ClCG02G011250 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G011250
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Photosystem II reaction center protein L
Location	CG_Chr02 : 23360779 .. 23361182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCATTATTTTTTTTCCTTGATTTTCTTTCCCAATTTGCAATGAAAATTTTTCCCAATTTCATATACCTTTTGGCAATCTCAAAACTAAAAATATAATCTCTTTAAAAAAAATTCAACAAAAATGAAGCTATCATGATTTTTTTTTTCGATAAAACTTATCCTATTTTTACAGTGCGATAGTTGGCTGTTCACGGATTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

mRNA sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Coding sequence (CDS)

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Protein sequence

MWGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Homology

[Close]

BLAST of ClCG02G011250 vs. Swiss-Prot
Match: PSBL_PELHO (Photosystem II reaction center protein L OS=Pelargonium hortorum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-15
Identity = 38/38 (100.00%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. Swiss-Prot
Match: PSBL_BRADI (Photosystem II reaction center protein L OS=Brachypodium distachyon GN=psbL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-15
Identity = 38/38 (100.00%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. Swiss-Prot
Match: PSBL_CUSJA (Photosystem II reaction center protein L OS=Cuscuta japonica GN=psbL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-15
Identity = 38/38 (100.00%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. Swiss-Prot
Match: PSBL_BUTUM (Photosystem II reaction center protein L OS=Butomus umbellatus GN=psbL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-15
Identity = 38/38 (100.00%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. Swiss-Prot
Match: PSBL_ARAHI (Photosystem II reaction center protein L OS=Arabis hirsuta GN=psbL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-15
Identity = 38/38 (100.00%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. TrEMBL
Match: I3T8I7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-25
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          W QYQQC+SSNDKPNPNYRAMTQSNPNEQ+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 15 WDQYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 72

[Close]

BLAST of ClCG02G011250 vs. TrEMBL
Match: A0A139ZMC9_9SOLA (Photosystem II protein L OS=Dunalia spinosa GN=psbL PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-24
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          W QYQQC+SSNDK NPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WDQYQQCSSSNDKLNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of ClCG02G011250 vs. TrEMBL
Match: A0A0V0HJS1_SOLCH (Cytochrome b559 subunit alpha OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 4   QYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
           QYQQC+SSNDK NPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 118 QYQQCSSSNDKLNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 173

[Close]

BLAST of ClCG02G011250 vs. TrEMBL
Match: G7JFY7_MEDTR (Cytochrome b559 subunit alpha OS=Medicago truncatula GN=MTR_4g050850 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.9e-22
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 4   QYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
           ++ QC+SSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 81  RWLQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 136

[Close]

BLAST of ClCG02G011250 vs. TrEMBL
Match: S8D3G3_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00484 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.4e-16
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1


Query: 17 PNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          PNYR MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 28 PNYRTMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 70

[Close]

BLAST of ClCG02G011250 vs. TAIR10
Match: ATCG00560.1 (ATCG00560.1 photosystem II reaction center protein L)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-15
Identity = 37/38 (97.37%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQ+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of ClCG02G011250 vs. NCBI nr
Match: gi|388521535|gb|AFK48829.1| (unknown [Lotus japonicus])

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-25
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          W QYQQC+SSNDKPNPNYRAMTQSNPNEQ+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 15 WDQYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 72

[Close]

BLAST of ClCG02G011250 vs. NCBI nr
Match: gi|765368289|gb|AJR32914.1| (photosystem II protein L (chloroplast) [Dunalia spinosa])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          W QYQQC+SSNDK NPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WDQYQQCSSSNDKLNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of ClCG02G011250 vs. NCBI nr
Match: gi|357471461|ref|XP_003606015.1| (cytochrome b559 subunit alpha [Medicago truncatula])

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-22
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 4   QYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
           ++ QC+SSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 81  RWLQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 136

[Close]

BLAST of ClCG02G011250 vs. NCBI nr
Match: gi|527209597|gb|EPS74274.1| (hypothetical protein M569_00484, partial [Genlisea aurea])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1


Query: 17 PNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          PNYR MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 28 PNYRTMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 70

[Close]

BLAST of ClCG02G011250 vs. NCBI nr
Match: gi|938340365|ref|YP_009172292.1| (photosystem II protein L (chloroplast) [Colobanthus quitensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1


Query: 18 NYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          NYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 2  NYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 43

The following BLAST results are available for this feature:

