ClCG02G011080 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G011080
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 22932178 .. 22933626 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGGAACTCCGTTTTGACCCGTTTTAGCTCGGTTTTGTTGCTAACACCCCGTTCTACCTGTTAAGTGCTCAAAACCTACAAAATAACATAATAGACACATTAAATAGCACAACGATCTCAAGTTAATCTGAGGAAGATAGCACATTTTAGGTGCTATCAATTATGTTTTTCTTTGTTATTGTGCTTAAATTCTTATTGAATGGCCATGTGTGAATGTTAGGTTAGATGTATGGTTGAAAGATTGTATGTCTAACTAGATCTATAACAAAGAATTGTTGTTAATCTCTTATGAAAATAGTTAGGTTAACAATGAAAGTTGCTAAAGACTACTCTTAATGCCATGTAATTTGTATTGGTTTCAAGAAATTAGTAATCAATTGAGTTGCATGAGAAAAGGTTGTTTTTGAGAGAAAATAACTTGGATTTATGTTTCTAGACTTAAGCATATGAATTGCAATAAAATCCATGAACACTAGAATATTGCATGATGAAGTAAATAAGGATTCATTACCCTAGAACTCTCTTTGACTCTTGTGTTTCTTATTTACTTGCTTTTCTTTTTACTTTTTTAAAATTTCAACTTAAATTTCAATCCTCAAATAAAATTGATTCAATTCTAGAATAGCTAAATAACTCAAACCTTCACAATTGGATCTTCAGTGGAACGATATTCGGACTTAACCATCTTATATTATAACTTGACCTGTACACTTGCGATTAACACGGAAAGTGAGCATCAGCTGTGCATATTGTTTTGTATTTTTCGCTTAGTAAGATAGTAAATTTGATGTTAATTTATTTAATTCAAAATCCAGATTATCAGTCAACAGGGTCAAGGAAAGCGAAAAAAAACATTTACAATCATCGGACTTCCCGGAAGGGGTATGCCAACCTTGCTAAAGAATTGGTGAGACACAACTTATTGATTCTTATAATATATGTTTATATTATTTTTTAGGTTCAAATATTGAAAAGTATGAAAATTGTGTAGAAAGGGTCTTCATCAAATCCAATTGATCAATCCATCATATGGGAAAAGGCTCGCATGGATCGTAAGGGACAAATCCTGACAAACATACGAAAGAAGTGATTGATCGTATAGTAAGTATTTTATACTAGACGTTATTCATTCATGGATCAACACCTAATTAGTATTCTTGTTAAACTTTAATAGGATGAACTCTTAGCTACCCAAGAGGTCAATGGTACGAATGTACCAACAGGTGGCGATATACTAACACATGTTTTGGGTAATCAAAATCAACCGGTTATAATTAGAGGGGTGGGTAAGTATGTCACTAAGATGAAGTATTTCTGTACCTTGAGACGAACAAAAGAGGTGGAGAAGGGTGAGGACAACACATATACTAAAGAACGAGCTAGAATGGTTGCACAGATTAAAGAGTTAGATGAGGAACTACTTAAACACAAGAAGAGTGGATAA

mRNA sequence

ATGCCATGGAACTCCGTTTTGACCCATTATCAGTCAACAGGGTCAAGGAAAGCGAAAAAAAACATTTACAATCATCGGACTTCCCGGAAGGGGTATGCCAACCTTGCTAAAGAATTGGATGAACTCTTAGCTACCCAAGAGGTCAATGGTACGAATGTACCAACAGGTGGCGATATACTAACACATGTTTTGGGTAATCAAAATCAACCGGTTATAATTAGAGGGGTGGGTAAGTATGTCACTAAGATGAAGTATTTCTGTACCTTGAGACGAACAAAAGAGGTGGAGAAGGGTGAGGACAACACATATACTAAAGAACGAGCTAGAATGGTTGCACAGATTAAAGAGTTAGATGAGGAACTACTTAAACACAAGAAGAGTGGATAA

Coding sequence (CDS)

