ClCG02G014710 (gene) Watermelon (Charleston Gray)

NameClCG02G014710
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNIM1-interacting 3 LENGTH=112
LocationCG_Chr02 : 29081669 .. 29082034 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGTAAGAAAAAGAAGAAAATTGCAGAATAATAATGGGAAAGAAGATGATGAAGATGAAGAGGAAAAGCTGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

mRNA sequence

ATGGAAGGAGTAAGAAAAAGAAGAAAATTGCAGAATAATAATGGGAAAGAAGATGATGAAGATGAAGAGGAAAAGCTGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAGGAGTAAGAAAAAGAAGAAAATTGCAGAATAATAATGGGAAAGAAGATGATGAAGATGAAGAGGAAAAGCTGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

Protein sequence

MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRMKPKEPTEEEKSKGVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKGKNGLNLNLSL
BLAST of ClCG02G014710 vs. Swiss-Prot
Match: NIMI3_ARATH (Protein NIM1-INTERACTING 3 OS=Arabidopsis thaliana GN=NIMIN-3 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-07
Identity = 41/125 (32.80%), Postives = 66/125 (52.80%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMR----DRMKPKEPTEEEKSKG 60
           M+  RKR K+      E ++DEEEK++  + +++N + MR      M+ K   EEE+++ 
Sbjct: 1   MDRDRKRVKM------EKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEERARV 60

Query: 61  VWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKGKNGLN 120
              P FQPEDFI     + NK+  N  +  A++  +  SNE  +  ++K +  +    L+
Sbjct: 61  RRFPSFQPEDFI-----FMNKAEAN-NIEKAANESSSASNE-YDGSKEKQEGSETNVCLD 112

Query: 121 LNLSL 122
           LNLSL
Sbjct: 121 LNLSL 112

BLAST of ClCG02G014710 vs. TrEMBL
Match: A0A0A0LJ23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034770 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-34
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRMK-PKEPTEEEKSKGVWN 60
           ME  RKRRKLQ    +E++E+E+EK++LF+ALIQNTKAMRD MK  KE TEEEKSKGVWN
Sbjct: 1   MESGRKRRKLQ----EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWN 60

Query: 61  PKFQPEDFIEDNG-NYNNKSN-INLQLAAASSSKTKQSNEKREEQEDKD-KVGKGKNGLN 120
           PKFQPEDF E++G NYNNKSN I LQL+AASSS TKQ NEK++++EDK  KV + K GL+
Sbjct: 61  PKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLD 120

Query: 121 LNLSL 122
           LNLSL
Sbjct: 121 LNLSL 121

BLAST of ClCG02G014710 vs. TrEMBL
Match: A0A0D2U4L1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208900 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 59/141 (41.84%), Postives = 82/141 (58.16%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKED-DEDEEEKLKLFFALIQNTKAMRDRMK----PKEPTEEEKSK 60
           ME  RK+RK+ N   K+D D+DEEEK++ FFALI++T+ MRDR++    P  P EEE  K
Sbjct: 1   MESGRKKRKMGNEEEKDDEDDDEEEKVEKFFALIRSTREMRDRLRSAAVPNGPKEEEYQK 60

Query: 61  ---------------GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKRE 120
                          G WNP FQ EDF+E + + +  +++ L +A  SSS  ++  EKR 
Sbjct: 61  KKQEDKAVVGGGGGVGQWNPTFQAEDFMEGSISRSGNNSLGLNVAGPSSSNVQREPEKRT 120

Query: 121 EQEDKDKVGKGKNGLNLNLSL 122
           E    D  G+G  GL+L LSL
Sbjct: 121 E----DDGGEGGGGLDLKLSL 137

BLAST of ClCG02G014710 vs. TrEMBL
Match: A0A061F4Z3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026807 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-14
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEE---------EKLKLFFALIQNTKAMRDRMK--PKEPT 60
           ME  RK+RK+ N   +EDDE+EE         EK++ FFALI++T+ MRDR++  P    
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  EEEKSK--------GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREE 120
           EEE+ K         VWNPKFQPEDF+ED+   N        L A + +    + E+ + 
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMEDSKPKN--------LLAVNEAGPSSNREQEQG 120

Query: 121 QEDKDKVGKGKNGLNLNLSL 122
           Q+ K+  G    GL+L LSL
Sbjct: 121 QDTKE--GGEDGGLDLKLSL 130

BLAST of ClCG02G014710 vs. TrEMBL
Match: V4SLD2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013538mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 5   RKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRMKPKEPTEEEKSK--------- 64
           + +RKLQN   +E  E+EEEK++ FFALI+NTK M DR++  E  +EEK K         
Sbjct: 14  KNKRKLQNEELQEQ-ENEEEKVEQFFALIRNTKEMHDRLRNSEGLKEEKEKQMEQEIKAA 73

Query: 65  ---GVWNPKFQPEDFIE-DNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKG 122
                WNP FQPEDF E D  N N   N   +     SS   Q NE+ +E+ +  K  + 
Sbjct: 74  KVSAAWNPTFQPEDFTEGDINNINASKNFFGENQQVGSSSKIQENEEEKEKAEARK--EA 133

BLAST of ClCG02G014710 vs. TrEMBL
Match: A0A0B0NY26_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22673 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-13
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1

Query: 6   KRRKLQNNNGKED---DEDEEEKLKLFFALIQNTKAMRDRMK----PKEPTEEEKSK--- 65
           K+RK+ N   K+D   D+DEEEK++ FFALI++T+ MRDR++    P  P EEE  K   
Sbjct: 20  KKRKMGNEEEKDDEDEDDDEEEKVEKFFALIRSTREMRDRLRNAAVPNGPKEEEYQKKKQ 79

Query: 66  ------------GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQE 116
                       G WNP FQ EDF+E + + +  +++ L +A  SSSK ++  EK  E +
Sbjct: 80  EDKAVVVGGGGVGQWNPTFQAEDFMEGSISRSENNSLGLNVAGPSSSKVQREPEKGTEDD 139

BLAST of ClCG02G014710 vs. TAIR10
Match: AT1G09415.1 (AT1G09415.1 NIM1-interacting 3)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-08
Identity = 41/125 (32.80%), Postives = 66/125 (52.80%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMR----DRMKPKEPTEEEKSKG 60
           M+  RKR K+      E ++DEEEK++  + +++N + MR      M+ K   EEE+++ 
Sbjct: 1   MDRDRKRVKM------EKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEERARV 60

Query: 61  VWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKGKNGLN 120
              P FQPEDFI     + NK+  N  +  A++  +  SNE  +  ++K +  +    L+
Sbjct: 61  RRFPSFQPEDFI-----FMNKAEAN-NIEKAANESSSASNE-YDGSKEKQEGSETNVCLD 112

Query: 121 LNLSL 122
           LNLSL
Sbjct: 121 LNLSL 112

BLAST of ClCG02G014710 vs. TAIR10
Match: AT4G01895.1 (AT4G01895.1 systemic acquired resistance (SAR) regulator protein NIMIN-1-related)

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 1

Query: 5   RKRRKLQNNNGKEDDEDEEE-----KLKLFFALIQNTKAMRDRMK----------PKEPT 64
           ++  K +N    E DEDEEE     K+ +FF LI+N +  + R +             PT
Sbjct: 3   QEEEKTENKRINEIDEDEEEELENKKMDMFFNLIKNYQDAKKRRRQYLTQDSGDVASMPT 62

Query: 65  EEEKSKGVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKD--- 122
           +      V  P F+ EDF       ++  ++NL+ + +  S   Q  EK+EE+E++D   
Sbjct: 63  KRSDYSIV--PVFRAEDF-------SHCMDLNLKPSNSIISTKNQEEEKQEEEEEEDDEE 122

BLAST of ClCG02G014710 vs. NCBI nr
Match: gi|700205905|gb|KGN61024.1| (hypothetical protein Csa_2G034770 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 6.1e-34
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRMK-PKEPTEEEKSKGVWN 60
           ME  RKRRKLQ    +E++E+E+EK++LF+ALIQNTKAMRD MK  KE TEEEKSKGVWN
Sbjct: 1   MESGRKRRKLQ----EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWN 60

Query: 61  PKFQPEDFIEDNG-NYNNKSN-INLQLAAASSSKTKQSNEKREEQEDKD-KVGKGKNGLN 120
           PKFQPEDF E++G NYNNKSN I LQL+AASSS TKQ NEK++++EDK  KV + K GL+
Sbjct: 61  PKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLD 120

Query: 121 LNLSL 122
           LNLSL
Sbjct: 121 LNLSL 121

BLAST of ClCG02G014710 vs. NCBI nr
Match: gi|823264366|ref|XP_012464926.1| (PREDICTED: uncharacterized protein LOC105783814 [Gossypium raimondii])

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 59/141 (41.84%), Postives = 82/141 (58.16%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKED-DEDEEEKLKLFFALIQNTKAMRDRMK----PKEPTEEEKSK 60
           ME  RK+RK+ N   K+D D+DEEEK++ FFALI++T+ MRDR++    P  P EEE  K
Sbjct: 1   MESGRKKRKMGNEEEKDDEDDDEEEKVEKFFALIRSTREMRDRLRSAAVPNGPKEEEYQK 60

Query: 61  ---------------GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKRE 120
                          G WNP FQ EDF+E + + +  +++ L +A  SSS  ++  EKR 
Sbjct: 61  KKQEDKAVVGGGGGVGQWNPTFQAEDFMEGSISRSGNNSLGLNVAGPSSSNVQREPEKRT 120

