ClCG02G011590 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G011590
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Nucleoporin NUP188-like protein
Location	CG_Chr02 : 24456164 .. 24457492 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAACGAAACTCTCAACGCATCAGGATTTTTGCAAAAGGAAATTCCTTCCAATTATATTAATCCGGCTGTCTATTATCTTTTCCTATTGAATGAGCACTCAACAATGTCTTCTTTGATTGCTTTTATGCCAGTTCTTGTTGGTTCAAATTGTTTGCAATTTTTGGTATTCAAGGAGTTTTTGATAACTCTTCAAAGGCAACATTCAACAGCTTTTGATTGGTCCCCCGATTTTTTGAAAAGTGACAAAACTTGTCATTGATGTAATGAAAAGAGATTAGTGCTAAAAGAGATACAAGCTCCAAAAGGGATAGAACTAAAACGATTAAAATGATAAAAAACAACAAACAACAAATGACCATACAATAATAGATGAAAATAGAACTCCAAGAAGCATAATGAAAGCTCTCCCATTAAGACGAGTCTCCGGTTTAGAAAAACCCTTGGAGCAATTTGGATAAAGAACACCATAATGAACCCTTCAAACGAGCTACTTGAAATCAATTGAAAATTCTTTGATTTCTATCCCACCACAAATTTGATAATATAGCTTTAACCCCATTAACCCAAAGCAACTTAGCTTTGGAATTTATAACTTGTAAGAGGGCCATAAAAAAGTTGAAAGGTGTTGCTTTTCTGGCTCTTACGGGAAGAAAGATCTTTGAGGATAAGTCAGTTATAGAGGATTTCTTTTGGGTTAATAAATAGTACATATGTTCTCGGTGGTGGCATTCAAACCACAAGAACCTTCTTATTCTTCTTCTTTCTTTTATTATTATTATTTTTTTTGGAAATTAGTCCTTGTAGCTCTCGTTGGATGAGTTTCTCTTATCTCGGCCCTTAGGTTGCTCTTTTTTGATCATTACAAGTTCTTGTTCTTGTAAAATTAAATTGTTATAGAGTTCTGTTGTGTAATGTTAAGAGTCCAATCTCTAAATGCTGTGTTTCGTCAATACACTTCTTTTTATCTGGCTTTATCTGTATTGCAGATGGAGGACACCACCTTCTGCTCAATTTTGGATATTCTTTGCAATATCTACCGTGGGGAGGTCTGGATGTATAATGATCAGCAATTGTGATCATTCTGTAGTTTTAGCTTCTTGTTCTGGTTACATCATTTGCTGATAATTTTCTGTCTGTATTTTGGTGCTCTTGAAAATTGCAGGAGTCACTTTGCATTCAGTTCTGGGACAAAGAGAGTTTCACTGATGGTCCTATTCGGTGTCTACTTTATGACCTAGAAGGTGAATTCCCTTTCAGGCTCGTGGAATTTGTTCGTTTTTTATCATCTCTGTGTGAAGGAGCTTGGCCAGCAAAATGCGTGTAA

mRNA sequence

ATGCTTAACGAAACTCTCAACGCATCAGGATTTTTGCAAAAGGAAATTCCTTCCAATTATATTAATCCGGCTGTCTATTATCTTTTCCTATTGAATGAGCACTCAACAATGTCTTCTTTGATTGCTTTTATGCCAGTTCTTGTTGGTTCAAATTGTTTGCAATTTTTGATGGAGGACACCACCTTCTGCTCAATTTTGGATATTCTTTGCAATATCTACCGTGGGGAGGAGTCACTTTGCATTCAGTTCTGGGACAAAGAGAGTTTCACTGATGGTCCTATTCGGTGTCTACTTTATGACCTAGAAGGTGAATTCCCTTTCAGGCTCGTGGAATTTGTTCGTTTTTTATCATCTCTGTGTGAAGGAGCTTGGCCAGCAAAATGCGTGTAA

Coding sequence (CDS)

ATGCTTAACGAAACTCTCAACGCATCAGGATTTTTGCAAAAGGAAATTCCTTCCAATTATATTAATCCGGCTGTCTATTATCTTTTCCTATTGAATGAGCACTCAACAATGTCTTCTTTGATTGCTTTTATGCCAGTTCTTGTTGGTTCAAATTGTTTGCAATTTTTGATGGAGGACACCACCTTCTGCTCAATTTTGGATATTCTTTGCAATATCTACCGTGGGGAGGAGTCACTTTGCATTCAGTTCTGGGACAAAGAGAGTTTCACTGATGGTCCTATTCGGTGTCTACTTTATGACCTAGAAGGTGAATTCCCTTTCAGGCTCGTGGAATTTGTTCGTTTTTTATCATCTCTGTGTGAAGGAGCTTGGCCAGCAAAATGCGTGTAA

Protein sequence

MLNETLNASGFLQKEIPSNYINPAVYYLFLLNEHSTMSSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV

Homology

[Close]

