ClCG02G011190 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G011190
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L2, chloroplastic
LocationCG_Chr02 : 23144760 .. 23152168 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAACAATAACTGTAGACACCGTATTTTGTTCGGCCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTNTCCAATCTTCAATATCAAATTTCTTCCAAAATAAAATACCATGCGTTAACGCTTTATCATCTATGCGTCAACCTGACTATGTTCCACAGATACATCTAACTTTTAACTAATTCCCAACTATGCCTTCAATTCTTCATTCTCACTCTTAGTGAAATATCCATTCTTTTCCTAATACTATGCGTTCAACTAGTCTTCTTATCGCATAGTGATACTTCCTAAACTTAGTTGACACACTCAAAAGATTTCCTAAGTCCTTAGATCACCTTGCCATTCAAAATCACTTAACATAATTCTTTCCAAACTTCTTAACGCCTTCTTCTTAAACCAAAACTTCAGCTTACAATTCACTCTTTTTCCTTCCATTCATCTCAATGCATAGAATTCCTTGGCCAATAATTCTGCAATTCCGCAAACATAACTTTTCAACCTTAAGAATTTCCTAACTCCACATACTTATAATCTTAGCTCCACTTCTTGTCTTTCTTTTCTTACTAGCCATCATAAGTACCTAGGTTCTGAGATAGGGTATTACACCTTATTGCCGAAGCACTTTAAACCTTGTATTCATTCTTTCTTTTTCTTCTCTTAATCTTGTTTACAAATCATCTTCTGCGCATACAATCTCCATTGAAGTAATCTTCAAATGAGCATTTCAGTTTCCTCGACAACTTCTTTTAGTCTACACCATCAATCCTTGGCTAACAACCAAACAAACACTCACAACTGGTATCAGAGCCATTGAGAGAATTACCAAGAAGCAGTTTCTTGAATCAAAGAATGGCAACAACAATAACTGTAGACACCGTATTTTGTTCGGCCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTATTTTGGATAACATATATTTTAGATTAGTCTTTTTATAAAAAAAAATGGGTTTAGAAACAAAGTTTTTCCTTAAGTTTTTGAAACTTTTAAAAAGATGTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAATGAAAAAAATATTACTTTTCTTCCCTTTTCCCATTCTTCCTCTTTTCCCCATTTCTCTACTTCTCTTCCTTTTCTTCCCCAATTCTCTCCTCTTCTTCATACTTCCTCTATTTCCTCTCTTCCCCATTTCAAATTCCTTACAAAGCTCAACTCTCAACCTTAACACTCCCCTATAAATTGATGGGGATTCACAATGGAAAAAAGGGGGAGAAAACACAAAATGTGGAAGAGTCATTATACACATTGAGGGAGAAATAGACAGGAAGGAATAACTGAGAAAGAGATGATCCCGTAAAAACCTCATTTTCATTAGATGGATCATGCACAATTCCAACGAAACTCACACAAAACCCACTAATACAATGCAGCCCGACAACGTCTTAAACAAACAGGAATTTCCGACGAAGCCCACGAACGGACGACTCCGACAACAAACCTCACACCAACAGTGTTTTAGTGGTGGATATCTTGCATGCTTGCAACTTGGGATGATTTCTTACCTACAGTAAAAGAAAATAAAAGGAGAGAAGTGAAAAAAGAAGTGAAGGAAGAAGAAGAAGTACTTGGACAAGAAAGAAGAAAAGTAAATAAGAAAAAAAAAAAAAAAGATAAAGGTGATGAGTTCCACCCACATTTTTCTCTCTTTATTTGTTGATAATTTATTGGCATTAACTTAATTTTTGAACAAATTCAAAATATGTTTCAATTAATTTATTCTTAAAGACTCCATTGATCTTTTAAAGTAAATTCTAACTTTATTTCCAATTTAAACTTGATTTCTCCTTAATTTGATTCTTCTCATTAGTAGGATTTCAAATCTTCATTTTGTTTTAATCTTCGATTTATGATACAAAATGGATCTCGTTCTATCGTTGATTAGAGATTTCTCTATGAACAATACGAATCGAAGTTTAAAAAAGAGGAAGGAGAAGGAGTCCTCGACCCGCAATAGATAGAGGAGGATTTATTCAATCACATTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTACCTAGAGCAATAGGTGTTGTAGAGAAACTGATTGCAAAAGAGGGGAAATCGGCCACACTAAAATTACCTTCTGGGGAGGTCTGTTTGATATCCAAGAATTGCTCAGCAACAGTCGAACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTCATGTCTTCATCCATAGGGTCCCAAGTACCCGAATTAATCAAAAGTTCGATTCTATCTGAACTACTCATTTTCAAATGGTATCCACATTGGTCACAAATATTCCATTTTGATTTCAACAATTTCTTATATTTTAATCCATAACAATTTTCGCATTGAACCCACAAATGCTTGTATTTTTTAGTCACATCTAGATCGTTAGAACTTTCTGTTCTAGTTAAATCACTTCCATCCGTGCTAGTTCTTATATTGGAACTCTCACTTTCACTACTATTTCCACTTTCACCACAAATATAACTATAAATGTAATTGTCACTGTAATTGTGACTACCACTTAAAATGTAACTATCAATAGAGATTTGAGCCCGAAGATAACTGTCAATGCAACTATTAATGTGATTGTTCCAACTATATTTAGTATCATACATGTAACGATCATAGTGGGAATCATCACTCTTAGATACATTATTTTGTTTAGGAAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGACAAAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGCCAAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGATGCCGAGTGGAAGGGTCGTTGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCGATAAGCACTTGAAAAGTGCTTTATATTCTCTCAAATTAAGGGAGTTTTATGTTAGATTTCACTTGTTTGCTAGTGATTTTCAGGTTAAAACGAGGAAAATTAGAAGAAACAACTAAAAGATCAAAACCGAGCAAGAATACGGCGAAAAAGAGCTGAAAAACTCAAAAGAACAAATTTTGGGATAGCAATACGGCGCTGAGACGGCGCTGCCGTGGCACTGAAGCATAAATGCATCCTTGTTGAACGCATGGCAGCATCGCGGCGCTGAGACGGCGCTGTCGTGGCACTGAAGTATAATCGCAACAGTTTGGACGCATAGTAACATCGCGGCGCCGGGATGTCGCTGCCTCGACGCATCCTTGTTGAACGCATCCTTGGTAAACGCATGACAGCGTCGCGGCGCTTGGACGGCGCTGCCACAGCGCTAAAACCCGAGAGCAAACTTTTTAGGGTTGAAACGCTAGCGTCGCGGCGCCAGCATTACCTAAATGAAAAATTTGTATTTTAGGTTAAATTTTTGGGCGGTCAAACTCTATAAATTTGGGGGGTTTTCAGCAGCCAAGAGGGGGAAAAAATCAAGAAAAAGCAAGAAAGTTGCAGACCTAAAAAGAGATACAAAAAGGAGAGAATTAAGCAAGAGTTCAAAGAGTGAGTTAGTTGCAAGGAAGAGGAAAAGAGTTCGAGATAGTCTTGGTGCCTTTCGAAGTCCGACGTGAGAGCCAAGGAGTTCGTGACGGTTCTGCCTCAATCAAGAACCTCTTTTCAGTAGAGTTTCCCTTTTCTTTACACTCTTCCTTTGATTATTTTTACTCAAACATGTTGCTTCAAGCTATGAGTGGCTAAACTCTTTAGTTTTAGGGTATTTTATGAATTCATAGTAATTTTGTAGACTCATGGTTTTATTTAAATAATTATGCTTTTCATTATTATTGTGTTTAATTCTTGTGGATTGGCCATCTTCACATGTTAGATTAGATGTATGATTGAGAGATTGTATGTTTAACTTGATCTATAACAATGAATTAATTATTGTTAATCTATCACGAGAGTAGTTAGGTTGACAATAAAAGTTGCTAAAACTATTTTTAATGTCATGTAATTTTGTATTGGTTTTAAGAGATTAATAATCAATCGAGTTGCATGAGAAAGGGTTGTTTTTGAGAGAAAATAACTTGGAATTAAGTTTCTAGACTTAGGCATATGAATTACAATAAAATCCATGAAATCTATAGTATTGCATGATGAAATAAACAAGGATTCATTACCCTAGAACTCTCTTTGACTTTTGTGTTTCTCCCTTTGATACTTTCCTTGTTCGATTTTTCTTTTTCCCTAATTTAAAATATTGAATTTCAATCCTCAAATAAAATTGATTCAATTCTAGAATAGCTAAGTAATTTTAACCTTCCCAATTGGATCTCCAGTGGAACGATACTCGGACTTAACCGTTTTATATTATAACTTGACCCGTATACTTGCGGTTAACACTCAAAGTGCACATCACTTTCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATAAAATTAATTTAATAAAATTCAATTTAATTATAATATATTGAATTAATATTAATTTAATTATAATATATTAAATCGTATTTAATATATATAATTAAATAAAATTAATTAATTAACAAATAATTAATTAATAAATTAAATATCACATATTTAATTTAATTTGAATCATATTCAAATAACCTTCTCTCACATAATCTAGATTCATATTAATTTTTACCCTATAGTTTTTACATAAATCTCATAAATATAATTAATATTTAAATCTCATTTAAATATTTATCTCTCTCATAACCTAAAATATAAATTTTGAATCTCATTCAAAATATAACTTTATATTATAATGTATCTATATATTAATTGTATCATGTACAATTAATTCCCTTATTAATTTGAGCAATTCAAATTAATCCAACATAGTTGATTCTCATTCAAACTCTCAATGAACTAGCACGGGGACCTTATGAACTTATAGATTAGAAGCTGCAATGATATGAGATTAATTAATTAAATTAATCAATATTCATTAACTGTAAGTCACTCCACTAAAGACTTACAACTGTATTTTTCGCATTAGAGATATATTTCTATGTCCATAGATATAACCAATCAATAGTAAGTCGACCCTTCACAAATTGCTCGTTAGCCTTGTAGTTACATCTAACTCCCTAAGTATGGTTGATCCCTGTAATAAATAAACAGTTTATAGTCCAACTATAAACTAACCCCTCTCGGGCCAGTTAGAGTGTGAGGCCTCTTTGTTCAAAATCCGGAATCATTCCTTCAGAGAGCAATTTATCTACTTACCTTAAAGATGAGAAGAAGTGAATTTCATCTTGTGAAGATATGTTCCCAGCTCCCTACGCAGACAAATCCCCAAAATGGAAGGCATACTGAGTCGACAATTTGGCCACTCTCGCCCATATCAAAGGATTGTTCTCATAGACAAGAGTTCATAACTCACTCAGAATTAAGGTCGAGTCACCTATGGTCATCCTAAGAAACGTTAATTTCTTTAATTAACAGTGTTACAAGGAGAAACTACACATTTCACGGTCCGGTCTTATACAAACTCTTTGCATAGGATATGAACGATTAAGATTAAATTGTTTGTAGCACTTTACAACTCTTGTAACAATTAAAAGTGGGTCCGTATCCGTAGTGTTACTAGGATAAGGCACCCAACCTTATCCCTATACTATAGACTGTTTTGGTTATTTTTTAAACATCATCCAACCTTGTATGTCAACCATATACATGTTTAATTTTATATTAAATGACCATGGATCTTAGTTTATTGAATTGAGTTAATGCAAAAAACAAATAAAATAACTACTTATTTTAGTGAATAAATAAAATGTTTTTACAATTTTAAAAACTACGAGATTTAGGACACCAATCCCAACATATTTTTGTTTGGAAACTTTTTTGTTATATATATATATATATATATATATATATATATAGTTGTTTTCAAATATAGAAAAATGAACCAAAATATTTACAAATATAGCAAAATTCCACTATCTGTCTACGATACGACTACTATTTGTGTCTATCATGACACATATAGACAAAGATAATAGTCTATTGCGGTCTATCACGATCTATCGCAGATAGACGATGATATTTTGCTATTATTTGTAAATATTTTCAGCAATTTTGTCATTTAAAATAATTTTCCATATATATATTAATAAACTATAAATTGCACTTAATTTTAGTGTTTTTTAAGCACACATGTGTTGTTGGGAGTTTTAGAAATGGGGTTTAGGGTTTACTTTTGGATAATGCATTTCAATTTTTTTTTTTTAATTTAAGCAATTTTACAAATTTGTGCATGTGATGTTTCTAGTCAAGTCATTTTTATTTGAACACTTTTGATAAAAACTTTTTCAAATAAAAACACTCATGTGTGTCTGACAATTTTTTCTCAAAAATGTTTTTACACACAAGTTTGTTTGATTTCTTACATGATAAATCTGATTTTATTAATATTAAATTACTATAAAGAACGACTATGAAATACTATGAACTAATAACCAAAAACAGGGAATTCAACGTTTTGATGATACTTACGTACTTTTGTGTCGCAAATGTATTTTTATCGACAATTTTGTGTGTCAACCTAAATATAAACATTTATTGATGTTATATATGTATTTTTAAATTAATAGTTATTTTTAAACTTTAAATTAAGGTTTTATTGGATGTTTATGTCATGAGGGTCAACCAAACAAAGAACTCATGTGTCAACAAAACTCAAATTTGTAGTAGTCACAATTTAAAATAATGATCATCGAAATTGGTGGAGTGGTCGTAGTTGGAGGTCGTCGAAGTTAGTTGTCAACAGTATTGATTATATGTTGCTAGGAGTTTGTCGTAGGCAGTGGTTGCCGGAGTTAGCTGTAGGAGGTGGCCACCCAAGTTGGTCGCTGGAAATGAGCAACGAGGCATTGGTGCTTATGAGAGCTATGTGCACTGTTGTAGACATGGTATAAAATATGGGTGACATATTGACATTCCAAACAATGAGTTGAGTTCATATTTAAACAACTACTCCCCTTACCCCCAAACATATCATAAATGATTTGAATTTCTAGAGTTTGGAATATAATCCGGGGATTTGAGAAATATTTATATTTACTTGGAGAAGTTATTAGTAAGGTTTGACTAGGATTTATAAATATGGTTTAGCCAAAAAAATATATATATGTATATATATTAACCCACCTCGTAAGGCGTGCGTAGTCCCCCCTTGTTCGTCTCCTTCTTCTTCGTGAGTCTCTTCACACCGTCGACAACCAACGCCACCGGTCGCCGTTTGGCACATCGTCCGCCGTACATTCCAGCGCCCGTTTCTGTCACTGAGAAATCTGATTGA

