ClCG02G013160 (gene) Watermelon (Charleston Gray)

NameClCG02G013160
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Descriptionhypothetical protein chrM:11918-12241 FORWARD LENGTH=107
LocationCG_Chr02 : 26940409 .. 26942333 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAGGAACTCCCCAATCAACAAGTGAACATCTCTTTGCCTGGCCAACGAGATATCAAACTCCTGAAGGAGATCATTCTAGACAAAACTTGCAAACTAACACTCAGGTAAACTCGGTCAAGCGGCTTGCTGGTTTTTCCATCATCCAATCCACAACAAATCGAATGAAACCTGGCGAAAAAGAAGTGAACACTTTTCTAAGGAAGGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTTGCTGCTACTAACGGGGTCTCAGTTGATTTCCCTTCCTTTAGGTACTCAGATGTTTTAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAAACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTTGCCTCTTCAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTAGTGACGGTACACGGAACACCAACCCAATCTCGACGCAAAAAAAAGAATTGCAACTACATCAAAAACTGAGATTCATCGACGTGAATGCACGCTTTGTCATGTTAGTGTGAGAACCTTAAATAAACTCACGATCAAGCTTTTTGATTTGTTTACTCAACTCGTAAAGGCAAACAAAAAAGGGATCCGCCTCGAACCAAAACTCTTTCTCCTTAGCACAAGCACTAAGTAAGCAAGCTACCTTTCTTTTCTACGCTACGATCTTTCTTCTCTTATGAAATTCAAAGAAGGTGATCGAAGTTTTCCTTTGCCTTTCGACAAAGCATACAACAAAGGCCCATTAACGAGAGCATCTCCTCTACTTCAATCTAAGACCTCATACTTCTGTATTTTCTCTCTCTTCTTTCATACTCTCCTAGCATTTAAAAACTACATATGAAAATCAACATTTTTTACAAAAAGAAAAAAAAATACACACCTTTTAGCATTTGTGACCGTTTTTCTTTCTCCCCCTTAATTCGGCTACTCTTGTGCCATAAAAAGTCATTTTTGTTGTAGTGATGTTTGGATAATTTCTTTTCTTAAAAAAAAAAACTTAATTGAGAATCTAATTTGATTCAAAAGTTTAGGGGTTTAGTTGATAAAATTATAAGCCTCACACGATGTTTATATCCAAACAAAATAAAATGAATGGTGCAAATTGATACACTTACAATAGTTTAGATAAATTAATACAATTATTTGTATTTGTATGATTCAAATTGATATAACTCCAAAATTTAATGTTGTAAATTGATATTTTCTATAAAATTTAGGTTGAAAAAAGGTTGATATAAATAATGAGTAAAGAAGCATAAAGTTAAAAAACAGTAAACTAAAAACAGAATCATTATTTTTGTATGAAGAAAAGGAGGAGACGAAAATATTTTATTCGTTTTACACGAGTGGGCTTAGTGTTGTGGTTAAATAATACAGCTCATAATTCCACTACCTCAAACTTTTTGGTTGCACAGTTTTTTTGAAAACCAAAATCGAGAAACATGAAAGTACTTATTAAAAGCCTCATCAAATTTGGACTCATTGAAGCACGTGATTTCACAGACAGACAGAAACAGTAAGTCAACCCTTATTCCTCTAAAGATCAATTCATATTTAAAGTGCTCTCACTTCTCTTCTATATAAAAGCTATCAAACTGAAGAGCTTCTCCATCTACTTAATTATAACATTTATTACATGGGTTTGTGGTATATTCCATCTCTTGCACACTGGACAGCCACCGCCGTGGGTGGCTGCCGCCAGCCGTAGGGAGGTGGCTGGTGTGGATGAGATGGAATACGCCATTGAACCCATGTGCTTCCGGGAGAAAAACATTAAGACAATGCAAAAACAGGGGCACAAAGGTCTTGGTTATGGATGTCTTCCTCTAAAGAAAGGTTAA

mRNA sequence

ATGGGGGAGGAACTCCCCAATCAACAAGTGAACATCTCTTTGCCTGGCCAACGAGATATCAAACTCCTGAAGGAGATCATTCTAGACAAAACTTGCAAACTAACACTCAGAAGTGAACACTTTTCTAAGGAAGGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTTGCTGCTACTAACGGGGTCTCATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAAACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTTGCCTCTTCAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTAGTGACGGTACACGGAACACCAACCCAATCTCGACGCAAAAAAAAGAATTGCAACTACATCAAAAACTGAGATTCATCGACGTGAATGCACGCTTTGTCATGTTACCACCGCCGTGGGTGGCTGCCGCCAGCCGTAGGGAGGTGGCTGGTGTGGATGAGATGGAATACGCCATTGAACCCATGTGCTTCCGGGAGAAAAACATTAAGACAATGCAAAAACAGGGGCACAAAGGTCTTGGTTATGGATGTCTTCCTCTAAAGAAAGGTTAA

Coding sequence (CDS)

