ClCG02G011000 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G011000
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTetratricopeptide repeat protein 37
LocationCG_Chr02 : 22759509 .. 22760158 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAATGGTACTTTTGTTAGAATGTACGTGGTGGTAGGAACGACCATAGGGTTGTTCTCGCCATTGGCATATGTGTTGGGTGGGTTTGCGAGAAGTGACAAGCATGCGGTTCGATCGGCAACACCACATTTATTCTTGTTGTCGTTTCAGATTATTTTAACGGAGAATGTGATAAGTGGGTTGTCATTGTTCTCGCCACCGATAAGAGTGTTGGTGGTGTTGCTACTTTACATGGTCCGGAGAATTTTCGTCATCATGGATTGGATGAAAGATGTTTGGCTTAATAAAACCCTGCCGGCAAATGCACCCATCCAGGTACGTATTTATTTTGATTAAATTCTAAGTTCTCTTGTTTTATTATTCCTCAATTTTGCATTTGCAATTATTATATGTCTGAAAGTTTTGAACTTACTTAGCCCACAAGAAAATGTAAATATTGGAAATTGTGGTAACACGTGGGTTGAAATTGCAAGACATAGCATGGTTTTGGTTTGGAAGGACATAAGCGATGGCTAATTTTGCGTATTTCTGCATAAATTTATTTGGATTTCTAGTCCCAAGATTCCTTCCAAGGGCATGTGAAAGGTATTTTAGGGACGAAACTCATGCTCATTAATATTAATTTTCTTGTAAATTTAGAATATTAG

mRNA sequence

ATGTTTAATGGTACTTTTGTTAGAATGTACGTGGTGGTAGGAACGACCATAGGGTTGTTCTCGCCATTGGCATATGTGTTGGGTGGGTTTGCGAGAAGTGACAAGCATGCGGTTCGATCGGCAACACCACATTTATTCTTGTTGTCGTTTCAGATTATTTTAACGGAGAATGTGATAAGTGGGTTGTCATTGTTCTCGCCACCGATAAGAGTGTTGGTGGTGTTGCTACTTTACATGGTCCGGAGAATTTTCGTCATCATGGATTGGATGAAAGATGTTTGGCTTAATAAAACCCTGCCGGCAAATGCACCCATCCAGTCCCAAGATTCCTTCCAAGGGCATGTGAAAGAATATTAG

Coding sequence (CDS)

ATGTTTAATGGTACTTTTGTTAGAATGTACGTGGTGGTAGGAACGACCATAGGGTTGTTCTCGCCATTGGCATATGTGTTGGGTGGGTTTGCGAGAAGTGACAAGCATGCGGTTCGATCGGCAACACCACATTTATTCTTGTTGTCGTTTCAGATTATTTTAACGGAGAATGTGATAAGTGGGTTGTCATTGTTCTCGCCACCGATAAGAGTGTTGGTGGTGTTGCTACTTTACATGGTCCGGAGAATTTTCGTCATCATGGATTGGATGAAAGATGTTTGGCTTAATAAAACCCTGCCGGCAAATGCACCCATCCAGTCCCAAGATTCCTTCCAAGGGCATGTGAAAGAATATTAG

Protein sequence

MFNGTFVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVISGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQSQDSFQGHVKEY
Homology
[Close]
BLAST of ClCG02G011000 vs. TrEMBL
Match: A0A0A0KAF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094170 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.6e-40
Identity = 89/102 (87.25%), Postives = 93/102 (91.18%), Query Frame = 1 

Query: 5   TFVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVISGLSL 64
           T  RMYVVVGTTIGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVISGLSL
Sbjct: 112 TLFRMYVVVGTTIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVISGLSL 171

Query: 65  FSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           FSPP+R LV  LLY VRRIFVIMDWMKDVWLNK+LPANAPI+
Sbjct: 172 FSPPVRALVP-LLYTVRRIFVIMDWMKDVWLNKSLPANAPIK 211

[Close]
BLAST of ClCG02G011000 vs. TrEMBL
Match: M5XMT2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016846mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+ F R+YV+VGTT GLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVI
Sbjct: 102 IFQGSRFFRVYVIVGTTTGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVI 161

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  LLY VRRIFVI+DW +DVWLNKTLPANA ++
Sbjct: 162 SGLSLFSPPVRALVP-LLYTVRRIFVILDWTRDVWLNKTLPANAQLK 206