mRNA sequence

ATGGCAACAACAATAACTGTAGACACCTTTCCTCGACAACTTCTTTTAGTCTACACCATCAATCCTTGGCTAACAACCAAACAAACACTCACAACTGGTATCAGAGCCATTGAGAGAATTACCAAGAAGCAGTTTCTTGAATCAAAGAATGGCAACAACAATAACTGTAGACACCGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTACCTAGAGCAATAGGTGTTGTAGAGAAACTGATTGCAAAAGAGGGGAAATCGGCCACACTAAAATTACCTTCTGGGGAGGTCTGTTTGATATCCAAGAATTGCTCAGCAACAGTCGAACAAGTGGAGAATGCTGGGGAAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGACAAAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGCCAAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGATGCCGAGCGTGCGTAGTCCCCCCTTGTTCGTCTCCTTCTTCTTCGTGAGTCTCTTCACACCGTCGACAACCAACGCCACCGGTCGCCGTTTGGCACATCGTCCGCCGTACATTCCAGCGCCCGTTTCTGTCACTGAGAAATCTGATTGA

Coding sequence (CDS)

ATGGCAACAACAATAACTGTAGACACCTTTCCTCGACAACTTCTTTTAGTCTACACCATCAATCCTTGGCTAACAACCAAACAAACACTCACAACTGGTATCAGAGCCATTGAGAGAATTACCAAGAAGCAGTTTCTTGAATCAAAGAATGGCAACAACAATAACTGTAGACACCGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTACCTAGAGCAATAGGTGTTGTAGAGAAACTGATTGCAAAAGAGGGGAAATCGGCCACACTAAAATTACCTTCTGGGGAGGTCTGTTTGATATCCAAGAATTGCTCAGCAACAGTCGAACAAGTGGAGAATGCTGGGGAAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGACAAAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGCCAAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGATGCCGAGCGTGCGTAGTCCCCCCTTGTTCGTCTCCTTCTTCTTCGTGAGTCTCTTCACACCGTCGACAACCAACGCCACCGGTCGCCGTTTGGCACATCGTCCGCCGTACATTCCAGCGCCCGTTTCTGTCACTGAGAAATCTGATTGA