BLAST of ClCG02G011590 vs. TrEMBL
Match: A0A0A0LM91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263970 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 57  MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 116
           MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL
Sbjct: 1   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 60

Query: 117 SSLCEGAWPAKCV 130
           SSLCEGAWPAKCV
Sbjct: 61  SSLCEGAWPAKCV 73

[Close]

BLAST of ClCG02G011590 vs. TrEMBL
Match: E5GC17_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 57  MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 116
           MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL
Sbjct: 1   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 60

Query: 117 SSLCEGAWPAKCV 130
           SSLCEGAWPAKCV
Sbjct: 61  SSLCEGAWPAKCV 73

[Close]

BLAST of ClCG02G011590 vs. TrEMBL
Match: B9HRA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13260g PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  +   +ED+T   ILDILC IYRGEESLCIQFWDKESF DGPIRCL
Sbjct: 273 SVLRTFISAFIASYEINLQLEDSTLSLILDILCKIYRGEESLCIQFWDKESFIDGPIRCL 332

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           L +LEG FPFR  EFVR LS+LCEG+WPA+CV
Sbjct: 333 LCNLEGVFPFRTAEFVRLLSALCEGSWPAECV 364

[Close]

BLAST of ClCG02G011590 vs. TrEMBL
Match: A0A067EGH7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0002312mg PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  + + +ED T   ILDILCNIYRGEESLCIQFWD+ESF DGPIRC 
Sbjct: 245 SVLRTFISAFIASYEINYQLEDGTLNLILDILCNIYRGEESLCIQFWDRESFVDGPIRCF 304

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           L +L GEFPFR +E VRFLS+LCEG WPA+CV
Sbjct: 305 LSNLGGEFPFRTLELVRFLSALCEGRWPAECV 336

[Close]

BLAST of ClCG02G011590 vs. TrEMBL
Match: V4SII2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027667mg PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  + + +ED T   ILDILCNIYRGEESLCIQFWD+ESF DGPIRC 
Sbjct: 392 SVLRTFISAFIASYEINYQLEDGTLNLILDILCNIYRGEESLCIQFWDRESFVDGPIRCF 451

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           L +L GEFPFR +E VRFLS+LCEG WPA+CV
Sbjct: 452 LSNLGGEFPFRTLELVRFLSALCEGRWPAECV 483

[Close]

BLAST of ClCG02G011590 vs. TAIR10
Match: AT4G38760.1 (AT4G38760.1 Protein of unknown function (DUF3414))

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-27
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 43  FMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLE 102
           F+   + S  +   +ED T   ILDIL  +Y+GEESLC QFWD++SF DGPIRCLL+DLE
Sbjct: 397 FISAFIASYEINLQLEDGTLELILDILSKVYQGEESLCCQFWDRKSFVDGPIRCLLFDLE 456

Query: 103 GEFPFRLVEFVRFLSSLCEGAWPAKCV 130
            EFPFR  EF+R LSSL EG+WPA+CV
Sbjct: 457 SEFPFRSAEFIRLLSSLSEGSWPAECV 483

[Close]

BLAST of ClCG02G011590 vs. NCBI nr
Match: gi|778669647|ref|XP_011649284.1| (PREDICTED: uncharacterized protein LOC101204633 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 77/92 (83.70%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  +   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL
Sbjct: 391 SVLRTFISAFIASYEINLQMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 450

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV
Sbjct: 451 LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 482

[Close]

BLAST of ClCG02G011590 vs. NCBI nr
Match: gi|659116180|ref|XP_008457947.1| (PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 77/92 (83.70%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  +   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL
Sbjct: 391 SVLRTFISAFIASYEINLQMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 450

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV
Sbjct: 451 LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 482

[Close]

BLAST of ClCG02G011590 vs. NCBI nr
Match: gi|700206783|gb|KGN61902.1| (hypothetical protein Csa_2G263970 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 57  MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 116
           MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL
Sbjct: 1   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 60

Query: 117 SSLCEGAWPAKCV 130
           SSLCEGAWPAKCV
Sbjct: 61  SSLCEGAWPAKCV 73

[Close]

BLAST of ClCG02G011590 vs. NCBI nr
Match: gi|307136174|gb|ADN34015.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 57  MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 116
           MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL
Sbjct: 1   MEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCLLYDLEGEFPFRLVEFVRFL 60

Query: 117 SSLCEGAWPAKCV 130
           SSLCEGAWPAKCV
Sbjct: 61  SSLCEGAWPAKCV 73

[Close]

BLAST of ClCG02G011590 vs. NCBI nr
Match: gi|743793283|ref|XP_011046730.1| (PREDICTED: uncharacterized protein LOC105141252 isoform X1 [Populus euphratica])

HSP 1 Score: 131.7 bits (330), Expect = 9.0e-28
Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 38  SSLIAFMPVLVGSNCLQFLMEDTTFCSILDILCNIYRGEESLCIQFWDKESFTDGPIRCL 97
           S L  F+   + S  +   +ED+T   ILDILCNIYRGEESLCIQFWDKESF DGPIRCL
Sbjct: 391 SVLRTFISSFIASYEINLQLEDSTLSLILDILCNIYRGEESLCIQFWDKESFIDGPIRCL 450

