ClCG02G018330 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G018330
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 32960764 .. 32963404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGGCCGGTAGTCTCAGGACCAAAGCACCAAATCTTCTTAGCAAGATCTTTGTCCCAACCAAACTCCTCTGACAAGATTTTAGACCTAACTTTAGGGTCATCCCGTGGTCCGATGCGGCCATCGTCAATAGCTTCTGCCAGTCCTTCCTCCATCGGTCGTGCTTCCATGTATAGACGATTGTGTTTGTTGGGGGATTTACTCATCACCGTGCGGCATGACCTCTCAAGGACAGTTTCACGGAAAGAGACAACAGGGTCAGATTTTATGATCTCAGCTCCACCCATGAAGTCATCTTGCAAATCCTTCAGACAGATCTCAAGATGCAGTTCTCCAGCACCGGCAACAATGTGCTCACCAGATTCCTCCATTGTACATACAACCATAGGATCTGACTTCGCCAGACGTTTAAGCCCTTCCACGAGCTTGGGAAGATCAGATGCCACCTTGCACTGAACAGCCACACGCACCACAGGCGATACAGAAAATTTCATGGCTCGAATTGGATGGGCATCAACTTCCTTCTCGTTTGTCAGAGTAGCATTCTTTGTGATGAATTGATCCAATCCAACCATGGCAACAGTGTTACCACACGGCACATCCTCCACCGTTTCTTGCTTCTTTCCCATCCAAATGACAGTTCTCTGGACACTCTTCACATACAAATCTTTCTTCTCGCCGGGAACATAGTTTGGTCCCATAATTCTAACTTTCAAACCAGTTGAAACTTTCCCAGAGAAGACACGTCCAAAGGCAAAGAACCTGCCCTTGTCTGATGCAGGAATCATCTTCGATACATAAAGCATAAGAGGTCCTTCAGGATCACAACTTCTAATGGCACTCGCATAAGCATCATCTAGTGGACCCTCGTACAAATTCTCAACACGGTACTTTTGAGCCGTGGCAGGGGATGGAAGATGAAAGATCATCATTTCCAAAAGAGCATTGCTTGCTGGGAGCCATGTTTGCATGACCCTCTTCATCAATGCTTTACTCATCAGATCCTTCTCTTCAGACTTCATCACAACTCCAAGCTTCTGCAACATGGGCCATAGCTTGTCCTTCTGATCGTTCATGCAAGTTGCAATGATCTGCTTGATGGGTTCGTAGCAGAACTGGACAAACCCACGCTTGCATGTTGGAGAGCCAGTGTTCTTGCTCGTCCACTTCTTGGTTGCAGGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCTACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGGTAAACGCCCAACCGTGCAGACCAGCAGAGAAAGCGACTGTTCCTTTCTCGGGGTACACTTGAACATCCCCAAGAAGTGGATCCTCGTATGTGGCCATAATCACATTGGCATTCTCTATCACCCTCTGAAATGTTTGATAAGCCTCTTCTCCATCCACTTGGAGTTCAAGGAAGCACCTGTCCATCTTGTTAACAGTCAAGACAGGTCTAATCCTCTCTCCCAAAGCCTGACGGAGCACGGTCTCTGTTTGGACACAAACACCTTCGACACAATCCACCACAACAAGGGCACCATCGGTAATACGCAAAGCAGCTGTAACCTCAGATGAGAAGTCAACGTGCCCGGGTGAATCAATAAGATTGATAAGATATTCATTTCCCTGTCTCTCTCCCTTGTAACTTTTCAAGGATTCATCAGACATCTCATAGTAGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCTGTAAGTGTCGACTTTCCTGAAATGCAAGGAAAGGGGGAGATAAAATAAGGGTTAAAAAAGATGTATAGTAACAATTTATTATTAGTTCATAATAGGCTTACAACTCTCTTTTTACTGTCAATACTCATCATTTTGATCAATGAGCAAATAGAAGTCCATGCAATTGTTTTGTATAGGAAACATGGTATGAAATTACAAAACATCAGAAGCAAGCCAAGCCAAGCCAAGAGGAAGATCACCCAAAAAAACAGAAAGTCCTCTTGTTATCCTAGAGATCAGTGAGTATATAACAGCCAAGCGTAGGATATTAAAATTTACACCATGAGAGGGTAACACCAAACATATAGTCAATGAATCAGTCTACATGAGTGTCCTGATCGTTAAATATCCTACTGTTTCTTTCCAAAGAGGTGGCAATAGATCAGCAAAAAAACTGGCTCCAACTTCCAATAGGGCTGCATCCTCTACAAGCATCCCTAATCTAACAAAAATTTGGTGCGCGTCTTCATAACTTAATTTCCAGCAGAAAGATTTTTACAATTCTAACATTTGAAAACCCTCAAAAAGTAGTCCAATTTAAATATTTTACCATGATCGACGTGAGCAATAACAGACATATTACGAATGTTATGCTTAAAGTCCATAATCCTACGAAGCTCCTCGGCTGTAAACTTCACCTGAACACAGAAAAGATTAAAGATGATTATTAAAGTGAAAAAGTACTTTCCAGATCGCAAAATTAACATCGTCAAGAGAAGAGCATACTGACCATCTTGACAAGTCTTCAAACTTCCCGATGTCCAAGAATTAG

