ClCG02G020670 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCCATTGAAGTCTCTGGAGCAGGTTTGCGCACTCATAGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGGTACTTTCTTCTTCTTCCCATTTGATTTTGATTCAATTTTCAATATAAAACTCCATCATTTTGATTTGCTGCCAGTGGAGGATTTCCTCATCCATGACCTATACGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCCGAGAAATTGAAGCAGGTGAAAACCTTCCTTACAGTTTCCATTTCTCTTGTTTATCATTCACTGTACTCAACTTCTTTATATCTTGTATGACTGTAACAGGGGATTACCCAAATCCTTTCAATTATTGATGCTGCTGAGCGACAACCATGGATGAACGGTCTGGAGCTTTTGGAAGATGCTGGAGAAAACAAGCATGTTCTGTCCACTGGTTTTGAAGGGTATTTTCACAAACTTTTTGAGGAAAAATCACTCACCCATTTACTTAAATGGAGTTTATGCCAGGGTTGATGTTTTGCTTGGAGGTGGGCTACGCGAGGGACAATTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTAGCTAGTTGGGCTTCTTTTGGCTGTGATGAATTTTGCATTCGATGGTGATTGCTATGATCCTACTTGAACGTTATTTCCAAAGTTTAATTATTCAACCGCTGGATTTATGCGTTAGGAACTTGATTTCTATAATTGGGTTTATTTCTCTTGACCTGTTTAATGCCCCTGGTACCATATTAGTTTGTACAAGATATGTTTGAATTTTTTAATCTATGGCAAGGTTTGTCTCCGAGCTGCTTCAAATGTGGCAACGAACTACAATGCTGAGGTTTTCTACTTGGACACGGGGAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAGCCTGGAACTGCTTTAGATCGGGTAACTAAACTACATGTGGCTGTTGGAACTTTTTGTTCTTTAAGATTGGAAATAACCGATCTCCTTGAGTCAAAATTATGGTCTACATTCTAGAAAAGAGTGACAACCACTTCAACTACCCATCATTCTAGCGAAAATTGGTTACCTCTGGCCATTGTTATGTAGAATCTCATAAAATGTCGTCCCAAATTAGCAGTTTGGGGCCCTCAACTACTCAAGCAATTCGGTGTAGGAGTGCTATTAATTCAACAAATTTAGCAACTTCAGAAATACAATCTTGTATATTTTTTTTTTCCCAAACCTTAAGCAATCTCATAATATGATGTGATGGTGTATTGTTTAAACAGGAGAAGGTTTAGGGATCAAATACTTGCACATTGCATCCTATTATTTATAACCTCTTCTCATAACGATGGAGATGAACATGCAGGCTAGGTAATGATTGTTTTTGTGCAAGTATTTGGTCCCATTAAGTCTTTTCTTTTGTTTAAAAGATATAAAATTGTGTTATGAGATCGTTGAAGGCTTAGAAAAACAAATATTATACTTTCTTAATTATTTGGGTTGCTTTATTACTTACGTTGCTAAGTTGCTAGTCCAGCCAGGACAAACTGCTGGTTTGCGAACGTTCTGACATTCTATATAACCATGGCTGGAGTAAACAGTTGCCTTCATTTCCCTTTCTTGTGACTCATTCTTATATTCTCTATATTTTCATTTTCCAAGTTTGTATTTTTTGAATGCTTCAACTTCATCTGGCTCTGTCTCTTGAATCCATTTCATAGACTGAGCAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCGACATTTTCGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGGTTGGCAGGTTCACATTAACACAATGCATCTTAGGTGGTGAGTTTGACCCGGCGTGATTTTTTAAATGCCAATTAACAATCTAAAACCATATCAGATGTGCAAAAGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGTACGCATGATTGGATGTAGATCACTGTATATCCTTCATATATGCATAATTTGTTGAGCTTGATTGAAAGCGCATGTCCAATTTCTAGGTTCTTCAGACAATACAAAGGTATTGCATGTCCTTCATGAAAGGAATTCTGCGTATTACATATACAGGTGCTTAGACAAGATGTTTCTGAAGGTTTATTTATGACTGTGATAATTGTTGTTATGTACCAAGTGACTTGATCTTGGACATTTGCTTGCTTTGGTTGTCATTTCAGATTTCATTACACTTTTATGTTCAATTCTATGGTTTTAAAAAATAGTTATTAATTAAATGTTGAATTAGATGCATTAATCTGTAAGAACTTCATATGTTAGACTTCTATATACAATAAAAAGGAAGATTCATACTTGATGAGTATGTACAGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAATTTCTTACTTGAAGGTTTATCAATTACGTATATGGCTCTGTCAACAGTAAATGTTTCTTAACCCTTCTCTGATTTTAAGTAATTTGTCCTAAACTTCTGCTCTCCTTCTCTTCACTTCATTCCTTTTGTCTCTTCGTGTATAGAACTCCCCCAATTAACATTATGATATTTTTAATTTTAACTAATAAAGAATAAATTAAATACACTTTTTCTTGACTTCCAGTAACTCGTAATTGTAATGCCAAAGGTAACGAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATTCATGGTATATTCCTTTATGCACATGCATCATTGAGCACATCTGCAAAGTGTTCTGTTTACATTTTATTTAACACAAGAAGCTGCTTGTCCTCGTTTTTTAACTAGTTTATCTAAGAAAAGAAAATTTTATCTTGTTGGAATGCATTGAATCTATTATCTGACATTTCGAATGACCAAGCACGGGGCCTCGTTGCTGAGTTGAGTCGGGGTCCAGGGGAACGCATCATGGTGGAGGCAATTCCCTCAAAACCTAAATTGTATACAATTTATATGTAATCTACGATTTTGGGCCTTTGGTTTAGAGGGGTGTCTAATCTCACTGGCGCCTCATATCTATATTTTCTGATATTCTCCTCAAATAATAAAATTGTTTTCTCCCTCTACCCCTAGACATAGCTAACATACTGTTAGTGAACCACATAAATCTTTGTATCGTTCTTTACTGTTCACGCTTCCTCTGGTTGTTGATTTTGTTTATGTCATAACACATTTTTTTGGAGAACAATTTGATTGGATCATAGAAACTAGACAACTTGCTTAATTTCGTTATGCTGATTTGCCTTTTGTTTACTATCTCAGGCATCTGGTATGACTGTAAGATTCGTAATTTATGAATGAAAAGAAGGAACTCCTTGTACGTTGAACTAGAAAATGGCAACCTCAACTGGGATTCTTTAGTTCAAATGGAGCCTGGAGGTCAGTACAAAGACATGTTGCTAGCTTTTGTTGGTTGCTTTATCTGTAAAATATCTTGATGACTA ATGGCGCCATTGAAGTCTCTGGAGCAGGTTTGCGCACTCATAGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGGTACTTTCTTCTTCTTCCCATTTGATTTTGATTCAATTTTCAATATAAAACTCCATCATTTTGATTTGCTGCCAGTGGAGGATTTCCTCATCCATGACCTATACGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCCGAGAAATTGAAGCAGGGGATTACCCAAATCCTTTCAATTATTGATGCTGCTGAGCGACAACCATGGATGAACGGTCTGGAGCTTTTGGAAGATGCTGGAGAAAACAAGCATGTTCTGTCCACTGGTTTTGAAGGGGTTGATGTTTTGCTTGGAGGTGGGCTACGCGAGGGACAATTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTTTGTCTCCGAGCTGCTTCAAATGTGGCAACGAACTACAATGCTGAGGTTTTCTACTTGGACACGGGGAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAGCCTGGAACTGCTTTAGATCGGACTGAGCAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCGACATTTTCGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGATGTGCAAAAGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGTTCTTCAGACAATACAAAGGTATTGCATGTCCTTCATGAAAGGAATTCTGCGTATTACATATACAGGTGCTTAGACAAGATGTTTCTGAAGATTTCATTACACTTTTATGTTCAATTCTATGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAACGAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATTCATGGCATCTGGTATGACTGTAAGATTCGTAATTTATGAATGAAAAGAAGGAACTCCTTGTACGTTGAACTAGAAAATGGCAACCTCAACTGGGATTCTTTAGTTCAAATGGAGCCTGGAGGTCAGTACAAAGACATGTTGCTAGCTTTTGTTGGTTGCTTTATCTGTAAAATATCTTGATGACTA ATGGCGCCATTGAAGTCTCTGGAGCAGGTTTGCGCACTCATAGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGGTACTTTCTTCTTCTTCCCATTTGATTTTGATTCAATTTTCAATATAAAACTCCATCATTTTGATTTGCTGCCAGTGGAGGATTTCCTCATCCATGACCTATACGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCCGAGAAATTGAAGCAGGGGATTACCCAAATCCTTTCAATTATTGATGCTGCTGAGCGACAACCATGGATGAACGGTCTGGAGCTTTTGGAAGATGCTGGAGAAAACAAGCATGTTCTGTCCACTGGTTTTGAAGGGGTTGATGTTTTGCTTGGAGGTGGGCTACGCGAGGGACAATTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTTTGTCTCCGAGCTGCTTCAAATGTGGCAACGAACTACAATGCTGAGGTTTTCTACTTGGACACGGGGAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAGCCTGGAACTGCTTTAGATCGGACTGAGCAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCGACATTTTCGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGATGTGCAAAAGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGTTCTTCAGACAATACAAAGGTATTGCATGTCCTTCATGAAAGGAATTCTGCGTATTACATATACAGGTGCTTAGACAAGATGTTTCTGAAGATTTCATTACACTTTTATGTTCAATTCTATGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAACGAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATTCATGGCATCTGGTATGACTGTAAGATTCGTAATTTATGAATGA