ClCG02G023070 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G023070
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 37481389 .. 37483352 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTAATTGATCCATCGTGTAAATTTGAAGAGATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGTAACTTTTATCTTGATTTTAGAGAATTATCGTTTAATTGCTCAATTTGTTGTGTCTAGTCCATAATTCGATTTCTTCTTGTTATTCTGAAGAAAAAAAAATGTGTTGAAGTGTTAGTATTAGTTTCTGATTTGTTAATTGAATTCTGGGTTTGATCTTGATTTGGTGGGGCGGGGGGGATTGGCCGCCGACTGAAGATCAAAGCAAATCTGATTAGTTGATCAGTGTGAAGGAAGATGGAAAAAAAAGGGAGCCGAACAGAAACCAAATACTAAAACTTGATTTGTTTTTCCTCTCTAATAGAACTTTTTTTAAAGAAATGGGTTCGCAGAGTACAGGGAAATCATTGAAGTTTGAGAATGAAAGCCAGTGAATAAAATAGGCCCACTAAGGAGTGTTTTCAAATTCATATGATCTGGTTGGGTACCATCTCTTTTTTGGGTTTTTGGTTTTTTAAAATTTAGCCTATTTTCCCATTTTCTTATAAAAATCAAAAGTTGTTGGCTTTAATTTTCAAAAATCAAAAATAAAAAAAACCAAATGATTACTAAACGGGACCTTGATTTTTTGTTTTTAGTTTTTAAAAGTTATTCTTGCTTTCTCACAATTTCTTAATCATAGTTTTCACATTTACTAAGTAAATATTTGAATTTTTAGCTAATTTACAAAAACAAAAACCAAGTTTTTGAAAACTATATTTTTTTTTAGTTTTTAAAATTTGGCTTTATTTTGAAAACACTCACAAAACGTAGACAACAAAACATTGGAATCAATAGATCACAGTATTATTTATAAGTGTAATTTTCCAAAACAAAACAATTACCGATGGAGACTGCAGTACACTTTCTTTTAGATGTCGTGTGAATCATGTGGAAACTGGTTAATGAGATATCATTCATAACTCTACTGGTTTGATATTCAAACTACAATAATATATATGAATGACAAAATGATATCTGATCCATACTGGGGATGAGTATGGATGCATCTGAAAGCTTGCCTTTGAAGCAAACTTTGTTCAAAGGACATTTTTATGGAACTGATTTAGTGTTAGTGCCTTTGATCTCTTGAAAAGATCAACCCTAAAGAAACTAATATGGTAACTTGTTTCCTTGCCTAGTACTGTGTAAGACCCTAGTTATGGAAATAGTAGGACTATTAGTAAAATATTAGTATGCTTGTTAGAAGGAGCATTTGAGTAAATAGCTAGTAAGTTGGTTAGGGCTTAATAGAGGTAGAAGTTGAGAGGGAGGGGTGAAGAATTTTGTGGGATTTCCTTAGTTGGGAATTTGGGAGAGTCTAGCCCTCTCGAAGGACTAGTGGTTACCTTGTTACTTGTACTTATGATATTATAGCATCTTTCCTCATATTTTCATATCTCAGTGTTCTTGAGTTTGCTTAGTTTGCTAAGTGTTCTTGAATGTGTTCTTGTTAGATTAACAATAACATTTGTTTACAATGCCTTAATAGGTATTATTGTCTCCTGGTGCCCTTGACATTGCCTATCCTTTACGTCGCGGTTTATTTCCATTGGCTGAGCATGAAACTATTCAAGCATGCTTGATCATGTAGTCGTAAGAAAGACGAAGGTTTTGAACAAGGTTGAGTGTCTAAATCTTTGATTGAATTACAATATGATGTGTTTGGAAGTTTCAATACCTAAGGCGATGAAGGATGTACGGTCGAATTACTGGAGACATACATGATGATCGTGCCGAGGGACTTCCACATCGGCTGAGTATCTTGGACCGATTTTTGTAA

mRNA sequence

GTGTTAATTGATCCATCGTGTAAATTTGAAGAGATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGATGTACGGTCGAATTACTGGAGACATACATGATGATCGTGCCGAGGGACTTCCACATCGGCTGAGTATCTTGGACCGATTTTTGTAA

Coding sequence (CDS)

ATGAGTTCGATCGGATCGTTGGTTCCCAGAGAAGTAGTTGATCGATGGCAAGGATTTTTGTTCGTCGTCGTCAGCTTCTTTTTCCTTCTGTTATTTCTCTATGCCGCCATCATTTCCAAGCTTCTTCCACCTTCCAACAACGCCTTCTTATCTGCTATTCAGAATGACCGGATGTACGGTCGAATTACTGGAGACATACATGATGATCGTGCCGAGGGACTTCCACATCGGCTGAGTATCTTGGACCGATTTTTGTAA