Protein sequence

MATTITVDTFPRQLLLVYTINPWLTTKQTLTTGIRAIERITKKQFLESKNGNNNNCRHRTAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENAGETEACKGFLEPDKDWPSSAKAEGSLTARPTCQAGTKVGLSDPTMPSVRSPPLFVSFFFVSLFTPSTTNATGRRLAHRPPYIPAPVSVTEKSD
Homology
[Close]
BLAST of ClCG02G011190 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-21
Identity = 55/68 (80.88%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GVNQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 54/68 (79.41%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLG+GGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GVNQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 54/68 (79.41%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLG+GGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 138 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 197

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 198 GVNQKSLG 205

[Close]
BLAST of ClCG02G011190 vs. Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 54/68 (79.41%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GANQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 54/68 (79.41%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLG+GGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GVNQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. TrEMBL
Match: A0A0E3M7H5_9ROSI (Ribosomal protein L2 OS=Quercus spinosa GN=rpl2 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-20
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 150 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 209

Query: 120 GETEACKGFLEPD 133
           G  +  K ++EPD
Sbjct: 210 GVNQ--KSWVEPD 220

[Close]
BLAST of ClCG02G011190 vs. TrEMBL
Match: C6TGY4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 120 GETEACKGFLEPD 133
           G  +  K  +EPD
Sbjct: 197 GVNQ--KNLVEPD 207

[Close]
BLAST of ClCG02G011190 vs. TrEMBL
Match: A0A166GJT5_COFCA (Ribosomal protein L2 OS=Coffea canephora GN=rpl2 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 62/112 (55.36%), Postives = 66/112 (58.93%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 138 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 197

Query: 120 GETEACKGFLEPDKDWPSSAKAEGSLTARPT------CQAGTKVGLSDPTMP 166
           G  +   G     K W         +   P        + G  +G   PT P
Sbjct: 198 GVNQKSLG-RAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGGAPIGRKKPTTP 248

[Close]
BLAST of ClCG02G011190 vs. TrEMBL
Match: T1L7E6_TRIUA (Uncharacterized protein OS=Triticum urartu PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 43  KQFLESKNGNNNNCRHRTAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEV 102
           K+F + +   + +    TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV
Sbjct: 11  KRFDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEV 70

Query: 103 CLISKNCSATVEQVENAGETEACKG 128
            LISKNCSATV QV N G  +   G
Sbjct: 71  RLISKNCSATVGQVGNVGVNQKSLG 95

[Close]
BLAST of ClCG02G011190 vs. TrEMBL
Match: A0A109RTD6_9ROSI (50S ribosomal protein L2, chloroplastic OS=Viola bicolor GN=rpl2 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 55/68 (80.88%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 121 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 180

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 181 GVNQKSLG 188

[Close]
BLAST of ClCG02G011190 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 53/68 (77.94%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLG+GGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GVNQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 53/68 (77.94%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLG+GGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 137 TAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 197 GVNQKSLG 204

[Close]
BLAST of ClCG02G011190 vs. NCBI nr
Match: gi|813427335|ref|YP_009132900.1| (ribosomal protein L2 (chloroplast) [Quercus spinosa])

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 150 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 209

Query: 120 GETEACKGFLEPD 133
           G  +  K ++EPD
Sbjct: 210 GVNQ--KSWVEPD 220

[Close]
BLAST of ClCG02G011190 vs. NCBI nr
Match: gi|255641628|gb|ACU21086.1| (unknown [Glycine max])

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV N 
Sbjct: 137 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNV 196

Query: 120 GETEACKGFLEPD 133
           G  +  K  +EPD
Sbjct: 197 GVNQ--KNLVEPD 207

[Close]
BLAST of ClCG02G011190 vs. NCBI nr
Match: gi|984913356|gb|AMC32108.1| (ribosomal protein L2 (chloroplast) [Viola bicolor])

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 55/68 (80.88%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 121 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 180

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 181 GVNQKSLG 188

[Close]
BLAST of ClCG02G011190 vs. NCBI nr
Match: gi|952954360|gb|ALO21724.1| (ribosomal protein L2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 55/68 (80.88%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 138 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 197

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 198 GVNQKSLG 205

[Close]
BLAST of ClCG02G011190 vs. NCBI nr
Match: gi|408902825|gb|AFU96055.1| (Rpl2, partial (chloroplast) [Rhizophora mangle])

