ClCG02G011240 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G011240
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPhotosystem II reaction center protein J
LocationCG_Chr02 : 23357793 .. 23358219 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAAATAAAAGAAAATACTAAATAATAGTACGAATTATCTTATCCCATTCGGAAGGATATCATCTCATAATTATCTATGACTGTTTCTGTCTCTAGCACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTGTAA

mRNA sequence

GGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCACACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTGTAA

Coding sequence (CDS)

GGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCACACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTGTAA

Protein sequence

GQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Homology
[Close]
BLAST of ClCG02G011240 vs. Swiss-Prot
Match: PSBJ_CUCSA (Photosystem II reaction center protein J OS=Cucumis sativus GN=psbJ PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-15
Identity = 39/40 (97.50%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MAETTGRIPLW+IGTVTGIPVIGLVGIFFYGSYSGLGSSL
Sbjct: 1  MAETTGRIPLWLIGTVTGIPVIGLVGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. Swiss-Prot
Match: PSBJ_POPTR (Photosystem II reaction center protein J OS=Populus trichocarpa GN=psbJ PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-15
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Sbjct: 1  MADTTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. Swiss-Prot
Match: PSBJ_CITSI (Photosystem II reaction center protein J OS=Citrus sinensis GN=psbJ PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-15
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Sbjct: 1  MADTTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. Swiss-Prot
Match: PSBJ_GOSHI (Photosystem II reaction center protein J OS=Gossypium hirsutum GN=psbJ PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-15
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Sbjct: 1  MADTTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. Swiss-Prot
Match: PSBJ_POPAL (Photosystem II reaction center protein J OS=Populus alba GN=psbJ PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-15
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Sbjct: 1  MADTTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. TrEMBL
Match: I1J2J8_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g39212 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGIPVIGLVG+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIPVIGLVGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. TrEMBL
Match: M0ZEZ6_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum GN=psbJ PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTV GIPVIGLVG+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVAGIPVIGLVGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. TrEMBL
Match: Q0JH63_ORYSJ (Os01g0881600 protein OS=Oryza sativa subsp. japonica GN=Os01g0881600 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGI VIGL+G+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIAVIGLIGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. TrEMBL
Match: A0A0Q3LWY9_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g27335 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.5e-14
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGIPVI LVG FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIPVIDLVGAFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. TrEMBL
Match: K3Z2V1_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_020869mg PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.5e-14
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGI VIGL+G+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGILVIGLIGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. TAIR10
Match: ATCG00550.1 (ATCG00550.1 photosystem II reaction center protein J)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MA+TTGRIPLW+IGTV GI VIGL+GIFFYGSYSGLGSSL
Sbjct: 1  MADTTGRIPLWVIGTVAGILVIGLIGIFFYGSYSGLGSSL 40

[Close]
BLAST of ClCG02G011240 vs. NCBI nr
Match: gi|944049304|gb|KQJ84945.1| (hypothetical protein BRADI_5g23874 [Brachypodium distachyon])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGIPVIGLVG+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIPVIGLVGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. NCBI nr
Match: gi|113534532|dbj|BAF06915.1| (Os01g0881600 [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGI VIGL+G+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIAVIGLIGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. NCBI nr
Match: gi|944061247|gb|KQJ96837.1| (hypothetical protein BRADI_3g27335 [Brachypodium distachyon])

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGIPVI LVG FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGIPVIDLVGAFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. NCBI nr
Match: gi|944221235|gb|KQK85688.1| (hypothetical protein SETIT_020869mg [Setaria italica])

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 42 MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          M R+VG+MA+TTGRIPLW+IGTVTGI VIGL+G+FFYGSYSGLGSSL
Sbjct: 1  MWRKVGEMADTTGRIPLWLIGTVTGILVIGLIGVFFYGSYSGLGSSL 47

[Close]
BLAST of ClCG02G011240 vs. NCBI nr
Match: gi|346578205|ref|YP_004841797.1| (photosystem II protein J [Cucumis melo subsp. melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

Query: 49 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 89
          MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Sbjct: 1  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 40

The following BLAST results are available for this feature:
BLAST of ClCG02G011240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBJ_CUCSA1.6e-1597.50Photosystem II reaction center protein J OS=Cucumis sativus GN=psbJ PE=3 SV=1[more]
PSBJ_POPTR2.7e-1595.00Photosystem II reaction center protein J OS=Populus trichocarpa GN=psbJ PE=3 SV=... [more]
PSBJ_CITSI2.7e-1595.00Photosystem II reaction center protein J OS=Citrus sinensis GN=psbJ PE=3 SV=1[more]
PSBJ_GOSHI2.7e-1595.00Photosystem II reaction center protein J OS=Gossypium hirsutum GN=psbJ PE=3 SV=1[more]
PSBJ_POPAL2.7e-1595.00Photosystem II reaction center protein J OS=Populus alba GN=psbJ PE=3 SV=1[more]
BLAST of ClCG02G011240 vs. TrEMBL
Match NameE-valueIdentityDescription
I1J2J8_BRADI1.9e-1587.23Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g39212 PE=3 SV=1[more]
M0ZEZ6_HORVD7.1e-1585.11Uncharacterized protein OS=Hordeum vulgare var. distichum GN=psbJ PE=3 SV=1[more]
Q0JH63_ORYSJ2.1e-1482.98Os01g0881600 protein OS=Oryza sativa subsp. japonica GN=Os01g0881600 PE=3 SV=1[more]
A0A0Q3LWY9_BRADI3.5e-1485.11Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g27335 PE=3 SV=1[more]
K3Z2V1_SETIT3.5e-1482.98Uncharacterized protein OS=Setaria italica GN=SETIT_020869mg PE=3 SV=1[more]
BLAST of ClCG02G011240 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00550.11.1e-1487.50ATCG00550.1 photosystem II reaction center protein J[more]
BLAST of ClCG02G011240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944049304|gb|KQJ84945.1|2.7e-1587.23hypothetical protein BRADI_5g23874 [Brachypodium distachyon][more]
gi|113534532|dbj|BAF06915.1|3.0e-1482.98Os01g0881600 [Oryza sativa Japonica Group][more]
gi|944061247|gb|KQJ96837.1|5.1e-1485.11hypothetical protein BRADI_3g27335 [Brachypodium distachyon][more]
gi|944221235|gb|KQK85688.1|5.1e-1482.98hypothetical protein SETIT_020869mg [Setaria italica][more]
gi|346578205|ref|YP_004841797.1|1.5e-13100.00photosystem II protein J [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002682PSII_PsbJ
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009539photosystem II reaction center
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G011240.1ClCG02G011240.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002682Photosystem II PsbJHAMAPMF_01305PSII_PsbJcoord: 50..88
score: 15
IPR002682Photosystem II PsbJPFAMPF01788PsbJcoord: 49..88
score: 1.2
NoneNo IPR availablePANTHERPTHR34812FAMILY NOT NAMEDcoord: 50..88
score: 8.0
NoneNo IPR availablePANTHERPTHR34812:SF2PHOTOSYSTEM II REACTION CENTER PROTEIN Jcoord: 50..88
score: 8.0
NoneNo IPR availableunknownSSF161021Photosystem II reaction center protein J, PsbJcoord: 55..88
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G011240Watermelon (97103) v1wcgwmB197
ClCG02G011240Watermelon (97103) v1wcgwmB200
ClCG02G011240Cucurbita pepo (Zucchini)cpewcgB264
ClCG02G011240Cucurbita pepo (Zucchini)cpewcgB656
ClCG02G011240Bottle gourd (USVL1VR-Ls)lsiwcgB049
ClCG02G011240Bottle gourd (USVL1VR-Ls)lsiwcgB102
ClCG02G011240Cucumber (Gy14) v2cgybwcgB419
ClCG02G011240Silver-seed gourdcarwcgB0030
ClCG02G011240Cucumber (Chinese Long) v3cucwcgB475
ClCG02G011240Watermelon (97103) v2wcgwmbB138
ClCG02G011240Wax gourdwcgwgoB290
ClCG02G011240Cucumber (Gy14) v1cgywcgB182
ClCG02G011240Cucurbita maxima (Rimu)cmawcgB487
ClCG02G011240Cucurbita maxima (Rimu)cmawcgB553
ClCG02G011240Cucurbita moschata (Rifu)cmowcgB498
ClCG02G011240Cucurbita moschata (Rifu)cmowcgB548
ClCG02G011240Wild cucumber (PI 183967)cpiwcgB477