ClCG02G013680 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G013680
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Arginine/serine-rich splicing factor RS2Z39 transcript V
Location	CG_Chr02 : 27711552 .. 27714245 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTGTTTTCAGGTGCGCCTCGCCTCCTCCTTCGAGTTTTCTAGGTTTTCTTTCCTCGAATCCTCCGACTCCATATTCATAGCGTTTTTCTATTGAATTTTTAGCTCAATCAAGGTTCTTGTTGTCTCTAACTTGATTATTAAAGAAATTTCTTAGCTTTTTCTCTTCGATTTCTCAAATAGTTGAATCGTATTTATGTTCATTTGTTTCGACGTATTTTGTTTTGAATACCTGCTCAAATAATTGTTTTTTTGAATACTGTCGCTGATTGGGGTACTGTGGTTGTTGATTTTAGATAAAATGCCTCGATATGATGATCGTTATGGTGGTACTCGGCTCTACGTTGGGCGCCTTTCTTCACGGACGAGGTCCCGTGATCTTGATGACCTGTTCAGTCGTTATGGAAGGTATGTAGATTATTGCTGGGTGTACTATTCAACCGTGGTCGAATTTGTGTGCTAACATTAATTTGATGAATTCGGAAAGTTCGTGTGTTCAGTTATGCCGTATGTTCTTCCTATTGTCCCGGTTTTTCTATTGCTAACATCCTTGTCAGAGTAAATTTTTAATTGATACTTCTCTCGAGACCTCTTGAGGTATTTGCCAAGCCCTATTTTGGGTACACAACTGTGAATGTGTATTTTGTTATATCCATGAAAGTGTGGAATTGTTGATGGGTCTGTGTGGTTTAACTTGAGTGATCTTGTTGAAGGTTTCTTGGCTTATGCCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAGTTCATCTATGAGGGGCGAGGTGTCAACCCTTTGATACTTGTATCAAATGATGGCCTTACCTGTTTCTGGAACCAATTTGCGCAGAGTACGCGATGTGGATATGAAGCGAGACTATGCATTTGTTGTATGTATTTCCCTCCCTATACTTCTTTCATTTTTATTCAAGCTATATTTGGGAGAAAAAAATGCTATATGTTGGCATCCTTTTTCTGTACTTACTGGTGCATGTTAATTTTTGCAAGCGTGATCTTTTTCTTGGTCTATCTGCTTAAACATCTGATAACAGGAGTTTAGTGATCCCCGTGATGCTGATGATGCAAGATATAGTTTAAATGGGAGGGATGTTCATGGAAGTCGTATCATTGTGGAAATAGCTAAAGGGGTATGTATCATAATCTTTCCTGACAAAAGCCTTTCATAAACTGTTCAATTTCTTTCAGACAGTTGCCTCTGCTTTTCCAGTCTAGTTATCATTTTTATCTTTTAAGTGGTTAACTATGTCTCCCGTCTATGGTGGATTCATATCTTTTATGTGATTTTGAATTATTATTTTGGTACTTGGAACTTGGAAGATATCATTCATCATGTTCGTGTTCAATTTTACTCTTTTCATTGTCACATTTGTTCATTTTTATAAAGGCTTTGTGTAGTTTTCCTGGCTTGTGCAGGTAAGTTAAAGCTTGTTCATATCTTTTATATTCATTTGTGAACTTTTTTTTTTGAATGTAATGAAAATTTACAATTTTGATTTAGGTACCGCGCGGTCCTGGTGGATCTCGTGAATATCTCGGTCGAGGCCCTCCTGGAACTGGCCGTTGTTTCAATTGTGGGATTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGAGACTGGAAAAATAAATGTTATCGATGTGGCGAAAGGGGTCACATAGAGAAGAATTGCCAGAACAGTCCTAAGAAATTGAAGTATGTCATCTTTTCAATTGTTTTTTATCTTCCCTTTTAATTTTTCCCTGTTGATCATTCTGAAAAATGAAATTGTATGGCACAGGCGTGGAAGTTACTCACGTTCACCAAGCCCTCGCCGTGGTAGAAGCCGCAGTCGTAGTTACAGCAGAGGTCGTAGCTACAGGTCTGTTTCAATTGAACCATCTTCATTTAGTCTGGTTGAAGTTTTCATCTTTCTCGAGTTTGTTGATTATGTATTGAACTTAAGGCTTGTAACTTCCTGAGCATTTGTGTATTGTGTCCACAGCCGATCTAGATCGCCCGTAAAAAGAGAGAGAAGCCTCGAACGATCAGATAAAAGATCAAGGAGCCCAAGAGGCAGACCAAGCCCAAAGAGGCACAGTTTGTCGCCTCCTCCTTCAAAAGCTATGAAACGTAGCCCCACTCCTGATGAGAGGAGTCCCGAAGAAGCAAGACGTAGTCTCTCCCCTGGAAATCGCGACAGTCCTAGAGGCAGAAGCAGAAGCAGAAGCCCAAGAGGAAGGAGCAGGAGTCCAATGGATGAAGGTGAGGACTTCAGTGGTGGTGGTGGAAGTAGAAATTACCGAAGGGAAGAAAATGGCTACAGTCGCAGCCCCAGTCCGTTGCCTAGAGAAGAAAGGAGTCCTGTAAACGACGAAGATAACAACGGTTCTCCAAGGGGCGGCAGTGAGTCTGCATAATAGACAGTTCCTTATTTTGCTTCTGCTTAAACACATGAGTTTGCGTTGGAATTTTATAAGCGACTTGTGCCTCAAGAGAGACTTTTAAAATAGATCTGTATTGTGATTGAATCCCGCCTCAAATGTTCATCAGCACCGTATTTTGTCCATTTATCTCCCAGCTTAATTATGATAAATTATATATAATAATCCGTTTCTTATTA

