ClCG02G017960 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATTAAAAGTTATAAAAATAAAAGCCTGCAATAGAGTGCAGGGGATCAGAACCCAATGAAAGAAATGGGTTTCTTATTGAGAGCTGTATTTGTAGTTCTCTCCATTTCTTTGGTCTTCCAGTTCCTCCCCCAAACAAATGCCCAAAATTCCAGCAATACCCTTGGCGCCCTCGCCGGAAAGTTGGCCGGAAAATGCAACATGTACCAAGGGAAATGGGTTTTCGACCCTTCTTACCCTCTTTACGATTCTTCCACTTGCCCCTTTGTAGATCCACAGTTCAATTGCCAAAAGTACGGCCGTCCCGACAAGTCGTACCTCAAGTATCGGTGGCAGCCTTTCGGCTGTGGGATTCCCAGGTAAAGACGACATGTCGTGTGAAAAAAAAAAAAGAAAAAAAAAAAGAAAAGATACAGAGGATTAATTAGAAATTGAAAATTGATTTGGTTGCAGGTTTAATGGGTTGAAGTTTGTGGAGAAATGGAGAGGGAAGAAGATAATGTTTGTGGGGGATTCGTTGAGCTTGAACCAGTGGGAATCATTGGCTTGTATGATTCATGCATGGCTTCCTAATTCAAAGACCACATTTGTTAGAAGAGACGCTCTTTCTTCTGTCACTTTTCAGGTAACCTAAACAAATTCTAAAATTACCTTCTACCCCTTCTTCTTCTTCTTCTTCTTCTATTCTACTTTCTCTTTTTTTATTGGGTATTTTTTTTTTTTTTTTTTTTTCCCTCTGATGGATTGCTTTTTGGTAAAAATAATCTTTATTGTTTTCTTCCTTTATTATTCATTTTCAGAAAGCTCATTTTTTTCTGCTTTGGTAGCACTCATGAAGAGTGTGTTTCAAATCACTTTTTAAATCATCTTTGTAAATACAAAAAGCAAAAATGTTTTGGAGATGTTACTCTTCATGTACGTGTATATATATAATTGAAAAAATAATAATTTATTTTTTTTGTTTTTATTTAATTTCTAAGTTTTGAATTTTATTTCAATTTAATCTTCTAGAATGATACAATTTTATTTTTGAAATTTTTTAAGTTTGAGTTTTCCTTCAATTTAATTTTTAGATTTCAAAATTTATCTTATCCTCTAATCTTTAACTAAATACTCAATTTTAGTTTTTAATATTGACGTCTATTAATGAATTTAAAAGAAATATTATTAATTAAATTTCACTATTTTAAGTTTATATTTTCATTTCATAATTATTTTAAAAGTAATTAATATACATTAATACCAAAAAAAAAATGAATATTTAATTTTAAAAAATTAAGATTAAAATTATAAACTTTTAAAAACTGGGAACAAAATTAAAATTAAACTCAAACCAAATCTAAGGACTAAAAAGAAGTTCGGACCCACAGAAAAAAACATTTTTCGCATGGAAATGTTTTGAAACACATGAAAAGTGGTTTTAAGTTGAATGAATTTTCTTTTTAAACAATAAAGCCGTTTTATATATATTAAAAAATGTTACTGTTCAGTAGCTTGTATATTTTTCAATCTCTATTTTGAGGTGTAAAATTAATGAATTAAGAACATCTAAGATGTAACTGTGATCATTTACAAGTCATTATAACTAATTTTCCTTTTTTCTAAAAAAAAATTACAACTAATTATGATTTTTTCCCCCAAAAACTATATAAAAAAAGAAAAGAAAAACAGAGAAAAGCTATTAATTTCAAATTTTATTTTAAGTTTATACTTTATAAGTAAAAGTGAAAAAAATATTTTCAATTCCGAGTACCATCTTTCATCTAGTCCCTAAGTTTAAAATATTGCATTTTTATCATTAAGATTTGAGTTTAATTTCTATTTGGTCAATAAGTTTTCAAATTTTACTTTTTTTACTATTGAGTTTTCATATAAATTTTTCATTTGAATCCCTAAATTTAGGAATTTTACTCTTTTACCCTTGAGTTTTAATGCTCAATTTTGGTCTTTAGTGTTAACTTTAATTTGATTAATTTATAATAATCACAAAATGGATTTTTTCAATTAATTTTAATAATTAAAAAAATTAATGAAAATTAACCTTTTGCAACCTAACGAAATTTAGAACAAGAAAGTATTGTTTTCCGTTTTTCCTAGGTCAAATTAAAATTTAAAAAAGAAAAAAGTTTATAAAACTCAATTAATGTGCGGTGAGTGAATAATCAATTTAATTAGCTCCAAAATAATATCAATATTATATTTGAATAGAAGATAAATAATGAAATATATTTAATATTATGGGGTTTCACTTTTTGAATGTATTGGTGAGCGTACTGAATGAGTCAGTGAAAGTGGAGCGTGATTGGCGGTTCCCAACATGTGACCCTCTTCAATCTTTATTCTCCTACCTTACTTTCTGTTTTTAACTTTACTCTTCATTTACTACCTTAATTAAAATATTTAATATTTTTAATTCAATTTTATGTTTAACAAAACATTCCATTTTCAATTTTTTTCTACTTCATTTTTTTTTATAAAATATCTAAAATTAATAGATTTATTTCACACAAAAGTGAAAATTCAAAAACTTATTCAACATTTGAACCTATTTAAATTGATTTACAAAGTAAGATTAACATTGGTTTATTAGGAATAATTAGTGGCATTATTGTTTTCTTATGGTCCCCTTCATGCCCACCAAACGAGTAAATGTATATTATATGGTCTAAATTCAATTCTTTATTATTGTGCCTATATAAAAAGTATGCTTTAAGGGTAAATAATAAATAATTGAACCACCGCTTTTGAAAGAATACTAAATTCCCTCATTAAAAAAAAAAAAAAAAAAAAAAAAAACCAATTGTTTTAATTGGCCAGTAAATATCCAAACTAACCTAAGTGGTTACCATAGATTTCAATCCATTCCTTGAAAGTCTGTTTATTATTTTCACATGCTCCAATTCTTTGGCCAACCGAATTATAGGCTTCATCATTTAATTTTTAGTGTCTAGATTTTAACTTTTTAAGGGAGTGTTTATTCAATTTTTATATTTAAAAAAAAAGGTTAAATTATAAGTTTAGTCTAAGTTTTGAAATTTCAATATTGTATTTAATAAGCCCTTATATATTAGATACTAAATTAGAAGTATAGGAGTACTATTAGATAAAATGTAATTTTATGTCTAAATTTTGAATATGTCAAGAATTTATTACACATTCTATTTAACCTATTAAACTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAATCCACAGACCTATTGGAGAGTACAGACTCATTAGAGATAAAATTAAAAGTAGTGCAAGGAATAATTAGATAAAAAACGAAAGTTGAAGGAGTAAAATTGTAATGAAGGAAAATTATGATTGAATGGAGTGTTTTTAAGTGCAGGATTACGGAGTAGAGCTATGGCTGTACAGAACGCCGTACCTGGTGGACATGGTGAACGAGAAGATCGGACGAGTTCTAAAACTTGACTCTATTCAGAGCGGCAACGCTTGGAAAGGAATGGATATGCTCATCTTCAACACTTGGCATTGGTGGACTCACACCGGATCTTCTCAGCCGTAAGCAATTTCTTCAACTACTTACCTCTCTGTTTTCCCCTGTTTTTTCCTCTTCTTCTTCTTCTTCAATTCTTATGGTTTCAACAAAAAACAAACCAGGTGGGATTACATTCAAGACGGAAACAGAGTAATGAAGGACATGAATCGTTACTTGGCCTATTACAAAGGCCTCACCACCTGGGGCAGATGGGTTAATCTCAACGTCGATCCTGCCAAAACCACCGTCTTCTTCCTCGGAATCTCCCCCACCCATTACATGTAAGTCAATCCCATACTTTTTTGTGTTTTGAATCAAGATTTTAGAAAATGGGTTGAAACAGAATTTGGTTTCAGTGGCAGAGACTGGAGCCAGCCCACGAAATCCTGCTCCGGCGAAACAGAGCCTTACTTCGGAGGAAGGTATCCGGCGGGAACGCCGATGGCTTGGGTGGTCGTCAATAAGGTTCTGAGTAGAATCAAGAAGCCGGTGGTGTTTCTTGATGTGACCACTCTGTCTCAGTACCGGAAGGATGGTCATCCGTCAGCTTACAGCGGGGATCACCCCGGCACCGATTGTAGCCATTGGTGCCTTCCTGGGTTGCCGGATACGTGGAATGAGCTGTTGTATGCGCATCTCTTTGCCTGAGAGTTTCTTGAACCGATTCACAGATTTCTGTTTGTTTATCTTTGTTAATGCGAAGAAAGAAGAATAAGGATTAGAAATTAATTTGGTGTTGATTA