ClCG02G013600 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G013600
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 27624340 .. 27625074 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTACTTGAAATATCCAGAGGCTTAGGTACGCCTCAGAAATCTAGAGTAGAAGAAATCCTACATCATACATTCTCGTGCAATGTACGTACGCCGCGCAAATTTCCCGAGTTTCAAAAAACTAATTTAGAAGCTTATGCACTTTCCATCAATCTAGCTCAAATCCACACAACAAATTAACCTAAAAACTTCATTATTCTATAGATATGGCCGAGTAAAAAGCTATTCACGAATTTGACTGAATCAATTCTCTGAGCTTTCAATTACTCAGGCGCAAACTACACTATCTAGAAACCTAGACTAGAAGACGGCAAAGCATGTTACTTTGTCCTGGATCGACAGACCATAAAGTCGATGTTCAAAATTCAAATAGTCGGCGATATCATCATAATTTCTAAAGGAAATCTTTTGATAATCAATCAATTTACAGTTCTCTAATCATAGAAAAAAGAAACAATCAGGATTCCGAATACCGAGTTCTCTGCTTCCAAGATTAGAGCAACCACGATACGCTTCGAGAAATTGAATATGGAAAAATGGAAAAGAAAGGATTCACCTGAAACAGGCGCCGTGTTCAAAGCCATGGCAATGCTTCAAGCACTAGCTAGTGTATTGCAAAGGTGAGCAAATTAATTGTATACTGTTTATTTTTCTATTTTTTTTCTATTAATTGTATAAAGTGCTGTCCCCCTCCCCCAAAAGTGTTTGTATAATGTGTTGTGTTGCAGATGA

mRNA sequence

ATGCCTGTACTTGAAATATCCAGAGGCTTAGGTACGCCTCAGAAATCTAGAGTAGAAGAAATCCTACATCATACATTCTCGTGCAATAAAAAAGAAACAATCAGGATTCCGAATACCGAGTTCTCTGCTTCCAAGATTAGAGCAACCACGATACGCTTCGAGAAATTGAATATGGAAAAATGGAAAAGAAAGGATTCACCTGAAACAGGCGCCGTGTTCAAAGCCATGGCAATGCTTCAAGCACTAGCTAGTGTATTGCAAAGATGA

Coding sequence (CDS)

ATGCCTGTACTTGAAATATCCAGAGGCTTAGGTACGCCTCAGAAATCTAGAGTAGAAGAAATCCTACATCATACATTCTCGTGCAATAAAAAAGAAACAATCAGGATTCCGAATACCGAGTTCTCTGCTTCCAAGATTAGAGCAACCACGATACGCTTCGAGAAATTGAATATGGAAAAATGGAAAAGAAAGGATTCACCTGAAACAGGCGCCGTGTTCAAAGCCATGGCAATGCTTCAAGCACTAGCTAGTGTATTGCAAAGATGA

Protein sequence

MPVLEISRGLGTPQKSRVEEILHHTFSCNKKETIRIPNTEFSASKIRATTIRFEKLNMEKWKRKDSPETGAVFKAMAMLQALASVLQR

Homology

[Close]

BLAST of ClCG02G013600 vs. TrEMBL
Match: A0A0A0KLK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177680 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-10
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 44 SKIRATTIRFEKLNMEKWKRKDSPETGAVFKAMAMLQALASVLQ 88
          S+I ATTIR EKLN EKWKRKDSPET AVFKAM MLQALA V Q
Sbjct: 26 SQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKMLQALACVSQ 69

[Close]

BLAST of ClCG02G013600 vs. NCBI nr
Match: gi|700195323|gb|KGN50500.1| (hypothetical protein Csa_5G177680 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 44 SKIRATTIRFEKLNMEKWKRKDSPETGAVFKAMAMLQALASVLQ 88
          S+I ATTIR EKLN EKWKRKDSPET AVFKAM MLQALA V Q
Sbjct: 26 SQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKMLQALACVSQ 69

The following BLAST results are available for this feature:

BLAST of ClCG02G013600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLK2_CUCSA	9.0e-10	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177680 PE=4 SV=1	[more]

BLAST of ClCG02G013600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195323\|gb\|KGN50500.1\|	1.3e-09	81.82	hypothetical protein Csa_5G177680 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013600.1	ClCG02G013600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G013600	Csa5G177680	Cucumber (Chinese Long) v2	cuwcgB380
ClCG02G013600	CSPI05G09170	Wild cucumber (PI 183967)	cpiwcgB398
ClCG02G013600	CsaV3_5G006580	Cucumber (Chinese Long) v3	cucwcgB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G013600	Watermelon (97103) v2	wcgwmbB134
ClCG02G013600	Watermelon (97103) v2	wcgwmbB138
ClCG02G013600	Watermelon (97103) v2	wcgwmbB158
ClCG02G013600	Wax gourd	wcgwgoB258
ClCG02G013600	Wax gourd	wcgwgoB312
ClCG02G013600	Wax gourd	wcgwgoB319
ClCG02G013600	Watermelon (Charleston Gray)	wcgwcgB048
ClCG02G013600	Cucumber (Gy14) v1	cgywcgB290
ClCG02G013600	Cucumber (Gy14) v1	cgywcgB527
ClCG02G013600	Cucurbita maxima (Rimu)	cmawcgB641
ClCG02G013600	Cucurbita maxima (Rimu)	cmawcgB642
ClCG02G013600	Cucurbita moschata (Rifu)	cmowcgB643
ClCG02G013600	Cucurbita moschata (Rifu)	cmowcgB644
ClCG02G013600	Wild cucumber (PI 183967)	cpiwcgB216
ClCG02G013600	Wild cucumber (PI 183967)	cpiwcgB305
ClCG02G013600	Melon (DHL92) v3.5.1	mewcgB056
ClCG02G013600	Watermelon (97103) v1	wcgwmB177
ClCG02G013600	Watermelon (97103) v1	wcgwmB197
ClCG02G013600	Cucurbita pepo (Zucchini)	cpewcgB376
ClCG02G013600	Cucurbita pepo (Zucchini)	cpewcgB377
ClCG02G013600	Bottle gourd (USVL1VR-Ls)	lsiwcgB236
ClCG02G013600	Bottle gourd (USVL1VR-Ls)	lsiwcgB275
ClCG02G013600	Cucumber (Gy14) v2	cgybwcgB196
ClCG02G013600	Cucumber (Gy14) v2	cgybwcgB347
ClCG02G013600	Melon (DHL92) v3.6.1	medwcgB055
ClCG02G013600	Melon (DHL92) v3.6.1	medwcgB321
ClCG02G013600	Silver-seed gourd	carwcgB0721
ClCG02G013600	Silver-seed gourd	carwcgB0838
ClCG02G013600	Cucumber (Chinese Long) v3	cucwcgB217
ClCG02G013600	Cucumber (Chinese Long) v3	cucwcgB307