ATGGGGGAGGAACTCCCCAATCAACAAGTGAACATCTCTTTGCCTGGCCAACGAGATATCAAACTCCTGAAGGAGATCATTCTAGACAAAACTTGCAAACTAACACTCAGAAGTGAACACTTTTCTAAGGAAGGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTTGCTGCTACTAACGGGGTCTCATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAAACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTTGCCTCTTCAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTAGTGACGGTACACGGAACACCAACCCAATCTCGACGCAAAAAAAAGAATTGCAACTACATCAAAAACTGAGATTCATCGACGTGAATGCACGCTTTGTCATGTTACCACCGCCGTGGGTGGCTGCCGCCAGCCGTAGGGAGGTGGCTGGTGTGGATGAGATGGAATACGCCATTGAACCCATGTGCTTCCGGGAGAAAAACATTAAGACAATGCAAAAACAGGGGCACAAAGGTCTTGGTTATGGATGTCTTCCTCTAAAGAAAGGTTAA

Protein sequence

MGEELPNQQVNISLPGQRDIKLLKEIILDKTCKLTLRSEHFSKEGSFVFVFLQTPNPLSLAATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCSDGTRNTNPISTQKKELQLHQKLRFIDVNARFVMLPPPWVAAASRREVAGVDEMEYAIEPMCFREKNIKTMQKQGHKGLGYGCLPLKKG
BLAST of ClCG02G013160 vs. Swiss-Prot
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-31
Identity = 61/69 (88.41%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 68  FAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCSD 127
           FAKF KSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHSFRSC+ 
Sbjct: 4   FAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCTQ 63

Query: 128 GTRNTNPIS 137
           GT NT  IS
Sbjct: 64  GTLNTTKIS 72

BLAST of ClCG02G013160 vs. TrEMBL
Match: M1BRB5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019855 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-31
Identity = 82/156 (52.56%), Postives = 97/156 (62.18%), Query Frame = 1

Query: 15  PGQRDIKLLKEIILDKTCKLTLRSEHFSKEGSFVFVFLQTP----NPLSLA--------A 74
           PG++++  L   + ++  +L        +E SFVFVFLQTP    +PL           A
Sbjct: 3   PGEKEVNTL---LRNEVARLK------GEERSFVFVFLQTPIRSRSPLLTGSRLISLPLA 62

Query: 75  TNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSF 134
           T    FAKFEKSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHSF
Sbjct: 63  TKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 122

Query: 135 RSCS----------DGTRNTNPISTQKKELQLHQKL 149
           RSC+              +  P   +KKE Q+H  L
Sbjct: 123 RSCTLCRLAKHRLDKRYTSHQPNLDEKKEKQVHPGL 149

BLAST of ClCG02G013160 vs. TrEMBL
Match: K4D065_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-30
Identity = 81/154 (52.60%), Postives = 95/154 (61.69%), Query Frame = 1

Query: 15  PGQRDIKLLKEIILDKTCKLTLRSEHFSKEGSFVFVFLQTP-------------NPLSLA 74
           PG++++  L   + ++  +L        +E SFVFVFLQTP             N L LA
Sbjct: 3   PGEKEVNTL---LRNEVARLK------GEERSFVFVFLQTPIRSRSPLLTGSQLNSLPLA 62

Query: 75  ATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHS 134
            T    FAKFEKSKER+LATELGYGF IGDPWITDGISPWPFAS SVLPSQCPGIHPMHS
Sbjct: 63  -TKMFQFAKFEKSKERRLATELGYGFVIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 122

Query: 135 FRSCS----------DGTRNTNPISTQKKELQLH 146
           FRSC+              +  P   +KKE Q+H
Sbjct: 123 FRSCTLCKLAKHRLDKRYTSHQPNLDEKKEKQVH 146

BLAST of ClCG02G013160 vs. TrEMBL
Match: K7N1A6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 68/105 (64.76%), Postives = 72/105 (68.57%), Query Frame = 1

Query: 37  RSEHFSKEGSFVF--------VFLQTPNPLSLAATNGVSFAKFEKSKERKLATELGYGFP 96
           RSEHF+ E   +          F   PNPLSLAATNG        SKER+LA ELGYGFP
Sbjct: 23  RSEHFAAEEFIILERETKLRVCFSSNPNPLSLAATNG--------SKERRLAAELGYGFP 82

Query: 97  IGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCSDGTRNTN 134
           IGDPWITDGISPWPFAS SVLPSQCPGIHPMHSFRSC+      N
Sbjct: 83  IGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCTQTNECAN 119

BLAST of ClCG02G013160 vs. TrEMBL
Match: Q5M9R1_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf138c PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-27
Identity = 64/94 (68.09%), Postives = 68/94 (72.34%), Query Frame = 1

Query: 62  ATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHS 121
           AT    FAKFEKSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHS
Sbjct: 44  ATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 103

Query: 122 FRSCS----------DGTRNTNPISTQKKELQLH 146
           FRSC+                 P   +KKE Q+H
Sbjct: 104 FRSCTLCRLAKHRRHKRYTEHQPNLDEKKEKQVH 137

BLAST of ClCG02G013160 vs. TrEMBL
Match: A0A161X3X2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024277 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 62  ATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHS 121
           AT    FAKFEKSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHS
Sbjct: 44  ATQMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 103

Query: 122 FRSCS 127
           FRSC+
Sbjct: 104 FRSCT 108

BLAST of ClCG02G013160 vs. TAIR10
Match: ATMG00030.1 (ATMG00030.1 hypothetical protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-32
Identity = 61/69 (88.41%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 68  FAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCSD 127
           FAKF KSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHSFRSC+ 
Sbjct: 4   FAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCTQ 63

Query: 128 GTRNTNPIS 137
           GT NT  IS
Sbjct: 64  GTLNTTKIS 72

BLAST of ClCG02G013160 vs. NCBI nr
Match: gi|13449292|ref|NP_085475.1| (hypothetical protein ArthMp003 [Arabidopsis thaliana])

HSP 1 Score: 136.0 bits (341), Expect = 7.9e-29
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1

Query: 68  FAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCSD 127
           FAKF KSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHSFRSC+ 
Sbjct: 4   FAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCTQ 63

Query: 128 GTRNTNPIS 137
           GT NT  IS
Sbjct: 64  GTLNTTKIS 72

BLAST of ClCG02G013160 vs. NCBI nr
Match: gi|57013900|ref|YP_173374.1| (hypothetical protein NitaMp027 [Nicotiana tabacum])

HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27
Identity = 64/94 (68.09%), Postives = 68/94 (72.34%), Query Frame = 1

Query: 62  ATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHS 121
           AT    FAKFEKSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHS
Sbjct: 44  ATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 103

Query: 122 FRSCS----------DGTRNTNPISTQKKELQLH 146
           FRSC+                 P   +KKE Q+H
Sbjct: 104 FRSCTLCRLAKHRRHKRYTEHQPNLDEKKEKQVH 137

BLAST of ClCG02G013160 vs. NCBI nr
Match: gi|1021021973|gb|KZM80319.1| (hypothetical protein DCAR_031801 [Daucus carota subsp. sativus])

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-27
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 62  ATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHS 121
           AT    FAKFEKSKER+LATELGYGFPIGDPWITDGISPWPFAS SVLPSQCPGIHPMHS
Sbjct: 44  ATQMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHS 103

Query: 122 FRSCS 127
           FRSC+
Sbjct: 104 FRSCT 108

BLAST of ClCG02G013160 vs. NCBI nr
Match: gi|302143234|emb|CBI20529.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1

Query: 68  FAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPSQCPGIHPMHSFRSCS 127
           FAKFEKSKER+LATELGYGF IGDPWITDGISPWPFAS SVLPSQCPGIHPMHSFRSC+
Sbjct: 4   FAKFEKSKERRLATELGYGFLIGDPWITDGISPWPFASQSVLPSQCPGIHPMHSFRSCT 62

BLAST of ClCG02G013160 vs. NCBI nr
Match: gi|734393345|gb|KHN28130.1| (Putative mitochondrial protein [Glycine soja])

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1

Query: 52  LQTPNPLSLAATNGVSFAKFEKSKERKLATELGYGFPIGDPWITDGISPWPFASSSVLPS 111
           L T +P  L  T    + +  KSKER+LA +LGYGFPIGDPWITDGISPWPFAS +VLPS
Sbjct: 314 LATSHPRILPHT----WVRSSKSKERRLAADLGYGFPIGDPWITDGISPWPFASENVLPS 373

Query: 112 QCPGIHPMHSFRSCSDGTRNTN 134
           QCP IHPMHSFRSC+      N
Sbjct: 374 QCPDIHPMHSFRSCTQTNECAN 391

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M030_ARATH5.0e-3188.41Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg0... [more]
Match NameE-valueIdentityDescription
M1BRB5_SOLTU5.9e-3152.56Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019855 PE=4 SV=1[more]
K4D065_SOLLC6.5e-3052.60Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K7N1A6_SOYBN1.2e-2864.76Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
Q5M9R1_TOBAC4.0e-2768.09Uncharacterized protein OS=Nicotiana tabacum GN=orf138c PE=4 SV=1[more]
A0A161X3X2_DAUCA5.2e-2789.23Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024277 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00030.12.8e-3288.41ATMG00030.1 hypothetical protein[more]
Match NameE-valueIdentityDescription
gi|13449292|ref|NP_085475.1|7.9e-2988.41hypothetical protein ArthMp003 [Arabidopsis thaliana][more]
gi|57013900|ref|YP_173374.1|5.7e-2768.09hypothetical protein NitaMp027 [Nicotiana tabacum][more]
gi|1021021973|gb|KZM80319.1|7.4e-2789.23hypothetical protein DCAR_031801 [Daucus carota subsp. sativus][more]
gi|302143234|emb|CBI20529.3|4.1e-2593.22unnamed protein product [Vitis vinifera][more]
gi|734393345|gb|KHN28130.1|1.2e-2164.63Putative mitochondrial protein [Glycine soja][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G013160.1ClCG02G013160.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37773FAMILY NOT NAMEDcoord: 62..170
score: 2.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None