AAAAAAATTAAAAGTTATAAAAATAAAAGCCTGCAATAGAGTGCAGGGGATCAGAACCCAATGAAAGAAATGGGTTTCTTATTGAGAGCTGTATTTGTAGTTCTCTCCATTTCTTTGGTCTTCCAGTTCCTCCCCCAAACAAATGCCCAAAATTCCAGCAATACCCTTGGCGCCCTCGCCGGAAAGTTGGCCGGAAAATGCAACATGTACCAAGGGAAATGGGTTTTCGACCCTTCTTACCCTCTTTACGATTCTTCCACTTGCCCCTTTGTAGATCCACAGTTCAATTGCCAAAAGTACGGCCGTCCCGACAAGTCGTACCTCAAGTATCGGTGGCAGCCTTTCGGCTGTGGGATTCCCAGGTTTAATGGGTTGAAGTTTGTGGAGAAATGGAGAGGGAAGAAGATAATGTTTGTGGGGGATTCGTTGAGCTTGAACCAGTGGGAATCATTGGCTTGTATGATTCATGCATGGCTTCCTAATTCAAAGACCACATTTGTTAGAAGAGACGCTCTTTCTTCTGTCACTTTTCAGGATTACGGAGTAGAGCTATGGCTGTACAGAACGCCGTACCTGGTGGACATGGTGAACGAGAAGATCGGACGAGTTCTAAAACTTGACTCTATTCAGAGCGGCAACGCTTGGAAAGGAATGGATATGCTCATCTTCAACACTTGGCATTGGTGGACTCACACCGGATCTTCTCAGCCGTAAGCAATTTCTTCAACTACTTACCTCTCTGTTTTCCCCTGTTTTTTCCTCTTCTTCTTCTTCTTCAATTCTTATGGTTTCAACAAAAAACAAACCAGGTGGGATTACATTCAAGACGGAAACAGAGTAATGAAGGACATGAATCGTTACTTGGCCTATTACAAAGGCCTCACCACCTGGGGCAGATGGGTTAATCTCAACGTCGATCCTGCCAAAACCACCGTCTTCTTCCTCGGAATCTCCCCCACCCATTACATTGGCAGAGACTGGAGCCAGCCCACGAAATCCTGCTCCGGCGAAACAGAGCCTTACTTCGGAGGAAGGTATCCGGCGGGAACGCCGATGGCTTGGGTGGTCGTCAATAAGGTTCTGAGTAGAATCAAGAAGCCGGTGGTGTTTCTTGATGTGACCACTCTGTCTCAGTACCGGAAGGATGGTCATCCGTCAGCTTACAGCGGGGATCACCCCGGCACCGATTGTAGCCATTGGTGCCTTCCTGGGTTGCCGGATACGTGGAATGAGCTGTTGTATGCGCATCTCTTTGCCTGAGAGTTTCTTGAACCGATTCACAGATTTCTGTTTGTTTATCTTTGTTAATGCGAAGAAAGAAGAATAAGGATTAGAAATTAATTTGGTGTTGATTA ATGAAAGAAATGGGTTTCTTATTGAGAGCTGTATTTGTAGTTCTCTCCATTTCTTTGGTCTTCCAGTTCCTCCCCCAAACAAATGCCCAAAATTCCAGCAATACCCTTGGCGCCCTCGCCGGAAAGTTGGCCGGAAAATGCAACATGTACCAAGGGAAATGGGTTTTCGACCCTTCTTACCCTCTTTACGATTCTTCCACTTGCCCCTTTGTAGATCCACAGTTCAATTGCCAAAAGTACGGCCGTCCCGACAAGTCGTACCTCAAGTATCGGTGGCAGCCTTTCGGCTGTGGGATTCCCAGGTTTAATGGGTTGAAGTTTGTGGAGAAATGGAGAGGGAAGAAGATAATGTTTGTGGGGGATTCGTTGAGCTTGAACCAGTGGGAATCATTGGCTTGTATGATTCATGCATGGCTTCCTAATTCAAAGACCACATTTGTTAGAAGAGACGCTCTTTCTTCTGTCACTTTTCAGGATTACGGAGTAGAGCTATGGCTGTACAGAACGCCGTACCTGGTGGACATGGTGAACGAGAAGATCGGACGAGTTCTAAAACTTGACTCTATTCAGAGCGGCAACGCTTGGAAAGGAATGGATATGCTCATCTTCAACACTTGGCATTGGTGGACTCACACCGGATCTTCTCAGCCGTAA MKEMGFLLRAVFVVLSISLVFQFLPQTNAQNSSNTLGALAGKLAGKCNMYQGKWVFDPSYPLYDSSTCPFVDPQFNCQKYGRPDKSYLKYRWQPFGCGIPRFNGLKFVEKWRGKKIMFVGDSLSLNQWESLACMIHAWLPNSKTTFVRRDALSSVTFQDYGVELWLYRTPYLVDMVNEKIGRVLKLDSIQSGNAWKGMDMLIFNTWHWWTHTGSSQP
BLAST of ClCG02G017960 vs. Swiss-Prot
Match: TBL37_ARATH (Protein trichome birefringence-like 37 OS=Arabidopsis thaliana GN=TBL37 PE=2 SV=2) HSP 1 Score: 278.9 bits (712), Expect = 4.8e-74 Identity = 129/233 (55.36%), Postives = 169/233 (72.53%), Query Frame = 1
BLAST of ClCG02G017960 vs. Swiss-Prot