Query: 98  LYDLEGEFPFRLVEFVRFLSSLCEGAWPAKCV 130
           L +LEG FPFR  EFVR LS+LCEG+WPA+CV
Sbjct: 451 LCNLEGLFPFRTAEFVRLLSALCEGSWPAECV 482

The following BLAST results are available for this feature:

BLAST of ClCG02G011590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM91_CUCSA	1.7e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263970 PE=4 SV=1	[more]
E5GC17_CUCME	1.7e-36	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9HRA5_POPTR	1.4e-27	66.30	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13260g PE=4 SV=2	[more]
A0A067EGH7_CITSI	3.1e-27	65.22	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0002312mg PE=4 ...	[more]
V4SII2_9ROSI	3.1e-27	65.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027667mg PE=4 SV=1	[more]

BLAST of ClCG02G011590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38760.1	4.8e-27	60.92	Protein of unknown function (DUF3414)	[more]

BLAST of ClCG02G011590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669647\|ref\|XP_011649284.1\|	1.6e-37	83.70	PREDICTED: uncharacterized protein LOC101204633 [Cucumis sativus]	[more]
gi\|659116180\|ref\|XP_008457947.1\|	1.6e-37	83.70	PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo]	[more]
gi\|700206783\|gb\|KGN61902.1\|	2.4e-36	100.00	hypothetical protein Csa_2G263970 [Cucumis sativus]	[more]
gi\|307136174\|gb\|ADN34015.1\|	2.4e-36	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|743793283\|ref\|XP_011046730.1\|	9.0e-28	67.39	PREDICTED: uncharacterized protein LOC105141252 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011590.1	ClCG02G011590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31431	FAMILY NOT NAMED	coord: 65..129 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G011590	Csa2G263970	Cucumber (Chinese Long) v2	cuwcgB119
ClCG02G011590	MELO3C020788	Melon (DHL92) v3.5.1	mewcgB106
ClCG02G011590	CSPI02G13200	Wild cucumber (PI 183967)	cpiwcgB125
ClCG02G011590	Cucsa.169160	Cucumber (Gy14) v1	cgywcgB303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G011590	Silver-seed gourd	carwcgB0309
ClCG02G011590	Silver-seed gourd	carwcgB0339
ClCG02G011590	Silver-seed gourd	carwcgB0829
ClCG02G011590	Silver-seed gourd	carwcgB0995
ClCG02G011590	Cucumber (Chinese Long) v3	cucwcgB134
ClCG02G011590	Cucumber (Chinese Long) v3	cucwcgB565
ClCG02G011590	Watermelon (97103) v2	wcgwmbB138
ClCG02G011590	Watermelon (97103) v2	wcgwmbB145
ClCG02G011590	Wax gourd	wcgwgoB279
ClCG02G011590	Wax gourd	wcgwgoB302
ClCG02G011590	Watermelon (Charleston Gray)	wcgwcgB118
ClCG02G011590	Cucurbita maxima (Rimu)	cmawcgB104
ClCG02G011590	Cucurbita maxima (Rimu)	cmawcgB459
ClCG02G011590	Cucurbita maxima (Rimu)	cmawcgB490
ClCG02G011590	Cucurbita maxima (Rimu)	cmawcgB551
ClCG02G011590	Cucurbita moschata (Rifu)	cmowcgB092
ClCG02G011590	Cucurbita moschata (Rifu)	cmowcgB458
ClCG02G011590	Cucurbita moschata (Rifu)	cmowcgB492
ClCG02G011590	Cucurbita moschata (Rifu)	cmowcgB546
ClCG02G011590	Wild cucumber (PI 183967)	cpiwcgB568
ClCG02G011590	Cucumber (Chinese Long) v2	cuwcgB540
ClCG02G011590	Melon (DHL92) v3.5.1	mewcgB201
ClCG02G011590	Watermelon (97103) v1	wcgwmB197
ClCG02G011590	Watermelon (97103) v1	wcgwmB209
ClCG02G011590	Cucurbita pepo (Zucchini)	cpewcgB231
ClCG02G011590	Cucurbita pepo (Zucchini)	cpewcgB256
ClCG02G011590	Cucurbita pepo (Zucchini)	cpewcgB594
ClCG02G011590	Cucurbita pepo (Zucchini)	cpewcgB654
ClCG02G011590	Bottle gourd (USVL1VR-Ls)	lsiwcgB045
ClCG02G011590	Bottle gourd (USVL1VR-Ls)	lsiwcgB091
ClCG02G011590	Bottle gourd (USVL1VR-Ls)	lsiwcgB102
ClCG02G011590	Cucumber (Gy14) v2	cgybwcgB115
ClCG02G011590	Cucumber (Gy14) v2	cgybwcgB500
ClCG02G011590	Melon (DHL92) v3.6.1	medwcgB102
ClCG02G011590	Melon (DHL92) v3.6.1	medwcgB196