mRNA sequence

TTATTGTTTTCAGGTGCGCCTCGCCTCCTCCTTCGAGTTTTCTAGGTTTTCTTTCCTCGAATCCTCCGACTCCATATTCATAGCGTTTTTCTATTGAATTTTTAGCTCAATCAAGATAAAATGCCTCGATATGATGATCGTTATGGTGGTACTCGGCTCTACGTTGGGCGCCTTTCTTCACGGACGAGGTCCCGTGATCTTGATGACCTGTTCAGTCGTTATGGAAGTTATGCCGTATGTTCTTCCTATTGTCCCGGTTTTTCTATTGCTAACATCCTTGTCAGAGTTTCTTGGCTTATGCCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAGTTCATCTATGAGGGGCGAGGTGTCAACCCTTTGATACTTGTATCAAATGATGGCCTTACCTGTTTCTGGAACCAATTTGCGCAGAGTACGCGATGTGGATATGAAGCGAGACTATGCATTTGTTGAGTTTAGTGATCCCCGTGATGCTGATGATGCAAGATATAGTTTAAATGGGAGGGATGTTCATGGAAGTCGTATCATTGTGGAAATAGCTAAAGGGGTACCGCGCGGTCCTGGTGGATCTCGTGAATATCTCGGTCGAGGCCCTCCTGGAACTGGCCGTTGTTTCAATTGTGGGATTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGAGACTGGAAAAATAAATGTTATCGATGTGGCGAAAGGGGTCACATAGAGAAGAATTGCCAGAACAGTCCTAAGAAATTGAAGCGTGGAAGTTACTCACGTTCACCAAGCCCTCGCCGTGGTAGAAGCCGCAGTCGTAGTTACAGCAGAGGTCGTAGCTACAGCCGATCTAGATCGCCCGTAAAAAGAGAGAGAAGCCTCGAACGATCAGATAAAAGATCAAGGAGCCCAAGAGGCAGACCAAGCCCAAAGAGGCACAGTTTGTCGCCTCCTCCTTCAAAAGCTATGAAACGTAGCCCCACTCCTGATGAGAGGAGTCCCGAAGAAGCAAGACGTAGTCTCTCCCCTGGAAATCGCGACAGTCCTAGAGGCAGAAGCAGAAGCAGAAGCCCAAGAGGAAGGAGCAGGAGTCCAATGGATGAAGGTGAGGACTTCAGTGGTGGTGGTGGAAGTAGAAATTACCGAAGGGAAGAAAATGGCTACAGTCGCAGCCCCAGTCCGTTGCCTAGAGAAGAAAGGAGTCCTGTAAACGACGAAGATAACAACGGTTCTCCAAGGGGCGGCAGTGAGTCTGCATAATAGACAGTTCCTTATTTTGCTTCTGCTTAAACACATGAGTTTGCGTTGGAATTTTATAAGCGACTTGTGCCTCAAGAGAGACTTTTAAAATAGATCTGTATTGTGATTGAATCCCGCCTCAAATGTTCATCAGCACCGTATTTTGTCCATTTATCTCCCAGCTTAATTATGATAAATTATATATAATAATCCGTTTCTTATTA