Match: TBL39_ARATH (Protein trichome birefringence-like 39 OS=Arabidopsis thaliana GN=TBL39 PE=2 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.1e-73 Identity = 122/207 (58.94%), Postives = 156/207 (75.36%), Query Frame = 1
BLAST of ClCG02G017960 vs. Swiss-Prot
Match: TBL38_ARATH (Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.1e-70 Identity = 116/189 (61.38%), Postives = 148/189 (78.31%), Query Frame = 1
BLAST of ClCG02G017960 vs. Swiss-Prot
Match: TBL40_ARATH (Protein trichome birefringence-like 40 OS=Arabidopsis thaliana GN=TBL40 PE=2 SV=2) HSP 1 Score: 255.8 bits (652), Expect = 4.4e-67 Identity = 120/216 (55.56%), Postives = 152/216 (70.37%), Query Frame = 1
BLAST of ClCG02G017960 vs. Swiss-Prot
Match: TBL41_ARATH (Protein trichome birefringence-like 41 OS=Arabidopsis thaliana GN=TBL41 PE=2 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 9.4e-62 Identity = 107/179 (59.78%), Postives = 134/179 (74.86%), Query Frame = 1
BLAST of ClCG02G017960 vs. TrEMBL
Match: A0A0A0KEH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G227020 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 2.6e-98 Identity = 175/225 (77.78%), Postives = 190/225 (84.44%), Query Frame = 1
BLAST of ClCG02G017960 vs. TrEMBL
Match: W9RYL9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004794 PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 7.7e-87 Identity = 147/221 (66.52%), Postives = 181/221 (81.90%), Query Frame = 1
BLAST of ClCG02G017960 vs. TrEMBL
Match: A0A151SEP4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024677 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 2.7e-84 Identity = 143/220 (65.00%), Postives = 178/220 (80.91%), Query Frame = 1
BLAST of ClCG02G017960 vs. TrEMBL
Match: F6H4Y4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02440 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 2.7e-84 Identity = 139/214 (64.95%), Postives = 176/214 (82.24%), Query Frame = 1
BLAST of ClCG02G017960 vs. TrEMBL
Match: A0A0S3SHN7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G104600 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 3.0e-83 Identity = 141/220 (64.09%), Postives = 177/220 (80.45%), Query Frame = 1
BLAST of ClCG02G017960 vs. TAIR10
Match: AT2G34070.1 (AT2G34070.1 TRICHOME BIREFRINGENCE-LIKE 37) HSP 1 Score: 278.9 bits (712), Expect = 2.7e-75 Identity = 129/233 (55.36%), Postives = 169/233 (72.53%), Query Frame = 1
BLAST of ClCG02G017960 vs. TAIR10
Match: AT2G42570.1 (AT2G42570.1 TRICHOME BIREFRINGENCE-LIKE 39) HSP 1 Score: 277.7 bits (709), Expect = 6.0e-75 Identity = 122/207 (58.94%), Postives = 156/207 (75.36%), Query Frame = 1
BLAST of ClCG02G017960 vs. TAIR10
Match: AT1G29050.1 (AT1G29050.1 TRICHOME BIREFRINGENCE-LIKE 38) HSP 1 Score: 267.7 bits (683), Expect = 6.3e-72 Identity = 116/189 (61.38%), Postives = 148/189 (78.31%), Query Frame = 1
BLAST of ClCG02G017960 vs. TAIR10
Match: AT2G31110.2 (AT2G31110.2 Plant protein of unknown function (DUF828)) HSP 1 Score: 255.8 bits (652), Expect = 2.5e-68 Identity = 120/216 (55.56%), Postives = 152/216 (70.37%), Query Frame = 1
BLAST of ClCG02G017960 vs. TAIR10
Match: AT3G14850.2 (AT3G14850.2 TRICHOME BIREFRINGENCE-LIKE 41) HSP 1 Score: 238.0 bits (606), Expect = 5.3e-63 Identity = 107/179 (59.78%), Postives = 134/179 (74.86%), Query Frame = 1
BLAST of ClCG02G017960 vs. NCBI nr
Match: gi|449463298|ref|XP_004149371.1| (PREDICTED: protein trichome birefringence-like 39 [Cucumis sativus]) HSP 1 Score: 366.3 bits (939), Expect = 3.7e-98 Identity = 175/225 (77.78%), Postives = 190/225 (84.44%), Query Frame = 1
BLAST of ClCG02G017960 vs. NCBI nr
Match: gi|703109704|ref|XP_010099368.1| (hypothetical protein L484_004794 [Morus notabilis]) HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86 Identity = 147/221 (66.52%), Postives = 181/221 (81.90%), Query Frame = 1
BLAST of ClCG02G017960 vs. NCBI nr
Match: gi|1009128479|ref|XP_015881254.1| (PREDICTED: protein trichome birefringence-like 39 [Ziziphus jujuba]) HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86 Identity = 148/223 (66.37%), Postives = 183/223 (82.06%), Query Frame = 1
BLAST of ClCG02G017960 vs. NCBI nr
Match: gi|645278981|ref|XP_008244484.1| (PREDICTED: protein trichome birefringence-like 39 [Prunus mume]) HSP 1 Score: 321.2 bits (822), Expect = 1.4e-84 Identity = 153/232 (65.95%), Postives = 180/232 (77.59%), Query Frame = 1
BLAST of ClCG02G017960 vs. NCBI nr
Match: gi|595862508|ref|XP_007211411.1| (hypothetical protein PRUPE_ppa007013mg [Prunus persica]) HSP 1 Score: 320.5 bits (820), Expect = 2.3e-84 Identity = 152/238 (63.87%), Postives = 183/238 (76.89%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |