ClCG02G010840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 22118473 .. 22119314 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCCGCAGCGGGAGAACTACTGGATAAAACTTATACCGAGGCCAAGGAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGTAGGCAAAGCAATGCGTCAAGAGCACCTGAGCATAATAGTGTTGCTTCGTTACAAGCTTAAGTCACCGCCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCTGCAAGATGCATTGGATGCGGGGAGCCGCATACGTATGAGGTATGTCCACAAAACCCTCAATTTGTATGGTTCATACGGAACAACCTGTATTCCAATACCTACAACCTTGGTTGGAGGAATCATCCGAATTTCTCATGGGGTGGTAACTGCCAGCCTGAGCAGCAAGGTGCGCCCACGCACGAAAGGGGTGGATCATCTGGATTCTCCCATGAACATCAGAGGCAAAATCCACATCAATCAACGCCTAGTCCATCATCATCCGTGGAAGCTCTTCTAAAGGAATACATGCAGAAGAACGACACCTTGATGCAAACCCAGGCGTCGTTCATCAGGAACTTAGAGCTCCAGATTGGCCAGATCGGTGGAGAGCTTAAGACGCGGCGAAAAGGATCTCTTCCGAGCAACACCGAAGTCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAGCTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTGACCCATCAACGCAATAA

mRNA sequence

ATGCTGCCGCAGCGGGAGAACTACTGGATAAAACTTATACCGAGGCCAAGGAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGTAGGCAAAGCAATGCGTCAAGAGCACCTGAGCATAATAGTGTTGCTTCTCACCGCCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGAATACATGCAGAAGAACGACACCTTGATGCAAACCCAGGCGTCGTTCATCAGGAACTTAGAGCTCCAGATTGGCCAGATCGGTGGAGAGCTTAAGACGCGGCGAAAAGGATCTCTTCCGAGCAACACCGAAGTCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAGCTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTGACCCATCAACGCAATAA

Coding sequence (CDS)

ATGCTGCCGCAGCGGGAGAACTACTGGATAAAACTTATACCGAGGCCAAGGAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGTAGGCAAAGCAATGCGTCAAGAGCACCTGAGCATAATAGTGTTGCTTCTCACCGCCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGAATACATGCAGAAGAACGACACCTTGATGCAAACCCAGGCGTCGTTCATCAGGAACTTAGAGCTCCAGATTGGCCAGATCGGTGGAGAGCTTAAGACGCGGCGAAAAGGATCTCTTCCGAGCAACACCGAAGTCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAGCTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTGACCCATCAACGCAATAA

Protein sequence

MLPQRENYWIKLIPRPRKFSIEYQETMKIGRTMDIADLAVGKAMRQEHLSIIVLLLTAMTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRPENSQPTIHLSNPTTDSDPSTQ

Homology

[Close]

BLAST of ClCG02G010840 vs. TrEMBL
Match: A0A0A0KMN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-15
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 68  LNQSNIGGGG--QVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPS 127
           LNQS+        + ++ QEYMQ+ND L+Q+QA+ I+NLELQ+GQI  ++  + KG+LPS
Sbjct: 57  LNQSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPS 116

Query: 128 NTEVPRGTGSSGKEQCQAVTL 147
           NTE+P   GSSGKE+CQAVTL
Sbjct: 117 NTEIPIQGGSSGKEKCQAVTL 137

[Close]

BLAST of ClCG02G010840 vs. TrEMBL
Match: A0A0A0KN83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 79  VNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGK 138
           + A+ +EYMQ+ND L+Q+QAS I+NLELQ+GQ+  ++  R KG+L  NT+ P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 139 EQCQAVTLRSGR 151
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]

BLAST of ClCG02G010840 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-07
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 85  EYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEV-PRGTGSSGKEQCQA 144
           ++M K +  +Q QA+ IRNLE+Q+GQ+   L  R +G LPS+TE  PR     GKE C A
Sbjct: 252 QFMTKTNAFIQNQATSIRNLEIQVGQLASALNIRPQGILPSDTEPNPR---REGKEHCMA 311

Query: 145 VTLRSGRAMNELP 157
           +TL +G+  N+LP
Sbjct: 312 ITLHNGKE-NKLP 320

[Close]

BLAST of ClCG02G010840 vs. TrEMBL
Match: A0A061FVX6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 85  EYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAV 144
           +Y+ KND ++Q+ ++ +RNL+ Q+GQ+   +  R + +LPS+T+V       GKE C AV
Sbjct: 217 QYISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALPSDTQV----NPKGKEHCNAV 276

Query: 145 TLRSGR 151
           TLRSG+
Sbjct: 277 TLRSGK 278

[Close]

BLAST of ClCG02G010840 vs. NCBI nr
Match: gi|700194490|gb|KGN49667.1| (hypothetical protein Csa_5G055570 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 68  LNQSNIGGGG--QVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPS 127
           LNQS+        + ++ QEYMQ+ND L+Q+QA+ I+NLELQ+GQI  ++  + KG+LPS
Sbjct: 57  LNQSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPS 116

Query: 128 NTEVPRGTGSSGKEQCQAVTL 147
           NTE+P   GSSGKE+CQAVTL
Sbjct: 117 NTEIPIQGGSSGKEKCQAVTL 137

[Close]