[Close]
BLAST of ClCG02G011000 vs. TrEMBL
Match: A0A061E567_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008613 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-37
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+   R+YV++GTTIGLF PLAYVLGGFAR DKHAVRSATPHLFLLSFQ ILTENVI
Sbjct: 101 IFQGSKLFRLYVILGTTIGLFLPLAYVLGGFARGDKHAVRSATPHLFLLSFQ-ILTENVI 160

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  +LY VRRIF+I+DWM DVWLNKTLPANA ++
Sbjct: 161 SGLSLFSPPVRALVP-VLYTVRRIFIIIDWMHDVWLNKTLPANAQLK 205

[Close]
BLAST of ClCG02G011000 vs. TrEMBL
Match: D7TB12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03990 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+   R+YV+VGT IGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTEN+I
Sbjct: 105 IFQGSRLFRLYVIVGTAIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENII 164

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  LLY VRRIFVI+DW+ DVWLNKTLPANAP +
Sbjct: 165 SGLSLFSPPVRALVP-LLYTVRRIFVIVDWIVDVWLNKTLPANAPFK 209

[Close]
BLAST of ClCG02G011000 vs. TrEMBL
Match: A5BC59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014982 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+   R+YV+VGT IGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTEN+I
Sbjct: 105 IFQGSRLFRLYVIVGTAIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENII 164

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  LLY VRRIFVI+DW+ DVWLNKTLPANAP +
Sbjct: 165 SGLSLFSPPVRALVP-LLYTVRRIFVIVDWIVDVWLNKTLPANAPFK 209

[Close]
BLAST of ClCG02G011000 vs. TAIR10
Match: AT1G27990.1 (AT1G27990.1 unknown protein)

HSP 1 Score: 144.8 bits (364), Expect = 3.3e-35
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+   R+YV+ GTTIGLF PLAYVLGGFAR D HAVRSATPHLFLLS Q ILTENVI
Sbjct: 98  VFRGSKLFRLYVISGTTIGLFLPLAYVLGGFARGDDHAVRSATPHLFLLSCQ-ILTENVI 157

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANA 104
           SGLSLFSPP+R LV  LLY V RIFVI+ W KDVW NK+LP NA
Sbjct: 158 SGLSLFSPPVRALVP-LLYTVWRIFVIIGWSKDVWFNKSLPINA 199

[Close]
BLAST of ClCG02G011000 vs. TAIR10
Match: AT5G52420.1 (AT5G52420.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 8   RMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVISGLSLFSP 67
           R+YV     +GL  P+ Y+  G    DK+ V +A PH+FLL+ QI +    ++ +  FS 
Sbjct: 104 RIYVTAAGIVGLIIPICYIFEGIVEDDKNGVSAAAPHVFLLASQIFM--EGLATMFGFSA 163

Query: 68  PIRVLVVLLLYMVRRIFVIMDWM 91
           P R+LV  ++Y  RR+  +++W+
Sbjct: 164 PARILVP-IVYNARRVLTLVEWI 183

[Close]
BLAST of ClCG02G011000 vs. TAIR10
Match: AT5G23920.1 (AT5G23920.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-08
Identity = 36/83 (43.37%), Postives = 44/83 (53.01%), Query Frame = 1 

Query: 10  YVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVISGLS-LFSPP 69
           Y +    IGL  PL Y+  G  R D H   +A PHLFLLS Q   TE +  G S  +S P
Sbjct: 94  YFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQ-AFTEPI--GFSDKYSMP 153

Query: 70  IRVLVVLLLYMVRRIFVIMDWMK 92
           I +L   + Y  RRIF ++DW+K
Sbjct: 154 IGILGP-VFYNARRIFALLDWVK 172

[Close]
BLAST of ClCG02G011000 vs. NCBI nr
Match: gi|778711828|ref|XP_004140642.2| (PREDICTED: uncharacterized protein LOC101203000 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 7.2e-40
Identity = 91/107 (85.05%), Postives = 96/107 (89.72%), Query Frame = 1 

Query: 1   MFNG-TFVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G T  RMYVVVGTTIGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVI
Sbjct: 107 IFQGSTLFRMYVVVGTTIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVI 166

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  LLY VRRIFVIMDWMKDVWLNK+LPANAPI+
Sbjct: 167 SGLSLFSPPVRALVP-LLYTVRRIFVIMDWMKDVWLNKSLPANAPIK 211

[Close]
BLAST of ClCG02G011000 vs. NCBI nr
Match: gi|700191244|gb|KGN46448.1| (hypothetical protein Csa_6G094170 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 9.4e-40
Identity = 89/102 (87.25%), Postives = 93/102 (91.18%), Query Frame = 1 