MAPLKSLEQVCALIDSNFQTFCASHGIFTGTFFFFPFDFDSIFNIKLHHFDLLPVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDAGENKHVLSTGFEGVDVLLGGGLREGQLTEIVGPSSSGKTQVCLRAASNVATNYNAEVFYLDTGNSFSPQRISGFVNWKPGTALDRTEQSMLQQVMSSISCHSVFDIFAMFDVLHQLEFNLRSQMCKRDRRVQLLIVDSISSLITPILGGSSSQGSSDNTKVLHVLHERNSAYYIYRCLDKMFLKISLHFYVQFYGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVCQASILKHSFMASGMTVRFVIYE
BLAST of ClCG02G020670 vs. Swiss-Prot
Match: RA51D_ARATH (DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana GN=RAD51D PE=2 SV=2) HSP 1 Score: 247.3 bits (630), Expect = 2.8e-64 Identity = 141/286 (49.30%), Postives = 184/286 (64.34%), Query Frame = 1
HSP 2 Score: 106.7 bits (265), Expect = 5.9e-22 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of ClCG02G020670 vs. Swiss-Prot
Match: RA51D_HUMAN (DNA repair protein RAD51 homolog 4 OS=Homo sapiens GN=RAD51D PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.0e-21 Identity = 88/267 (32.96%), Postives = 116/267 (43.45%), Query Frame = 1
BLAST of ClCG02G020670 vs. Swiss-Prot
Match: RA51D_BOVIN (DNA repair protein RAD51 homolog 4 OS=Bos taurus GN=RAD51D PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.9e-21 Identity = 87/265 (32.83%), Postives = 112/265 (42.26%), Query Frame = 1
BLAST of ClCG02G020670 vs. Swiss-Prot
Match: RA51D_MOUSE (DNA repair protein RAD51 homolog 4 OS=Mus musculus GN=Rad51d PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 8.5e-21 Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 1
HSP 2 Score: 45.4 bits (106), Expect = 1.6e-03 Identity = 28/68 (41.18%), Postives = 34/68 (50.00%), Query Frame = 1
BLAST of ClCG02G020670 vs. Swiss-Prot
Match: RA51D_DICDI (Probable DNA repair protein RAD51 homolog 4 OS=Dictyostelium discoideum GN=rad51d PE=3 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.3e-16 Identity = 75/262 (28.63%), Postives = 120/262 (45.80%), Query Frame = 1
BLAST of ClCG02G020670 vs. TrEMBL
Match: A0A0A0KCU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G302700 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 1.1e-112 Identity = 219/286 (76.57%), Postives = 234/286 (81.82%), Query Frame = 1
BLAST of ClCG02G020670 vs. TrEMBL
Match: A0A0A0KCU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G302700 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 6.3e-39 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
HSP 2 Score: 369.8 bits (948), Expect = 4.1e-99 Identity = 210/386 (54.40%), Postives = 254/386 (65.80%), Query Frame = 1
BLAST of ClCG02G020670 vs. TrEMBL
Match: A5ARD8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003133 PE=4 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 1.9e-96 Identity = 206/381 (54.07%), Postives = 247/381 (64.83%), Query Frame = 1