mRNA sequence

ATGTTAGGGCCGGTAGTCTCAGGACCAAAGCACCAAATCTTCTTAGCAAGATCTTTGTCCCAACCAAACTCCTCTGACAAGATTTTAGACCTAACTTTAGGGTCATCCCGTGGTCCGATGCGGCCATCGTCAATAGCTTCTGCCAGTCCTTCCTCCATCGGTCGTGCTTCCATGTATAGACGATTGTGTTTGTTGGGGGATTTACTCATCACCGTGCGGCATGACCTCTCAAGGACAGTTTCACGGAAAGAGACAACAGGGTCAGATTTTATGATCTCAGCTCCACCCATGAAGTCATCTTGCAAATCCTTCAGACAGATCTCAAGATGCAGTTCTCCAGCACCGGCAACAATGTGCTCACCAGATTCCTCCATTGTACATACAACCATAGGATCTGACTTCGCCAGACGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCTACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCTATCGCAAAATTAACATCGTCAAGAGAAGAGCATACTGACCATCTTGACAAGTCTTCAAACTTCCCGATGTCCAAGAATTAG

Coding sequence (CDS)

ATGTTAGGGCCGGTAGTCTCAGGACCAAAGCACCAAATCTTCTTAGCAAGATCTTTGTCCCAACCAAACTCCTCTGACAAGATTTTAGACCTAACTTTAGGGTCATCCCGTGGTCCGATGCGGCCATCGTCAATAGCTTCTGCCAGTCCTTCCTCCATCGGTCGTGCTTCCATGTATAGACGATTGTGTTTGTTGGGGGATTTACTCATCACCGTGCGGCATGACCTCTCAAGGACAGTTTCACGGAAAGAGACAACAGGGTCAGATTTTATGATCTCAGCTCCACCCATGAAGTCATCTTGCAAATCCTTCAGACAGATCTCAAGATGCAGTTCTCCAGCACCGGCAACAATGTGCTCACCAGATTCCTCCATTGTACATACAACCATAGGATCTGACTTCGCCAGACGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCTACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCTATCGCAAAATTAACATCGTCAAGAGAAGAGCATACTGACCATCTTGACAAGTCTTCAAACTTCCCGATGTCCAAGAATTAG

Protein sequence

MLGPVVSGPKHQIFLARSLSQPNSSDKILDLTLGSSRGPMRPSSIASASPSSIGRASMYRRLCLLGDLLITVRHDLSRTVSRKETTGSDFMISAPPMKSSCKSFRQISRCSSPAPATMCSPDSSIVHTTIGSDFARRSKKFSPQSLSIIFDSSTPNLEAYIFAKLVRREIPVDLMVIPRSASSWRVSVIRTSPATSCAMIPAAATRESIAKLTSSREEHTDHLDKSSNFPMSKN
Homology
[Close]
BLAST of ClCG02G018330 vs. TrEMBL
Match: A0A146UKU3_FUNHE (Uncharacterized protein (Fragment) OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 82  RKETTGSDFMISAPPMKSSCKSFRQISRCSSPAPATMCSPDSSIVHTTIGSDFARR 138
           RK+TTGS+ +  AP MKSS +SFRQISRCSSPAPATMCSPDSS+ HTT GSD ARR
Sbjct: 1   RKDTTGSEILSGAPFMKSSWRSFRQISRCSSPAPATMCSPDSSMEHTTSGSDLARR 56

[Close]
BLAST of ClCG02G018330 vs. TrEMBL
Match: A0A0P0V7L2_ORYSJ (Os01g0723025 protein OS=Oryza sativa subsp. japonica GN=Os01g0723025 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 87  GSDFMISAPPMKSSCKSFRQISRCSSPAPATMCSPDSSIVHTTIGSDFARRSKKFSPQS 146
           G   MISAPPMKSS +S  QISR S P PA  CSPDSS+VHTT GSD ARR   F+P +
Sbjct: 3   GGPTMISAPPMKSSWRSLMQISRWSCPTPAMTCSPDSSMVHTTRGSDLARR---FNPST 58

[Close]
BLAST of ClCG02G018330 vs. TrEMBL
Match: A0A0L0C338_LUCCU (Uncharacterized protein OS=Lucilia cuprina GN=FF38_01376 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.4e-06
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 

Query: 104 FRQISRCSSPAPATMCSPDSSIVHTTIGSDFARR 138
           F QIS+C+SPAPA MCSPDSS++H TIGSD A+R
Sbjct: 236 FTQISKCNSPAPAMMCSPDSSMIHCTIGSDLAKR 269