Query: 5   TFVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVISGLSL 64
           T  RMYVVVGTTIGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVISGLSL
Sbjct: 112 TLFRMYVVVGTTIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVISGLSL 171

Query: 65  FSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           FSPP+R LV  LLY VRRIFVIMDWMKDVWLNK+LPANAPI+
Sbjct: 172 FSPPVRALVP-LLYTVRRIFVIMDWMKDVWLNKSLPANAPIK 211

[Close]
BLAST of ClCG02G011000 vs. NCBI nr
Match: gi|659119836|ref|XP_008459868.1| (PREDICTED: uncharacterized protein LOC103498861 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 6.1e-39
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 1 

Query: 1   MFNG-TFVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G T  RMYVVVGTT+GLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVI
Sbjct: 105 IFQGSTLFRMYVVVGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVI 164

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANAPIQ 107
           SGLSLFSPP+R LV  LLY VRRIFVIMDW KDVWLNK LPANAPI+
Sbjct: 165 SGLSLFSPPVRALVP-LLYTVRRIFVIMDWTKDVWLNKALPANAPIK 209

[Close]
BLAST of ClCG02G011000 vs. NCBI nr
Match: gi|694393634|ref|XP_009372247.1| (PREDICTED: uncharacterized protein LOC103961432 [Pyrus x bretschneideri])

HSP 1 Score: 164.9 bits (416), Expect = 8.8e-38
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+ F R YVV GTTIGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVI
Sbjct: 103 IFQGSRFFRFYVVAGTTIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVI 162

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANA 104
           SGLSLFSPP+R LV  LLY VRRIFVI+DWMKDVWLNKTLPANA
Sbjct: 163 SGLSLFSPPVRALVP-LLYTVRRIFVILDWMKDVWLNKTLPANA 204

[Close]
BLAST of ClCG02G011000 vs. NCBI nr
Match: gi|658010032|ref|XP_008340242.1| (PREDICTED: uncharacterized protein LOC103403187 [Malus domestica])

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 1   MFNGT-FVRMYVVVGTTIGLFSPLAYVLGGFARSDKHAVRSATPHLFLLSFQIILTENVI 60
           +F G+ F R YVVVGTTIGLF PLAYVLGGFAR D+HAVRSATPHLFLLSFQ ILTENVI
Sbjct: 105 IFQGSRFFRFYVVVGTTIGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQ-ILTENVI 164

Query: 61  SGLSLFSPPIRVLVVLLLYMVRRIFVIMDWMKDVWLNKTLPANA 104
           SGLSLFSPP+R LV  LLY VRRI VI+DWMKDVWLNKTLPANA
Sbjct: 165 SGLSLFSPPVRALVP-LLYTVRRIXVILDWMKDVWLNKTLPANA 206

The following BLAST results are available for this feature:
BLAST of ClCG02G011000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAF1_CUCSA6.6e-4087.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094170 PE=4 SV=1[more]
M5XMT2_PRUPE5.2e-3778.50Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016846mg PE=4 S... [more]
A0A061E567_THECC6.8e-3777.57Uncharacterized protein OS=Theobroma cacao GN=TCM_008613 PE=4 SV=1[more]
D7TB12_VITVI1.2e-3677.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03990 PE=4 SV=... [more]
A5BC59_VITVI1.2e-3677.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014982 PE=4 SV=1[more]
BLAST of ClCG02G011000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27990.13.3e-3575.00 unknown protein[more]
AT5G52420.11.1e-0934.94 unknown protein[more]
AT5G23920.12.7e-0843.37 unknown protein[more]
BLAST of ClCG02G011000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778711828|ref|XP_004140642.2|7.2e-4085.05PREDICTED: uncharacterized protein LOC101203000 [Cucumis sativus][more]
gi|700191244|gb|KGN46448.1|9.4e-4087.25hypothetical protein Csa_6G094170 [Cucumis sativus][more]
gi|659119836|ref|XP_008459868.1|6.1e-3983.18PREDICTED: uncharacterized protein LOC103498861 [Cucumis melo][more]
gi|694393634|ref|XP_009372247.1|8.8e-3883.65PREDICTED: uncharacterized protein LOC103961432 [Pyrus x bretschneideri][more]
gi|658010032|ref|XP_008340242.1|2.0e-3783.65PREDICTED: uncharacterized protein LOC103403187 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G011000.1ClCG02G011000.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33829FAMILY NOT NAMEDcoord: 1..108
score: 4.2
NoneNo IPR availablePANTHERPTHR33829:SF2SUBFAMILY NOT NAMEDcoord: 1..108
score: 4.2