Coding sequence (CDS)

ATGCCTCGATATGATGATCGTTATGGTGGTACTCGGCTCTACGTTGGGCGCCTTTCTTCACGGACGAGGTCCCGTGATCTTGATGACCTGTTCAGTCGTTATGGAAGTTATGCCGTATGTTCTTCCTATTGTCCCGGTTTTTCTATTGCTAACATCCTTGTCAGAGTTTCTTGGCTTATGCCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGGATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATCTCAGAATGGTGTTTAGTTCATCTATGA

Protein sequence

MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLMPNLEVYGERVPLVDLASLSIMLLPVFMEMPRISEWCLVHL

Homology

[Close]

BLAST of ClCG02G013680 vs. Swiss-Prot
Match: RSZ32_ARATH (Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-11
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 36
          MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYG
Sbjct: 1  MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYG 35

[Close]

BLAST of ClCG02G013680 vs. Swiss-Prot
Match: RSZ33_ARATH (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-11
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 36
          MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYG
Sbjct: 1  MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYG 35

[Close]

BLAST of ClCG02G013680 vs. TrEMBL
Match: A0A0B0P3T6_GOSAR (Serine/arginine-rich splicing factor 4 OS=Gossypium arboreum GN=F383_06650 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22
Identity = 68/122 (55.74%), Postives = 77/122 (63.11%), Query Frame = 1


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYC---------------- 60
           MPRYDDR GGTRLYVG LSSRTRSRDL+D+FSRYG + V  +                  
Sbjct: 1   MPRYDDRRGGTRLYVGHLSSRTRSRDLEDMFSRYGRFRVGENRVLVLVLDIWSFLYEREC 60

Query: 61  ---PGFSIANI--LVRVSWLMPNLEVYGERVPLVDLASLSIMLLPVFMEMPRISEWC-LV 101
              P   + N+  LV   WL+PNLEVYGERV LVDLA LSI+LL VF EM  IS+   LV
Sbjct: 61  CDPPRVCVVNLNDLVEGCWLLPNLEVYGERVTLVDLACLSIVLLRVFSEMATISKVVFLV 120

[Close]

BLAST of ClCG02G013680 vs. TrEMBL
Match: M1HAA2_MAIZE (Arginine/serine-rich splicing factor RS2Z35 transcript II OS=Zea mays GN=RS2Z35 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLM 60
          MPRYDDR+G TRLYVGRL+ RTRSRDL+ LFS+YG ++V                     
Sbjct: 1  MPRYDDRHGNTRLYVGRLAPRTRSRDLEYLFSKYGRFSV-------------------FY 60

Query: 61 PNLEVYGERVPLVDLASLSIMLLPVFME 89
          P +EV G RVPLV+L    + ++P+F+E
Sbjct: 61 PTMEVCGGRVPLVEL----VAIVPIFVE 65

[Close]

BLAST of ClCG02G013680 vs. TrEMBL
Match: A0A096RJL7_MAIZE (Uncharacterized protein OS=Zea mays GN=umc1511 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLM 60
           MPRYDDR+G TRLYVGRL+ RTRSRDL+ LFS+YG ++V                     
Sbjct: 44  MPRYDDRHGNTRLYVGRLAPRTRSRDLEYLFSKYGRFSV-------------------FY 103

Query: 61  PNLEVYGERVPLVDLASLSIMLLPVFME 89
           P +EV G RVPLV+L    + ++P+F+E
Sbjct: 104 PTMEVCGGRVPLVEL----VAIVPIFVE 108

[Close]

BLAST of ClCG02G013680 vs. TrEMBL
Match: M1H520_MAIZE (Arginine/serine-rich splicing factor RS2Z35 transcript III OS=Zea mays GN=RS2Z35 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLM 60
          MPRYDDR+G TRLYVGRL+ RTRSRDL+ LFS+YG ++V                     
Sbjct: 1  MPRYDDRHGNTRLYVGRLAPRTRSRDLEYLFSKYGRFSV-------------------FY 60

Query: 61 PNLEVYGERVPLVDLASLSIMLLPVFME 89
          P +EV G RVPLV+L    + ++P+F+E
Sbjct: 61 PTMEVCGGRVPLVEL----VAIVPIFVE 65

[Close]

BLAST of ClCG02G013680 vs. TrEMBL
Match: A0A0A0KS31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177110 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 36
          MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG
Sbjct: 63 MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 97

[Close]

BLAST of ClCG02G013680 vs. TAIR10
Match: AT2G37340.1 (AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-12
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 36
          MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYG
Sbjct: 1  MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYG 35

[Close]

BLAST of ClCG02G013680 vs. TAIR10
Match: AT3G53500.2 (AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-12
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYG 36
          MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYG
Sbjct: 1  MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYG 35

[Close]

BLAST of ClCG02G013680 vs. NCBI nr
Match: gi|728838593|gb|KHG18036.1| (Serine/arginine-rich splicing factor 4 [Gossypium arboreum])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 68/122 (55.74%), Postives = 77/122 (63.11%), Query Frame = 1


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYC---------------- 60
           MPRYDDR GGTRLYVG LSSRTRSRDL+D+FSRYG + V  +                  
Sbjct: 1   MPRYDDRRGGTRLYVGHLSSRTRSRDLEDMFSRYGRFRVGENRVLVLVLDIWSFLYEREC 60

Query: 61  ---PGFSIANI--LVRVSWLMPNLEVYGERVPLVDLASLSIMLLPVFMEMPRISEWC-LV 101
              P   + N+  LV   WL+PNLEVYGERV LVDLA LSI+LL VF EM  IS+   LV
Sbjct: 61  CDPPRVCVVNLNDLVEGCWLLPNLEVYGERVTLVDLACLSIVLLRVFSEMATISKVVFLV 120

[Close]

BLAST of ClCG02G013680 vs. NCBI nr
Match: gi|778700857|ref|XP_011654929.1| (PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS 37
          MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS
Sbjct: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS 36

[Close]

BLAST of ClCG02G013680 vs. NCBI nr
Match: gi|659090036|ref|XP_008445803.1| (PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS 37
          MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS
Sbjct: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGS 36

[Close]

BLAST of ClCG02G013680 vs. NCBI nr
Match: gi|448878190|gb|AGE46058.1| (arginine/serine-rich splicing factor RS2Z35 transcript III [Zea mays])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLM 60
          MPRYDDR+G TRLYVGRL+ RTRSRDL+ LFS+YG ++V                     
Sbjct: 1  MPRYDDRHGNTRLYVGRLAPRTRSRDLEYLFSKYGRFSV-------------------FY 60

Query: 61 PNLEVYGERVPLVDLASLSIMLLPVFME 89
          P +EV G RVPLV+L    + ++P+F+E
Sbjct: 61 PTMEVCGGRVPLVEL----VAIVPIFVE 65

[Close]

BLAST of ClCG02G013680 vs. NCBI nr
Match: gi|413942174|gb|AFW74823.1| (hypothetical protein ZEAMMB73_961242, partial [Zea mays])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGSYAVCSSYCPGFSIANILVRVSWLM 60
           MPRYDDR+G TRLYVGRL+ RTRSRDL+ LFS+YG ++V                     
Sbjct: 44  MPRYDDRHGNTRLYVGRLAPRTRSRDLEYLFSKYGRFSV-------------------FY 103

Query: 61  PNLEVYGERVPLVDLASLSIMLLPVFME 89
           P +EV G RVPLV+L    + ++P+F+E
Sbjct: 104 PTMEVCGGRVPLVEL----VAIVPIFVE 108

The following BLAST results are available for this feature:

BLAST of ClCG02G013680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSZ32_ARATH	6.0e-11	88.57	Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE...	[more]
RSZ33_ARATH	6.0e-11	88.57	Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE...	[more]

BLAST of ClCG02G013680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0P3T6_GOSAR	3.1e-22	55.74	Serine/arginine-rich splicing factor 4 OS=Gossypium arboreum GN=F383_06650 PE=4 ...	[more]
M1HAA2_MAIZE	1.1e-11	47.73	Arginine/serine-rich splicing factor RS2Z35 transcript II OS=Zea mays GN=RS2Z35 ...	[more]
A0A096RJL7_MAIZE	1.1e-11	47.73	Uncharacterized protein OS=Zea mays GN=umc1511 PE=4 SV=1	[more]
M1H520_MAIZE	1.1e-11	47.73	Arginine/serine-rich splicing factor RS2Z35 transcript III OS=Zea mays GN=RS2Z35...	[more]
A0A0A0KS31_CUCSA	2.4e-11	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177110 PE=4 SV=1	[more]

