDQKKSLQTTSASVEEKKEVKMEESFKEK 139

Query: 143 DEREMESDN------------------------------SEELSKRADDFIARVNMQRKV 166
             +  ES                                +EEL KRADDFIARVN QR +
Sbjct: 140 QSKTCESGENNGGKGLCEGNLKVHKEREDLEGEEEFSLPTEELKKRADDFIARVNRQRML 199

The following BLAST results are available for this feature:

BLAST of ClCG03G003920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWQ9_CUCSA	8.2e-53	72.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051640 PE=4 SV=1	[more]
A0A118K3M5_CYNCS	4.5e-11	35.54	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_015491 PE=4 ...	[more]
V4TA27_9ROSI	7.7e-11	33.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032833mg PE=4 SV=1	[more]
A9PA29_POPTR	2.9e-10	33.51	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11190g PE=2 SV=1	[more]
A0A067JFA0_JATCU	1.6e-08	33.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26422 PE=4 SV=1	[more]

BLAST of ClCG03G003920 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50610.1	1.2e-07	32.21	unknown protein	[more]
AT5G50710.1	1.2e-07	32.21	unknown protein	[more]

BLAST of ClCG03G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068789\|ref\|XP_008446247.1\|	1.9e-55	75.46	PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo]	[more]
gi\|778664820\|ref\|XP_011660360.1\|	1.2e-52	72.89	PREDICTED: uncharacterized protein LOC105436383 [Cucumis sativus]	[more]
gi\|976921478\|gb\|KVI06165.1\|	6.5e-11	35.54	protein of unknown function DUF4408 [Cynara cardunculus var. scolymus]	[more]
gi\|567888710\|ref\|XP_006436877.1\|	1.1e-10	33.71	hypothetical protein CICLE_v10032833mg [Citrus clementina]	[more]
gi\|566207019\|ref\|XP_002321717.2\|	4.2e-10	33.51	hypothetical protein POPTR_0015s11190g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025520	DUF4408

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G003920.1	ClCG03G003920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025520	Domain of unknown function DUF4408	PFAM	PF14364	DUF4408	coord: 69..90 score: 1.
None	No IPR available	PANTHER	PTHR35762	FAMILY NOT NAMED	coord: 23..170 score: 3.4
None	No IPR available	PANTHER	PTHR35762:SF2	SUBFAMILY NOT NAMED	coord: 23..170 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G003920	Csa1G051640	Cucumber (Chinese Long) v2	cuwcgB035
ClCG03G003920	Cla97C03G055040	Watermelon (97103) v2	wcgwmbB186
ClCG03G003920	Bhi08G001243	Wax gourd	wcgwgoB342
ClCG03G003920	CSPI01G09710	Wild cucumber (PI 183967)	cpiwcgB038
ClCG03G003920	CmaCh18G003070	Cucurbita maxima (Rimu)	cmawcgB358
ClCG03G003920	CmoCh18G002290	Cucurbita moschata (Rifu)	cmowcgB350
ClCG03G003920	Lsi02G005170	Bottle gourd (USVL1VR-Ls)	lsiwcgB184
ClCG03G003920	Cp4.1LG09g09540	Cucurbita pepo (Zucchini)	cpewcgB036
ClCG03G003920	CsGy1G009750	Cucumber (Gy14) v2	cgybwcgB033
ClCG03G003920	MELO3C002374.2	Melon (DHL92) v3.6.1	medwcgB144
ClCG03G003920	Carg06807	Silver-seed gourd	carwcgB0480
ClCG03G003920	CsaV3_1G009800	Cucumber (Chinese Long) v3	cucwcgB038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G003920	Silver-seed gourd	carwcgB0356
ClCG03G003920	Silver-seed gourd	carwcgB0980
ClCG03G003920	Cucumber (Chinese Long) v3	cucwcgB056
ClCG03G003920	Watermelon (97103) v2	wcgwmbB191
ClCG03G003920	Watermelon (Charleston Gray)	wcgwcgB144
ClCG03G003920	Cucumber (Gy14) v1	cgywcgB222
ClCG03G003920	Cucumber (Gy14) v1	cgywcgB262
ClCG03G003920	Cucurbita maxima (Rimu)	cmawcgB061
ClCG03G003920	Cucurbita maxima (Rimu)	cmawcgB116
ClCG03G003920	Cucurbita maxima (Rimu)	cmawcgB196
ClCG03G003920	Cucurbita moschata (Rifu)	cmowcgB053
ClCG03G003920	Cucurbita moschata (Rifu)	cmowcgB105
ClCG03G003920	Cucurbita moschata (Rifu)	cmowcgB186
ClCG03G003920	Wild cucumber (PI 183967)	cpiwcgB053
ClCG03G003920	Cucumber (Chinese Long) v2	cuwcgB052
ClCG03G003920	Melon (DHL92) v3.5.1	mewcgB152
ClCG03G003920	Melon (DHL92) v3.5.1	mewcgB244
ClCG03G003920	Watermelon (97103) v1	wcgwmB223
ClCG03G003920	Watermelon (97103) v1	wcgwmB249
ClCG03G003920	Cucurbita pepo (Zucchini)	cpewcgB325
ClCG03G003920	Cucurbita pepo (Zucchini)	cpewcgB469
ClCG03G003920	Cucurbita pepo (Zucchini)	cpewcgB602
ClCG03G003920	Bottle gourd (USVL1VR-Ls)	lsiwcgB363
ClCG03G003920	Cucumber (Gy14) v2	cgybwcgB048
ClCG03G003920	Melon (DHL92) v3.6.1	medwcgB236