BLAST of ClCG02G011250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBL_PELHO	5.2e-15	100.00	Photosystem II reaction center protein L OS=Pelargonium hortorum GN=psbL PE=3 SV...	[more]
PSBL_BRADI	5.2e-15	100.00	Photosystem II reaction center protein L OS=Brachypodium distachyon GN=psbL PE=3...	[more]
PSBL_CUSJA	5.2e-15	100.00	Photosystem II reaction center protein L OS=Cuscuta japonica GN=psbL PE=3 SV=1	[more]
PSBL_BUTUM	5.2e-15	100.00	Photosystem II reaction center protein L OS=Butomus umbellatus GN=psbL PE=3 SV=1	[more]
PSBL_ARAHI	5.2e-15	100.00	Photosystem II reaction center protein L OS=Arabis hirsuta GN=psbL PE=3 SV=1	[more]

BLAST of ClCG02G011250 vs. TrEMBL


Match Name	E-value	Identity	Description
I3T8I7_LOTJA	5.1e-25	94.83	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A139ZMC9_9SOLA	9.6e-24	93.10	Photosystem II protein L OS=Dunalia spinosa GN=psbL PE=3 SV=1	[more]
A0A0V0HJS1_SOLCH	2.8e-23	96.43	Cytochrome b559 subunit alpha OS=Solanum chacoense PE=3 SV=1	[more]
G7JFY7_MEDTR	6.9e-22	91.07	Cytochrome b559 subunit alpha OS=Medicago truncatula GN=MTR_4g050850 PE=3 SV=1	[more]
S8D3G3_9LAMI	7.4e-16	97.67	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00484 PE=3 SV=1	[more]

BLAST of ClCG02G011250 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00560.1	1.1e-15	97.37	ATCG00560.1 photosystem II reaction center protein L	[more]

BLAST of ClCG02G011250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|388521535\|gb\|AFK48829.1\|	7.3e-25	94.83	unknown [Lotus japonicus]	[more]
gi\|765368289\|gb\|AJR32914.1\|	1.4e-23	93.10	photosystem II protein L (chloroplast) [Dunalia spinosa]	[more]
gi\|357471461\|ref\|XP_003606015.1\|	9.9e-22	91.07	cytochrome b559 subunit alpha [Medicago truncatula]	[more]
gi\|527209597\|gb\|EPS74274.1\|	1.1e-15	97.67	hypothetical protein M569_00484, partial [Genlisea aurea]	[more]
gi\|938340365\|ref\|YP_009172292.1\|	1.2e-14	97.62	photosystem II protein L (chloroplast) [Colobanthus quitensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003372	PSII_PsbL

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009539	photosystem II reaction center
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0042170	plastid membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011250.1	ClCG02G011250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003372	Photosystem II PsbL	PRODOM	PD005113		coord: 23..59 score: 7.0
IPR003372	Photosystem II PsbL	HAMAP	MF_01317	PSII_PsbL	coord: 14..59 score: 16
IPR003372	Photosystem II PsbL	PFAM	PF02419	PsbL	coord: 24..59 score: 3.1
None	No IPR available	PANTHER	PTHR33391	FAMILY NOT NAMED	coord: 6..59 score: 6.3
None	No IPR available	PANTHER	PTHR33391:SF5	PHOTOSYSTEM II REACTION CENTER PROTEIN L	coord: 6..59 score: 6.3
None	No IPR available	unknown	SSF161017	Photosystem II reaction center protein L, PsbL	coord: 23..59 score: 2.62

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G011250	Cucurbita maxima (Rimu)	cmawcgB487
ClCG02G011250	Cucurbita maxima (Rimu)	cmawcgB553
ClCG02G011250	Cucurbita moschata (Rifu)	cmowcgB498
ClCG02G011250	Cucurbita moschata (Rifu)	cmowcgB548
ClCG02G011250	Wild cucumber (PI 183967)	cpiwcgB477
ClCG02G011250	Watermelon (97103) v1	wcgwmB197
ClCG02G011250	Watermelon (97103) v1	wcgwmB200
ClCG02G011250	Cucurbita pepo (Zucchini)	cpewcgB264
ClCG02G011250	Cucurbita pepo (Zucchini)	cpewcgB656
ClCG02G011250	Bottle gourd (USVL1VR-Ls)	lsiwcgB049
ClCG02G011250	Bottle gourd (USVL1VR-Ls)	lsiwcgB102
ClCG02G011250	Cucumber (Gy14) v2	cgybwcgB419
ClCG02G011250	Silver-seed gourd	carwcgB0030
ClCG02G011250	Cucumber (Chinese Long) v3	cucwcgB475
ClCG02G011250	Watermelon (97103) v2	wcgwmbB138
ClCG02G011250	Wax gourd	wcgwgoB290
ClCG02G011250	Cucumber (Gy14) v1	cgywcgB182