Query: 121 EQEDKDKVGKGKNGLNLNLSL 122
           E    D  G+G  GL+L LSL
Sbjct: 121 E----DDGGEGGGGLDLKLSL 137

BLAST of ClCG02G014710 vs. NCBI nr
Match: gi|590644944|ref|XP_007031220.1| (Uncharacterized protein TCM_026807 [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 9.1e-14
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEE---------EKLKLFFALIQNTKAMRDRMK--PKEPT 60
           ME  RK+RK+ N   +EDDE+EE         EK++ FFALI++T+ MRDR++  P    
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  EEEKSK--------GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREE 120
           EEE+ K         VWNPKFQPEDF+ED+   N        L A + +    + E+ + 
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMEDSKPKN--------LLAVNEAGPSSNREQEQG 120

Query: 121 QEDKDKVGKGKNGLNLNLSL 122
           Q+ K+  G    GL+L LSL
Sbjct: 121 QDTKE--GGEDGGLDLKLSL 130

BLAST of ClCG02G014710 vs. NCBI nr
Match: gi|657999954|ref|XP_008392413.1| (PREDICTED: protein NIM1-INTERACTING 1 [Malus domestica])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRM---------KPKEPTEE 60
           MEG  K+RK++     +++EDEEEK++ F+ALI++T+ +R  +         K  E  E+
Sbjct: 1   MEGGGKKRKME-----DEEEDEEEKIEKFYALIRSTREVRQLLRGNSNGSKEKKYEKKED 60

Query: 61  EKSKGVWNPKFQPEDFIED---NGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKV 120
           +K+ G WNP FQPEDF+ED   +G++              SSK KQ  +K+EE       
Sbjct: 61  DKAAGGWNPTFQPEDFLEDVKISGHH-----------GGGSSKAKQEEDKKEED------ 110

Query: 121 GKGKNGLNLNLSL 122
            K  NGLNLNLSL
Sbjct: 121 -KXSNGLNLNLSL 110

BLAST of ClCG02G014710 vs. NCBI nr
Match: gi|658042551|ref|XP_008356898.1| (PREDICTED: protein NIM1-INTERACTING 3-like [Malus domestica])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1

Query: 1   MEGVRKRRKLQNNNGKEDDEDEEEKLKLFFALIQNTKAMRDRMK-----PKEPTEEEKSK 60
           MEG RK+RK+     K ++EDEEEK++ FFALI++T+ +R+R++      KE T+E+K +
Sbjct: 1   MEGGRKKRKM-----KIEEEDEEEKIEKFFALIRSTREVRERLRGNSNVSKEKTDEKKKE 60

Query: 61  -----GVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGK 120
                G WNP FQPEDF+ED                      K+S EK    EDK + G+
Sbjct: 61  DGKAAGSWNPTFQPEDFLED---------------------VKKSGEK----EDKKENGE 100

Query: 121 GKNGLNLNLSL 122
           G NG+NLNLSL
Sbjct: 121 G-NGINLNLSL 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NIMI3_ARATH4.8e-0732.80Protein NIM1-INTERACTING 3 OS=Arabidopsis thaliana GN=NIMIN-3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LJ23_CUCSA4.2e-3469.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034770 PE=4 SV=1[more]
A0A0D2U4L1_GOSRA3.6e-1741.84Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208900 PE=4 SV=1[more]
A0A061F4Z3_THECC6.3e-1440.00Uncharacterized protein OS=Theobroma cacao GN=TCM_026807 PE=4 SV=1[more]
V4SLD2_9ROSI1.8e-1341.54Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013538mg PE=4 SV=1[more]
A0A0B0NY26_GOSAR7.0e-1337.88Uncharacterized protein OS=Gossypium arboreum GN=F383_22673 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G09415.12.7e-0832.80 NIM1-interacting 3[more]
AT4G01895.17.4e-0629.25 systemic acquired resistance (SAR) regulator protein NIMIN-1-related[more]
Match NameE-valueIdentityDescription
gi|700205905|gb|KGN61024.1|6.1e-3469.60hypothetical protein Csa_2G034770 [Cucumis sativus][more]
gi|823264366|ref|XP_012464926.1|5.2e-1741.84PREDICTED: uncharacterized protein LOC105783814 [Gossypium raimondii][more]
gi|590644944|ref|XP_007031220.1|9.1e-1440.00Uncharacterized protein TCM_026807 [Theobroma cacao][more]
gi|657999954|ref|XP_008392413.1|1.2e-1339.85PREDICTED: protein NIM1-INTERACTING 1 [Malus domestica][more]
gi|658042551|ref|XP_008356898.1|1.6e-1342.75PREDICTED: protein NIM1-INTERACTING 3-like [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Biological Process
TermDefinition
GO:0010112regulation of systemic acquired resistance
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G014710.1ClCG02G014710.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33669FAMILY NOT NAMEDcoord: 1..121
score: 8.9
NoneNo IPR availablePANTHERPTHR33669:SF2SUBFAMILY NOT NAMEDcoord: 1..121
score: 8.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None