ClCG02G017440 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G017440
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Cell wall protein
Location	CG_Chr02 : 31938612 .. 31938974 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGGTGTTAAAGAAAAATCCTATCCTTGA

mRNA sequence

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGGTGTTAAAGAAAAATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGGTGTTAAAGAAAAATCCTATCCTTGA

Protein sequence

MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGVKEKSYP

Homology

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BLAST of ClCG02G017440 vs. Swiss-Prot
Match: CWPX_ARATH (Putative cell wall protein OS=Arabidopsis thaliana GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 39/122 (31.97%), Postives = 53/122 (43.44%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITG-EAVAARNFRGRSSIDDDKKQPQWLVGYDGV-SVLVPGI 60
           MA   I S +++ ++ L +   E V+      +S    D K P +LV  +   ++L+PG+
Sbjct: 1   MASSLITSAVIVVVLSLVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGV 60

Query: 61  GRITLSPYDKGSH------------GGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVP 109
           GR  L P  K               GGG     G   A     +PGGDD  +PNPGFE P
Sbjct: 61  GRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAP 120

[Close]

BLAST of ClCG02G017440 vs. TrEMBL
Match: A0A0A0KCX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-24
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+R IPS+L IFLVIL +TGEAVA  +                      VSVL+PGIGR
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVALCST---------------------VSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGVKEKSYP 120
           +TLS        GGH+  YGSNPAPRR+YIPGGD NFIPNPG+EV I A+I GVKE SYP
Sbjct: 61  LTLSR-------GGHSSSYGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of ClCG02G017440 vs. TrEMBL
Match: M5XEW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023037mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDK 68
           L+ I +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PG+GR+ + P   
Sbjct: 12  LISILVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGLGRVLIPPRHN 71

Query: 69  -------------GSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                        GS GG  +G     P+    Y+PGGDD F+PNPG+EVPIP N
Sbjct: 72  VVPQTPFPNNGRTGSTGGSGSG---QTPSTGHDYVPGGDDTFVPNPGYEVPIPGN 118

[Close]

BLAST of ClCG02G017440 vs. TrEMBL
Match: F6HIG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01830 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+    SL+ + ++   + G+A+AAR     S    DKKQP+W +  DG S+L+PG+GR
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSK-KVDKKQPEWFIEPDG-SLLIPGLGR 60

Query: 61  ITL------SPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGV 120
           + +      +PYD GS   G +G  GS       YIPGGDD F+PNPG E+P PA   GV
Sbjct: 61  VMVPGYGSYTPYD-GSIPSGSSGSDGSTGGTGS-YIPGGDDTFVPNPGVEIPNPAGGGGV 120

[Close]

BLAST of ClCG02G017440 vs. TrEMBL
Match: A5ADZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000181 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 52/126 (41.27%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+    SL+ + ++   + G+A+AAR     S    DKKQP+W +  DG S+L+PG+GR
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSK-KVDKKQPEWFIEPDG-SLLIPGLGR 60

Query: 61  ITL------SPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGV 120
           + +      +PYD GS   G +G  GS       YIPGGDD F+PNPG E+P PA   GV
Sbjct: 61  VMVPGYGSYTPYD-GSIPSGSSGSDGSTGGTGS-YIPGGDDTFVPNPGVEIPNPAGGGGV 120

[Close]

BLAST of ClCG02G017440 vs. TrEMBL
Match: E3WHD3_9ROSI (Putative uncharacterized protein Tam-RVIP1 OS=Vitis hybrid cultivar GN=Tam-RVIP1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-14
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+    SL+ + ++   + G+A+AAR     S    DKKQP+W +  DG S+L+PG+GR
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSK-KVDKKQPEWFIEPDG-SLLIPGVGR 60

Query: 61  ITLSPYDK-----GSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGVK 120
           + +  Y       GS   G +G  GS       YIPGGDD F+PNPG E+P PA   GV 
Sbjct: 61  VMVPGYGSYTPYGGSIPSGSSGSDGSTGGTGS-YIPGGDDTFVPNPGVEIPNPAGGGGVP 120

[Close]

BLAST of ClCG02G017440 vs. TAIR10
Match: AT2G20870.1 (AT2G20870.1 cell wall protein precursor, putative)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-09
Identity = 39/122 (31.97%), Postives = 53/122 (43.44%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITG-EAVAARNFRGRSSIDDDKKQPQWLVGYDGV-SVLVPGI 60
           MA   I S +++ ++ L +   E V+      +S    D K P +LV  +   ++L+PG+
Sbjct: 1   MASSLITSAVIVVVLSLVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGV 60

Query: 61  GRITLSPYDKGSH------------GGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVP 109
           GR  L P  K               GGG     G   A     +PGGDD  +PNPGFE P
Sbjct: 61  GRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAP 120

[Close]

BLAST of ClCG02G017440 vs. NCBI nr
Match: gi|700191495|gb|KGN46699.1| (hypothetical protein Csa_6G124140 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+R IPS+L IFLVIL +TGEAVA  +                      VSVL+PGIGR
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVALCST---------------------VSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDGVKEKSYP 120
           +TLS        GGH+  YGSNPAPRR+YIPGGD NFIPNPG+EV I A+I GVKE SYP
Sbjct: 61  LTLSR-------GGHSSSYGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of ClCG02G017440 vs. NCBI nr
Match: gi|1009127329|ref|XP_015880640.1| (PREDICTED: putative cell wall protein [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 1   MAYRTIPSLLLIFLVILTITGE-AVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIG 60
           MA +T+PSLL +F ++L IT E A+A RN     S  ++ K P WL  +   S L+PGIG
Sbjct: 1   MALKTVPSLLSLFAILLAITTETAIAGRNVPNHDSKKEEVKHPDWLFDHHDGSFLIPGIG 60

Query: 61  RITLSPYDKGS------HGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDG 120
           R+ + P   G       + G   G  GS    R  Y+PG DD F+PNPGFEVPIP +  G
Sbjct: 61  RVMVPPAFGGGSSPHTPYTGNIGG--GSGAGARHTYVPGADDTFVPNPGFEVPIPGSGRG 120

[Close]

BLAST of ClCG02G017440 vs. NCBI nr
Match: gi|595951892|ref|XP_007216421.1| (hypothetical protein PRUPE_ppa023037mg [Prunus persica])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDK 68
           L+ I +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PG+GR+ + P   
Sbjct: 12  LISILVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGLGRVLIPPRHN 71

Query: 69  -------------GSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                        GS GG  +G     P+    Y+PGGDD F+PNPG+EVPIP N
Sbjct: 72  VVPQTPFPNNGRTGSTGGSGSG---QTPSTGHDYVPGGDDTFVPNPGYEVPIPGN 118

[Close]

BLAST of ClCG02G017440 vs. NCBI nr
Match: gi|645248345|ref|XP_008230254.1| (PREDICTED: putative cell wall protein [Prunus mume])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY-- 68
           L+ + +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+   P   
Sbjct: 12  LISLLVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SHLIPGIGRVIFPPLHN 71

Query: 69  --------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                   D GS G       G  P+    Y+PGGDD F+PNPG+EVP P N
Sbjct: 72  VVPQTPFPDNGSTGNTGGSGSGEAPSTGHDYVPGGDDTFVPNPGYEVPNPGN 118

[Close]

BLAST of ClCG02G017440 vs. NCBI nr
Match: gi|470140573|ref|XP_004306014.1| (PREDICTED: putative cell wall protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 2   AYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRI 61
           ++ ++  LL IF+++LT+TG+A A RN   +++  D+KK+PQ+L G+DG S L+PG GR+
Sbjct: 6   SHSSLLPLLAIFVILLTVTGQAFAGRNAPKQTN-KDEKKEPQFLFGHDG-SFLIPGFGRV 65

Query: 62  TLSPYD--------KGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
              PY              GG  G  G++P P R Y+PGGDD F+PNPGFEVP P +
Sbjct: 66  A-KPYKFFPYRPPYTAPRTGGSTGT-GASP-PGRNYVPGGDDTFVPNPGFEVPNPGH 117

The following BLAST results are available for this feature:

BLAST of ClCG02G017440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CWPX_ARATH	1.6e-07	31.97	Putative cell wall protein OS=Arabidopsis thaliana GN=At2g20870 PE=2 SV=2	[more]

BLAST of ClCG02G017440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCX5_CUCSA	2.3e-24	56.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1	[more]
M5XEW2_PRUPE	2.1e-17	44.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023037mg PE=4 SV=1	[more]
F6HIG9_VITVI	1.3e-14	42.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01830 PE=4 SV=...	[more]
A5ADZ0_VITVI	2.8e-14	41.27	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000181 PE=4 SV=1	[more]
E3WHD3_9ROSI	8.2e-14	40.00	Putative uncharacterized protein Tam-RVIP1 OS=Vitis hybrid cultivar GN=Tam-RVIP1...	[more]

BLAST of ClCG02G017440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20870.1	9.3e-09	31.97	cell wall protein precursor, putative	[more]

BLAST of ClCG02G017440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191495\|gb\|KGN46699.1\|	3.3e-24	56.67	hypothetical protein Csa_6G124140 [Cucumis sativus]	[more]
gi\|1009127329\|ref\|XP_015880640.1\|	2.3e-17	41.73	PREDICTED: putative cell wall protein [Ziziphus jujuba]	[more]
gi\|595951892\|ref\|XP_007216421.1\|	3.0e-17	44.35	hypothetical protein PRUPE_ppa023037mg [Prunus persica]	[more]
gi\|645248345\|ref\|XP_008230254.1\|	6.7e-17	44.64	PREDICTED: putative cell wall protein [Prunus mume]	[more]
gi\|470140573\|ref\|XP_004306014.1\|	3.3e-16	44.44	PREDICTED: putative cell wall protein [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006470	protein dephosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004722	protein serine/threonine phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G017440.1	ClCG02G017440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36733	FAMILY NOT NAMED	coord: 2..120 score: 1.4
None	No IPR available	PANTHER	PTHR36733:SF1	CELL WALL PROTEIN-RELATED	coord: 2..120 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G017440	Csa6G124140	Cucumber (Chinese Long) v2	cuwcgB445
ClCG02G017440	Cla013581	Watermelon (97103) v1	wcgwmB197
ClCG02G017440	Cla97C02G043170	Watermelon (97103) v2	wcgwmbB138
ClCG02G017440	Bhi10G000885	Wax gourd	wcgwgoB298
ClCG02G017440	CSPI06G10060	Wild cucumber (PI 183967)	cpiwcgB467
ClCG02G017440	Cucsa.119480	Cucumber (Gy14) v1	cgywcgB186
ClCG02G017440	CmoCh02G001170	Cucurbita moschata (Rifu)	cmowcgB539
ClCG02G017440	Lsi10G008750	Bottle gourd (USVL1VR-Ls)	lsiwcgB046
ClCG02G017440	CsGy6G010200	Cucumber (Gy14) v2	cgybwcgB410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G017440	Cucumber (Chinese Long) v2	cuwcgB541
ClCG02G017440	Melon (DHL92) v3.5.1	mewcgB202
ClCG02G017440	Watermelon (97103) v1	wcgwmB204
ClCG02G017440	Cucurbita pepo (Zucchini)	cpewcgB230
ClCG02G017440	Cucurbita pepo (Zucchini)	cpewcgB259
ClCG02G017440	Cucurbita pepo (Zucchini)	cpewcgB592
ClCG02G017440	Cucurbita pepo (Zucchini)	cpewcgB645
ClCG02G017440	Bottle gourd (USVL1VR-Ls)	lsiwcgB092
ClCG02G017440	Cucumber (Gy14) v2	cgybwcgB499
ClCG02G017440	Melon (DHL92) v3.6.1	medwcgB197
ClCG02G017440	Silver-seed gourd	carwcgB0029
ClCG02G017440	Silver-seed gourd	carwcgB0325
ClCG02G017440	Silver-seed gourd	carwcgB0695
ClCG02G017440	Silver-seed gourd	carwcgB0850
ClCG02G017440	Cucumber (Chinese Long) v3	cucwcgB564
ClCG02G017440	Watermelon (97103) v2	wcgwmbB146
ClCG02G017440	Wax gourd	wcgwgoB270
ClCG02G017440	Watermelon (Charleston Gray)	wcgwcgB119
ClCG02G017440	Cucumber (Gy14) v1	cgywcgB250
ClCG02G017440	Cucurbita maxima (Rimu)	cmawcgB458
ClCG02G017440	Cucurbita maxima (Rimu)	cmawcgB498
ClCG02G017440	Cucurbita maxima (Rimu)	cmawcgB542
ClCG02G017440	Cucurbita moschata (Rifu)	cmowcgB457
ClCG02G017440	Cucurbita moschata (Rifu)	cmowcgB494
ClCG02G017440	Wild cucumber (PI 183967)	cpiwcgB569