Protein sequence

MSSIGSLVPREVVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRMYGRITGDIHDDRAEGLPHRLSILDRFL
Homology
[Close]
BLAST of ClCG02G023070 vs. TrEMBL
Match: A0A0A0KIB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434405 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.0e-15
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MSSIGSLVPRE-VVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRMY 60
          MSSI SL+PRE  V R QG LFVVVSF FLL+FLYAA ISKLLPPSNNAFLSAIQND  Y
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWHY 60

[Close]
BLAST of ClCG02G023070 vs. TrEMBL
Match: E5GBS7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MSSIGSLVPRE-VVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRMY 60
          MSSI SL+PRE  V R QGF FVV+SF  LL+FLYAA+ISKLLPPSNNAFLSAIQND  Y
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

[Close]
BLAST of ClCG02G023070 vs. NCBI nr
Match: gi|700192918|gb|KGN48122.1| (hypothetical protein Csa_6G434405 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MSSIGSLVPRE-VVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRMY 60
          MSSI SL+PRE  V R QG LFVVVSF FLL+FLYAA ISKLLPPSNNAFLSAIQND  Y
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWHY 60

[Close]
BLAST of ClCG02G023070 vs. NCBI nr
Match: gi|307136070|gb|ADN33919.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MSSIGSLVPRE-VVDRWQGFLFVVVSFFFLLLFLYAAIISKLLPPSNNAFLSAIQNDRMY 60
          MSSI SL+PRE  V R QGF FVV+SF  LL+FLYAA+ISKLLPPSNNAFLSAIQND  Y
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

The following BLAST results are available for this feature:
BLAST of ClCG02G023070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIB0_CUCSA9.0e-1580.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434405 PE=4 SV=1[more]
E5GBS7_CUCME2.6e-1476.67Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of ClCG02G023070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192918|gb|KGN48122.1|1.3e-1480.00hypothetical protein Csa_6G434405 [Cucumis sativus][more]
gi|307136070|gb|ADN33919.1|3.7e-1476.67hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G023070.1ClCG02G023070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G023070Cla97C02G049150Watermelon (97103) v2wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G023070Silver-seed gourdcarwcgB0453
ClCG02G023070Silver-seed gourdcarwcgB0503
ClCG02G023070Silver-seed gourdcarwcgB0900
ClCG02G023070Cucumber (Chinese Long) v3cucwcgB037
ClCG02G023070Cucumber (Chinese Long) v3cucwcgB459
ClCG02G023070Watermelon (97103) v2wcgwmbB152
ClCG02G023070Wax gourdwcgwgoB283
ClCG02G023070Wax gourdwcgwgoB323
ClCG02G023070Watermelon (Charleston Gray)wcgwcgB122
ClCG02G023070Cucumber (Gy14) v1cgywcgB197
ClCG02G023070Cucurbita maxima (Rimu)cmawcgB052
ClCG02G023070Cucurbita maxima (Rimu)cmawcgB105
ClCG02G023070Cucurbita maxima (Rimu)cmawcgB489
ClCG02G023070Cucurbita maxima (Rimu)cmawcgB541
ClCG02G023070Cucurbita moschata (Rifu)cmowcgB043
ClCG02G023070Cucurbita moschata (Rifu)cmowcgB095
ClCG02G023070Cucurbita moschata (Rifu)cmowcgB490
ClCG02G023070Cucurbita moschata (Rifu)cmowcgB538
ClCG02G023070Wild cucumber (PI 183967)cpiwcgB037
ClCG02G023070Wild cucumber (PI 183967)cpiwcgB459
ClCG02G023070Cucumber (Chinese Long) v2cuwcgB034
ClCG02G023070Cucumber (Chinese Long) v2cuwcgB438
ClCG02G023070Melon (DHL92) v3.5.1mewcgB238
ClCG02G023070Melon (DHL92) v3.5.1mewcgB376
ClCG02G023070Watermelon (97103) v1wcgwmB182
ClCG02G023070Watermelon (97103) v1wcgwmB197
ClCG02G023070Cucurbita pepo (Zucchini)cpewcgB255
ClCG02G023070Cucurbita pepo (Zucchini)cpewcgB320
ClCG02G023070Cucurbita pepo (Zucchini)cpewcgB595
ClCG02G023070Cucurbita pepo (Zucchini)cpewcgB644
ClCG02G023070Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G023070Bottle gourd (USVL1VR-Ls)lsiwcgB360
ClCG02G023070Cucumber (Gy14) v2cgybwcgB403
ClCG02G023070Melon (DHL92) v3.6.1medwcgB370