BLAST of ClCG02G020670 vs. TrEMBL
Match: B9SYN5_RICCO (DNA repair and recombination protein radB, putative OS=Ricinus communis GN=RCOM_0787740 PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 2.8e-95 Identity = 203/386 (52.59%), Postives = 244/386 (63.21%), Query Frame = 1
BLAST of ClCG02G020670 vs. TrEMBL
Match: A0A067L6U7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05648 PE=4 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 1.1e-94 Identity = 204/386 (52.85%), Postives = 248/386 (64.25%), Query Frame = 1
BLAST of ClCG02G020670 vs. TAIR10
Match: AT1G07745.1 (AT1G07745.1 homolog of RAD51 D) HSP 1 Score: 247.3 bits (630), Expect = 1.6e-65 Identity = 141/286 (49.30%), Postives = 184/286 (64.34%), Query Frame = 1
HSP 2 Score: 106.7 bits (265), Expect = 3.3e-23 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of ClCG02G020670 vs. TAIR10
Match: AT3G22880.1 (AT3G22880.1 DNA repair (Rad51) family protein) HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06 Identity = 48/182 (26.37%), Postives = 75/182 (41.21%), Query Frame = 1
BLAST of ClCG02G020670 vs. NCBI nr
Match: gi|778714514|ref|XP_011657248.1| (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis sativus]) HSP 1 Score: 414.8 bits (1065), Expect = 1.6e-112 Identity = 219/286 (76.57%), Postives = 234/286 (81.82%), Query Frame = 1
BLAST of ClCG02G020670 vs. NCBI nr
Match: gi|778714514|ref|XP_011657248.1| (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis sativus]) HSP 1 Score: 169.9 bits (429), Expect = 9.0e-39 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
HSP 2 Score: 413.3 bits (1061), Expect = 4.7e-112 Identity = 219/286 (76.57%), Postives = 231/286 (80.77%), Query Frame = 1
BLAST of ClCG02G020670 vs. NCBI nr
Match: gi|659095038|ref|XP_008448361.1| (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis melo]) HSP 1 Score: 160.2 bits (404), Expect = 7.1e-36 Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
HSP 2 Score: 400.2 bits (1027), Expect = 4.1e-108 Identity = 219/313 (69.97%), Postives = 234/313 (74.76%), Query Frame = 1
BLAST of ClCG02G020670 vs. NCBI nr
Match: gi|778714511|ref|XP_011657247.1| (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X1 [Cucumis sativus]) HSP 1 Score: 169.9 bits (429), Expect = 9.0e-39 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
HSP 2 Score: 398.7 bits (1023), Expect = 1.2e-107 Identity = 219/313 (69.97%), Postives = 231/313 (73.80%), Query Frame = 1
BLAST of ClCG02G020670 vs. NCBI nr
Match: gi|659095036|ref|XP_008448360.1| (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X1 [Cucumis melo]) HSP 1 Score: 160.2 bits (404), Expect = 7.1e-36 Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
HSP 2 Score: 396.4 bits (1017), Expect = 5.9e-107 Identity = 214/291 (73.54%), Postives = 224/291 (76.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |