ClCG02G011040 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G011040
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 22813806 .. 22815365 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCGTCCACGCTTGACTCATAACCTAGATGGAGTTCCTATCCAATGTCCTGATTGGTCCAAGGATGAACTTTTGTTTCGTGGACTGAATATTGTGAACAAATTCAAAGATAGGGCTTATTTGGCCGCTTTTCTTTCCTGCTGGTTGTGCATGTTCATGTTTCCTGACAAACAAACTTTTGTTCATCAAGAGGTTTTTAAGGCAGCTAATCTTATGGTTGAAGGCCATATTTTTAGCCTTGTTGTTCCTATCTTGGCTAATATTTACAGTGGGTTGCACCGGGTTCACAATGTTTCTTGGTTTACTGGTTATTCGAATGCATGCTTTTCATTACATTATATTTATGGATGACTTGCCATTTATTTCAATACACATTACAGAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGGTAAGTATGTGTCCTGACATGCATGTCTATAGAAACAAAATAAATATGATCTTTTAAACGATGATGGAAAGCTGACCTAGTGGCTTTCTTAATTCTTCGTGAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATGTGTTGGGCCATTGGATGATATGCATTCGTGAAAATATATTGTCCCAAGTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAGTAATGAAGACCATTATTGAAAGAGAACCAAAAGGTCTGATAAACAACCGATTTGCAAAGAATGATTTTTTGACGGGGTTCCGAGCGTTCTAGAGTTTCTTGATATCACTACCCTCGTGGTAGGTGTTTGGTAATTTTTAAAACCCTTTTTCATAAGTCAATGTTCCATCTATTTACTTATTATTACCTTTGCTTTCTAGTCACCTTTAGATGATTGTATCCTAGATATTGGAGAAACATCGAAATTTTTTGTGAGTACATATGATTATAATTCTACTCGTGTTGGCAACTTTAAACCACCAATGGACACACTTGTGACTTCGACCTAACCTCTTGTAATAAAAGATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

mRNA sequence

ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

Coding sequence (CDS)

ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

Protein sequence

MDHSRILVSAWISFRFKRFAVKYLKPPTHKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLETGGLTFGHIKKSGSNRPRQAQKTMSMTASEASHFCVIDVLFDV
Homology
[Close]
BLAST of ClCG02G011040 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 9.4e-12
Identity = 56/168 (33.33%), Postives = 77/168 (45.83%), Query Frame = 1 

Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPK---VFDPASYPHSVR--------- 93
           ++    ++RGP MV FSGEGG +YY N EA  HI K   V   A  P   +         
Sbjct: 250 HYKAPRSLRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGE 309

Query: 94  -LPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNL-----------H 153
            + W+    I I       F    C      SST+I P      +              +
Sbjct: 310 LISWNASFFISIHSC----FLSSQC-----GSSTVIEPYSPCRFSRQFGFYQDVPYDLGY 369

Query: 154 THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNG 178
           TH+TSHY+ WW  KHG+YL+EG+QHL+D  +    K K +KK  ++ G
Sbjct: 370 THVTSHYKVWWLAKHGDYLQEGVQHLIDRPTPPHIKSKTTKKIEHNFG 408

[Close]
BLAST of ClCG02G011040 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 42.0 bits (97), Expect = 1.7e+00
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 1 

Query: 1   MDHSRILVSAWISFRFKRFAVKYLKPPTHKVKE 34
           MDHS+I VS WISF   R  VKY KPP  K K+
Sbjct: 91  MDHSQITVSEWISFWVTRSEVKYSKPPPRKPKK 123

The following BLAST results are available for this feature:
BLAST of ClCG02G011040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665095|ref|XP_011648484.1|9.4e-1233.33PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus][more]
gi|778665095|ref|XP_011648484.1|1.7e+0060.61PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G011040.1ClCG02G011040.1mRNA