BLAST of ClCG02G013680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37340.1	3.4e-12	88.57	arginine/serine-rich zinc knuckle-containing protein 33	[more]
AT3G53500.2	3.4e-12	88.57	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]

BLAST of ClCG02G013680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728838593\|gb\|KHG18036.1\|	4.4e-22	55.74	Serine/arginine-rich splicing factor 4 [Gossypium arboreum]	[more]
gi\|778700857\|ref\|XP_011654929.1\|	1.2e-11	100.00	PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucumis ...	[more]
gi\|659090036\|ref\|XP_008445803.1\|	1.2e-11	100.00	PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucumis ...	[more]
gi\|448878190\|gb\|AGE46058.1\|	1.6e-11	47.73	arginine/serine-rich splicing factor RS2Z35 transcript III [Zea mays]	[more]
gi\|413942174\|gb\|AFW74823.1\|	1.6e-11	47.73	hypothetical protein ZEAMMB73_961242, partial [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013680.1	ClCG02G013680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 5..37 score: 3.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 7..51 score: 5.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G013680	Lsi04G008360	Bottle gourd (USVL1VR-Ls)	lsiwcgB275
ClCG02G013680	Carg26905	Silver-seed gourd	carwcgB0721
ClCG02G013680	Carg23771	Silver-seed gourd	carwcgB0838
ClCG02G013680	CsaV3_5G006510	Cucumber (Chinese Long) v3	cucwcgB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G013680	Melon (DHL92) v3.6.1	medwcgB055
ClCG02G013680	Melon (DHL92) v3.6.1	medwcgB321
ClCG02G013680	Silver-seed gourd	carwcgB0153
ClCG02G013680	Cucumber (Chinese Long) v3	cucwcgB217
ClCG02G013680	Cucumber (Chinese Long) v3	cucwcgB307
ClCG02G013680	Watermelon (97103) v2	wcgwmbB134
ClCG02G013680	Watermelon (97103) v2	wcgwmbB138
ClCG02G013680	Watermelon (97103) v2	wcgwmbB158
ClCG02G013680	Wax gourd	wcgwgoB258
ClCG02G013680	Wax gourd	wcgwgoB312
ClCG02G013680	Wax gourd	wcgwgoB319
ClCG02G013680	Watermelon (Charleston Gray)	wcgwcgB048
ClCG02G013680	Cucumber (Gy14) v1	cgywcgB290
ClCG02G013680	Cucumber (Gy14) v1	cgywcgB527
ClCG02G013680	Cucurbita maxima (Rimu)	cmawcgB641
ClCG02G013680	Cucurbita maxima (Rimu)	cmawcgB642
ClCG02G013680	Cucurbita moschata (Rifu)	cmowcgB643
ClCG02G013680	Cucurbita moschata (Rifu)	cmowcgB644
ClCG02G013680	Cucurbita moschata (Rifu)	cmowcgB740
ClCG02G013680	Wild cucumber (PI 183967)	cpiwcgB216
ClCG02G013680	Wild cucumber (PI 183967)	cpiwcgB305
ClCG02G013680	Wild cucumber (PI 183967)	cpiwcgB398
ClCG02G013680	Cucumber (Chinese Long) v2	cuwcgB214
ClCG02G013680	Cucumber (Chinese Long) v2	cuwcgB380
ClCG02G013680	Melon (DHL92) v3.5.1	mewcgB056
ClCG02G013680	Watermelon (97103) v1	wcgwmB177
ClCG02G013680	Watermelon (97103) v1	wcgwmB197
ClCG02G013680	Cucurbita pepo (Zucchini)	cpewcgB376
ClCG02G013680	Cucurbita pepo (Zucchini)	cpewcgB377
ClCG02G013680	Cucurbita pepo (Zucchini)	cpewcgB783
ClCG02G013680	Bottle gourd (USVL1VR-Ls)	lsiwcgB236
ClCG02G013680	Cucumber (Gy14) v2	cgybwcgB196
ClCG02G013680	Cucumber (Gy14) v2	cgybwcgB347