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 55/68 (80.88%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 60  TAIHNIEITLGKGGQLPRAIGVVEKLIAKEGKSATLKLPSGEVCLISKNCSATVEQVENA 119
           TAIHNIEITLGKGGQL RA G V KLIAKEGKSATLKLPSGEV LISKNCSATV QV NA
Sbjct: 143 TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNA 202

Query: 120 GETEACKG 128
           G  +   G
Sbjct: 203 GVNQKSLG 210

The following BLAST results are available for this feature:
BLAST of ClCG02G011190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2_CUCSA3.5e-2180.8850S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1[more]
RK2B_POPAL7.9e-2179.4150S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1[more]
RK2A_POPAL7.9e-2179.4150S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1[more]
RK2_CITSI7.9e-2179.4150S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1[more]
RK2_POPTR7.9e-2179.4150S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV... [more]
BLAST of ClCG02G011190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E3M7H5_9ROSI7.9e-2078.08Ribosomal protein L2 OS=Quercus spinosa GN=rpl2 PE=4 SV=1[more]
C6TGY4_SOYBN1.0e-1978.08Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A166GJT5_COFCA2.3e-1955.36Ribosomal protein L2 OS=Coffea canephora GN=rpl2 PE=4 SV=1[more]
T1L7E6_TRIUA3.0e-1965.88Uncharacterized protein OS=Triticum urartu PE=3 SV=1[more]
A0A109RTD6_9ROSI3.9e-1980.8850S ribosomal protein L2, chloroplastic OS=Viola bicolor GN=rpl2 PE=3 SV=1[more]
BLAST of ClCG02G011190 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.11.3e-2177.94ATCG00830.1 ribosomal protein L2[more]
ATCG01310.11.3e-2177.94ATCG01310.1 ribosomal protein L2[more]
BLAST of ClCG02G011190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|813427335|ref|YP_009132900.1|1.1e-1978.08ribosomal protein L2 (chloroplast) [Quercus spinosa][more]
gi|255641628|gb|ACU21086.1|1.5e-1978.08unknown [Glycine max][more]
gi|984913356|gb|AMC32108.1|5.7e-1980.88ribosomal protein L2 (chloroplast) [Viola bicolor][more]
gi|952954360|gb|ALO21724.1|5.7e-1980.88ribosomal protein L2 (plastid) [Cucurbita argyrosperma][more]
gi|408902825|gb|AFU96055.1|5.7e-1980.88Rpl2, partial (chloroplast) [Rhizophora mangle][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR022669Ribosomal_L2_C
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G011190.1ClCG02G011190.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 60..120
score: 1.1
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 55..123
score: 1.5
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 59..115
score: 4.2
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 56..123
score: 4.9
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 48..153
score: 1.
NoneNo IPR availablePANTHERPTHR13691:SF21SUBFAMILY NOT NAMEDcoord: 60..120
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G011190Cla97C02G036960Watermelon (97103) v2wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G011190Silver-seed gourdcarwcgB0030
ClCG02G011190Cucumber (Chinese Long) v3cucwcgB469
ClCG02G011190Cucumber (Chinese Long) v3cucwcgB475
ClCG02G011190Wax gourdwcgwgoB290
ClCG02G011190Cucumber (Gy14) v1cgywcgB182
ClCG02G011190Cucurbita maxima (Rimu)cmawcgB487
ClCG02G011190Cucurbita maxima (Rimu)cmawcgB553
ClCG02G011190Cucurbita moschata (Rifu)cmowcgB498
ClCG02G011190Cucurbita moschata (Rifu)cmowcgB548
ClCG02G011190Wild cucumber (PI 183967)cpiwcgB470
ClCG02G011190Wild cucumber (PI 183967)cpiwcgB477
ClCG02G011190Cucumber (Chinese Long) v2cuwcgB449
ClCG02G011190Watermelon (97103) v1wcgwmB197
ClCG02G011190Watermelon (97103) v1wcgwmB200
ClCG02G011190Cucurbita pepo (Zucchini)cpewcgB264
ClCG02G011190Cucurbita pepo (Zucchini)cpewcgB656
ClCG02G011190Bottle gourd (USVL1VR-Ls)lsiwcgB049
ClCG02G011190Bottle gourd (USVL1VR-Ls)lsiwcgB102
ClCG02G011190Cucumber (Gy14) v2cgybwcgB419