ATGCCATGGAACTCCGTTTTGACCCATTATCAGTCAACAGGGTCAAGGAAAGCGAAAAAAAACATTTACAATCATCGGACTTCCCGGAAGGGGTATGCCAACCTTGCTAAAGAATTGGATGAACTCTTAGCTACCCAAGAGGTCAATGGTACGAATGTACCAACAGGTGGCGATATACTAACACATGTTTTGGGTAATCAAAATCAACCGGTTATAATTAGAGGGGTGGGTAAGTATGTCACTAAGATGAAGTATTTCTGTACCTTGAGACGAACAAAAGAGGTGGAGAAGGGTGAGGACAACACATATACTAAAGAACGAGCTAGAATGGTTGCACAGATTAAAGAGTTAGATGAGGAACTACTTAAACACAAGAAGAGTGGATAA

Protein sequence

MPWNSVLTHYQSTGSRKAKKNIYNHRTSRKGYANLAKELDELLATQEVNGTNVPTGGDILTHVLGNQNQPVIIRGVGKYVTKMKYFCTLRRTKEVEKGEDNTYTKERARMVAQIKELDEELLKHKKSG

Homology

[Close]

BLAST of ClCG02G011080 vs. TrEMBL
Match: A5BLZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025701 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1


Query: 10  YQSTGSRKAKKNIYNHRTSRKGYANLAKELDELLATQEVNGTNVPTGGDILTHVLGNQNQ 69
           Y+     + KK+IYNH  SRKGYA L +E+D+LL   E NG +V    DIL   LG    
Sbjct: 785 YREVQKERRKKHIYNHHLSRKGYAGLEEEMDKLLKESEENGRSVNGSNDILVEALGTPEY 844

Query: 70  PVIIRGVGKYVTKMKYFCTL--RRTKEVEKGEDNTYTKERARMVAQIKEL 118
              +R  GK+ T  +YF T+  R  ++          K +A ++A++ ++
Sbjct: 845 SGRVRAKGKHHTPCQYFNTVVDRAVRDFIATSQEEQRKFQAEVLAKLSQV 894

[Close]

BLAST of ClCG02G011080 vs. TrEMBL
Match: A5B1X5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012055 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = 1


Query: 10   YQSTGSRKAKKNIYNHRTSRKGYANLAKELDELLATQEVNGTNVPTGGDILTHVLGNQNQ 69
            Y      + KK+IYNH  SRKGYA L + +D+LL   E NG +V    DIL   LG    
Sbjct: 965  YXEVQKERRKKHIYNHHLSRKGYAGLEEXMDKLLKESEENGRSVNGSNDILVEALGTPEY 1024

Query: 70   PVIIRGVGKYVTKMKYFCTLRRTKEVEKGEDNTYTKERARMVAQI 115
               +R  GK+ T  +YF T   T    +    T  +E+ R  A++
Sbjct: 1025 SGRVRAKGKHHTPRQYFNT--ATBXAVRDFIATSQEEQRRFQAEV 1067

[Close]

BLAST of ClCG02G011080 vs. NCBI nr
Match: gi|147822118|emb|CAN63620.1| (hypothetical protein VITISV_025701 [Vitis vinifera])

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-09
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1


Query: 10  YQSTGSRKAKKNIYNHRTSRKGYANLAKELDELLATQEVNGTNVPTGGDILTHVLGNQNQ 69
           Y+     + KK+IYNH  SRKGYA L +E+D+LL   E NG +V    DIL   LG    
Sbjct: 785 YREVQKERRKKHIYNHHLSRKGYAGLEEEMDKLLKESEENGRSVNGSNDILVEALGTPEY 844

Query: 70  PVIIRGVGKYVTKMKYFCTL--RRTKEVEKGEDNTYTKERARMVAQIKEL 118
              +R  GK+ T  +YF T+  R  ++          K +A ++A++ ++
Sbjct: 845 SGRVRAKGKHHTPCQYFNTVVDRAVRDFIATSQEEQRKFQAEVLAKLSQV 894

[Close]