BLAST of ClCG02G010840 vs. NCBI nr
Match: gi|700195831|gb|KGN51008.1| (hypothetical protein Csa_5G403040 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 5.3e-10
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 79  VNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGK 138
           + A+ +EYMQ+ND L+Q+QAS I+NLELQ+GQ+  ++  R KG+L  NT+ P   G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 139 EQCQAVTLRSGR 151
           ++ Q VTLRS R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]

BLAST of ClCG02G010840 vs. NCBI nr
Match: gi|985470850|ref|XP_015381091.1| (PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 79  VNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGK 138
           + A+ ++Y+ KN+ ++Q+ A+ +RNLE QIGQ+   +  R +GSLPSNTE PR     GK
Sbjct: 110 LEALIKDYIVKNEAVVQSHAASLRNLENQIGQLATAVSNRPQGSLPSNTENPR---REGK 169

Query: 139 EQCQAVTLRSGRAMN 154
           E C+ + LRSG+ ++
Sbjct: 170 EHCKVINLRSGKEVD 181

[Close]

BLAST of ClCG02G010840 vs. NCBI nr
Match: gi|848930963|ref|XP_012828623.1| (PREDICTED: uncharacterized protein LOC105949865 [Erythranthe guttata])

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 96  TQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNEL 155
           TQAS IRNLE Q+GQ+  +L  R  G+LPSNTE PR    +  EQC AV+LR+GR + E 
Sbjct: 4   TQAS-IRNLETQMGQLATQLTARPSGALPSNTEDPR---KNNVEQCNAVSLRNGRQLEEA 63

Query: 156 PRPENSQPTIHLSNPTTDSD 176
           PR E     I   N   + +
Sbjct: 64  PRKEKQNTVIEEPNEIEEKE 79

[Close]

BLAST of ClCG02G010840 vs. NCBI nr
Match: gi|985458955|ref|XP_015387963.1| (PREDICTED: uncharacterized protein LOC107177920 [Citrus sinensis])

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 85  EYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAV 144
           ++M K +T  Q QA+ IRNLE+Q+GQI   L +R+ GSLPSNTE      ++ KEQ  A+
Sbjct: 358 QFMTKTETNFQNQAASIRNLEVQVGQIANFLSSRQHGSLPSNTE------TNPKEQVNAI 417

Query: 145 TLRSGRAMNELPRPE 160
            LRSG+ ++E PR E
Sbjct: 418 ILRSGKQLDE-PRKE 425

The following BLAST results are available for this feature:

BLAST of ClCG02G010840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMN3_CUCSA	2.9e-15	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1	[more]
A0A0A0KN83_CUCSA	3.7e-10	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1	[more]
A0A061EW79_THECC	6.5e-07	46.58	Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1	[more]
A0A061FVX6_THECC	1.4e-06	42.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1	[more]

BLAST of ClCG02G010840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194490\|gb\|KGN49667.1\|	4.2e-15	55.56	hypothetical protein Csa_5G055570 [Cucumis sativus]	[more]
gi\|700195831\|gb\|KGN51008.1\|	5.3e-10	50.00	hypothetical protein Csa_5G403040 [Cucumis sativus]	[more]
gi\|985470850\|ref\|XP_015381091.1\|	1.7e-08	44.00	PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis]	[more]
gi\|848930963\|ref\|XP_012828623.1\|	3.8e-08	47.50	PREDICTED: uncharacterized protein LOC105949865 [Erythranthe guttata]	[more]
gi\|985458955\|ref\|XP_015387963.1\|	3.8e-08	49.33	PREDICTED: uncharacterized protein LOC107177920 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010840.1	ClCG02G010840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G010840	Cucurbita maxima (Rimu)	cmawcgB461
ClCG02G010840	Cucurbita maxima (Rimu)	cmawcgB486
ClCG02G010840	Cucurbita maxima (Rimu)	cmawcgB546
ClCG02G010840	Cucurbita moschata (Rifu)	cmowcgB486
ClCG02G010840	Cucurbita moschata (Rifu)	cmowcgB543
ClCG02G010840	Wild cucumber (PI 183967)	cpiwcgB479
ClCG02G010840	Cucumber (Chinese Long) v2	cuwcgB457
ClCG02G010840	Melon (DHL92) v3.5.1	mewcgB112
ClCG02G010840	Watermelon (97103) v1	wcgwmB197
ClCG02G010840	Watermelon (97103) v1	wcgwmB199
ClCG02G010840	Cucurbita pepo (Zucchini)	cpewcgB235
ClCG02G010840	Cucurbita pepo (Zucchini)	cpewcgB271
ClCG02G010840	Cucurbita pepo (Zucchini)	cpewcgB649
ClCG02G010840	Bottle gourd (USVL1VR-Ls)	lsiwcgB052
ClCG02G010840	Cucumber (Gy14) v2	cgybwcgB420
ClCG02G010840	Melon (DHL92) v3.6.1	medwcgB108
ClCG02G010840	Silver-seed gourd	carwcgB0195
ClCG02G010840	Silver-seed gourd	carwcgB0337
ClCG02G010840	Silver-seed gourd	carwcgB0827
ClCG02G010840	Cucumber (Chinese Long) v3	cucwcgB478
ClCG02G010840	Watermelon (97103) v2	wcgwmbB138
ClCG02G010840	Wax gourd	wcgwgoB287
ClCG02G010840	Cucumber (Gy14) v1	cgywcgB183