[Close]
BLAST of ClCG02G018330 vs. NCBI nr
Match: gi|937898121|dbj|BAS74101.1| (Os01g0723025 [Oryza sativa Japonica Group])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 87  GSDFMISAPPMKSSCKSFRQISRCSSPAPATMCSPDSSIVHTTIGSDFARRSKKFSPQS 146
           G   MISAPPMKSS +S  QISR S P PA  CSPDSS+VHTT GSD ARR   F+P +
Sbjct: 3   GGPTMISAPPMKSSWRSLMQISRWSCPTPAMTCSPDSSMVHTTRGSDLARR---FNPST 58

[Close]
BLAST of ClCG02G018330 vs. NCBI nr
Match: gi|296082760|emb|CBI21765.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 97  MKSSCKSFRQISRCSSPAPATMCSPDSSIVHTTIGSDFARRSK 140
           MKSSC+SF+QISR SSPAPA MCSPDSSI+ TTIGSD A+R K
Sbjct: 1   MKSSCRSFKQISRWSSPAPAMMCSPDSSILQTTIGSDLAKRFK 43

The following BLAST results are available for this feature:
BLAST of ClCG02G018330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A146UKU3_FUNHE6.5e-1576.79Uncharacterized protein (Fragment) OS=Fundulus heteroclitus PE=4 SV=1[more]
A0A0P0V7L2_ORYSJ1.1e-0964.41Os01g0723025 protein OS=Oryza sativa subsp. japonica GN=Os01g0723025 PE=4 SV=1[more]
A0A0L0C338_LUCCU9.4e-0673.53Uncharacterized protein OS=Lucilia cuprina GN=FF38_01376 PE=4 SV=1[more]
BLAST of ClCG02G018330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937898121|dbj|BAS74101.1|1.5e-0964.41Os01g0723025 [Oryza sativa Japonica Group][more]
gi|296082760|emb|CBI21765.3|2.0e-0979.07unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G018330.1ClCG02G018330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G018330Melon (DHL92) v3.6.1medwcgB087
ClCG02G018330Melon (DHL92) v3.6.1medwcgB371
ClCG02G018330Silver-seed gourdcarwcgB0029
ClCG02G018330Silver-seed gourdcarwcgB0327
ClCG02G018330Silver-seed gourdcarwcgB0381
ClCG02G018330Silver-seed gourdcarwcgB0516
ClCG02G018330Cucumber (Chinese Long) v3cucwcgB460
ClCG02G018330Cucumber (Chinese Long) v3cucwcgB468
ClCG02G018330Watermelon (97103) v2wcgwmbB138
ClCG02G018330Watermelon (97103) v2wcgwmbB169
ClCG02G018330Wax gourdwcgwgoB278
ClCG02G018330Wax gourdwcgwgoB298
ClCG02G018330Watermelon (Charleston Gray)wcgwcgB014
ClCG02G018330Watermelon (Charleston Gray)wcgwcgB127
ClCG02G018330Cucumber (Gy14) v1cgywcgB233
ClCG02G018330Cucumber (Gy14) v1cgywcgB332
ClCG02G018330Cucumber (Gy14) v1cgywcgB387
ClCG02G018330Cucurbita maxima (Rimu)cmawcgB099
ClCG02G018330Cucurbita maxima (Rimu)cmawcgB192
ClCG02G018330Cucurbita maxima (Rimu)cmawcgB458
ClCG02G018330Cucurbita maxima (Rimu)cmawcgB481
ClCG02G018330Cucurbita maxima (Rimu)cmawcgB542
ClCG02G018330Cucurbita moschata (Rifu)cmowcgB090
ClCG02G018330Cucurbita moschata (Rifu)cmowcgB182
ClCG02G018330Cucurbita moschata (Rifu)cmowcgB457
ClCG02G018330Cucurbita moschata (Rifu)cmowcgB479
ClCG02G018330Cucurbita moschata (Rifu)cmowcgB539
ClCG02G018330Wild cucumber (PI 183967)cpiwcgB469
ClCG02G018330Wild cucumber (PI 183967)cpiwcgB460
ClCG02G018330Cucumber (Chinese Long) v2cuwcgB439
ClCG02G018330Cucumber (Chinese Long) v2cuwcgB448
ClCG02G018330Melon (DHL92) v3.5.1mewcgB107
ClCG02G018330Melon (DHL92) v3.5.1mewcgB377
ClCG02G018330Watermelon (97103) v1wcgwmB172
ClCG02G018330Watermelon (97103) v1wcgwmB186
ClCG02G018330Watermelon (97103) v1wcgwmB197
ClCG02G018330Cucurbita pepo (Zucchini)cpewcgB230
ClCG02G018330Cucurbita pepo (Zucchini)cpewcgB266
ClCG02G018330Cucurbita pepo (Zucchini)cpewcgB592
ClCG02G018330Cucurbita pepo (Zucchini)cpewcgB645
ClCG02G018330Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G018330Bottle gourd (USVL1VR-Ls)lsiwcgB099
ClCG02G018330Bottle gourd (USVL1VR-Ls)lsiwcgB181
ClCG02G018330Cucumber (Gy14) v2cgybwcgB404
ClCG02G018330Cucumber (Gy14) v2cgybwcgB412