BLAST of ClCG02G011080 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 58  DILTHVLGNQNQPVIIRGVGKYVTKMKYFCTLR-RTKEVEKGEDNTYTKERARMVAQIKE 117
           DIL+  +   + P  IRGVG+YVT  KYF T R + ++V K ED  Y +ERARM A+I E
Sbjct: 7   DILSQAIRGNDPPGRIRGVGQYVTPSKYFHTAREKRRKVSKEED--YAEERARMAARILE 66

Query: 118 LDEELLKHKK 127
           L+ EL+KHKK
Sbjct: 67  LEAELMKHKK 74

[Close]

BLAST of ClCG02G011080 vs. NCBI nr
Match: gi|147789552|emb|CAN74066.1| (hypothetical protein VITISV_012055 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = 1


Query: 10   YQSTGSRKAKKNIYNHRTSRKGYANLAKELDELLATQEVNGTNVPTGGDILTHVLGNQNQ 69
            Y      + KK+IYNH  SRKGYA L + +D+LL   E NG +V    DIL   LG    
Sbjct: 965  YXEVQKERRKKHIYNHHLSRKGYAGLEEXMDKLLKESEENGRSVNGSNDILVEALGTPEY 1024

Query: 70   PVIIRGVGKYVTKMKYFCTLRRTKEVEKGEDNTYTKERARMVAQI 115
               +R  GK+ T  +YF T   T    +    T  +E+ R  A++
Sbjct: 1025 SGRVRAKGKHHTPRQYFNT--ATBXAVRDFIATSQEEQRRFQAEV 1067

The following BLAST results are available for this feature:

BLAST of ClCG02G011080 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BLZ2_VITVI	5.0e-09	34.55	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025701 PE=4 SV=1	[more]
A5B1X5_VITVI	1.2e-07	36.19	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012055 PE=4 SV=1	[more]

BLAST of ClCG02G011080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147822118\|emb\|CAN63620.1\|	7.1e-09	34.55	hypothetical protein VITISV_025701 [Vitis vinifera]	[more]
gi\|659134106\|ref\|XP_008467031.1\|	4.6e-08	52.86	PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo]	[more]
gi\|147789552\|emb\|CAN74066.1\|	1.8e-07	36.19	hypothetical protein VITISV_012055 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011080.1	ClCG02G011080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..127 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G011080	Cucumber (Gy14) v1	cgywcgB182
ClCG02G011080	Cucurbita maxima (Rimu)	cmawcgB461
ClCG02G011080	Cucurbita maxima (Rimu)	cmawcgB486
ClCG02G011080	Cucurbita maxima (Rimu)	cmawcgB546
ClCG02G011080	Cucurbita moschata (Rifu)	cmowcgB486
ClCG02G011080	Cucurbita moschata (Rifu)	cmowcgB543
ClCG02G011080	Wild cucumber (PI 183967)	cpiwcgB477
ClCG02G011080	Wild cucumber (PI 183967)	cpiwcgB581
ClCG02G011080	Melon (DHL92) v3.5.1	mewcgB102
ClCG02G011080	Watermelon (97103) v1	wcgwmB197
ClCG02G011080	Cucurbita pepo (Zucchini)	cpewcgB235
ClCG02G011080	Cucurbita pepo (Zucchini)	cpewcgB271
ClCG02G011080	Cucurbita pepo (Zucchini)	cpewcgB649
ClCG02G011080	Bottle gourd (USVL1VR-Ls)	lsiwcgB049
ClCG02G011080	Bottle gourd (USVL1VR-Ls)	lsiwcgB102
ClCG02G011080	Cucumber (Gy14) v2	cgybwcgB419
ClCG02G011080	Cucumber (Gy14) v2	cgybwcgB512
ClCG02G011080	Melon (DHL92) v3.6.1	medwcgB101
ClCG02G011080	Silver-seed gourd	carwcgB0337
ClCG02G011080	Cucumber (Chinese Long) v3	cucwcgB475
ClCG02G011080	Cucumber (Chinese Long) v3	cucwcgB578
ClCG02G011080	Watermelon (97103) v2	wcgwmbB138
ClCG02G011080	Watermelon (97103) v2	wcgwmbB143
ClCG02G011080	Wax gourd	wcgwgoB308