ClCG02G010210 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010210
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 17587930 .. 17588226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCCATCCATACTCATGGCAACTTCTAGAGTCTTGCTCAATTTAGTACCTGCTCCAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGACTCAACCTTCAACAGTTGCAAGCCTAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAATGACTTCTTGGAATCAACTATATGTTAA

mRNA sequence

ATGTCTTCTCCATCCATACTCATGGCAACTTCTAGAGTCTTGCTCAATTTAGTACCTGCTCCAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGACTCAACCTTCAACAGTTGCAAGCCTAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAATGACTTCTTGGAATCAACTATATGTTAA

Coding sequence (CDS)

ATGTCTTCTCCATCCATACTCATGGCAACTTCTAGAGTCTTGCTCAATTTAGTACCTGCTCCAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGACTCAACCTTCAACAGTTGCAAGCCTAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAATGACTTCTTGGAATCAACTATATGTTAA

Protein sequence

MSSPSILMATSRVLLNLVPAPETLEAIVPIFRESIAEVPESSISLPPSSDGFNTFDPNRMSARAPTSDSTFNSCKPKGPIRWSAPNPKHNDFLESTIC

Homology

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BLAST of ClCG02G010210 vs. TrEMBL
Match: A0A0A0L2F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MSSPSILMATSRVLLNLVPAPETLEAIVPIFRESIAEVPESSISLPPSSDGFNTF--DPN 60
           MSSP+ LMATSR +L L P   T +A+  + R S       + +  P+S   N+      
Sbjct: 19  MSSPTTLMATSRNILPLEPTTLTNDALSFVQRSS----RHLATTTTPTSRRSNSLKLSKG 78

Query: 61  RMSARAPTSDSTFNSCKPKGPIRWSAPNPKHND 92
           R    +  + ST  SCKPKGPIRWS+P+P  N+
Sbjct: 79  RHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNN 107

[Close]

BLAST of ClCG02G010210 vs. NCBI nr
Match: gi|700199634|gb|KGN54792.1| (hypothetical protein Csa_4G499295 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MSSPSILMATSRVLLNLVPAPETLEAIVPIFRESIAEVPESSISLPPSSDGFNTF--DPN 60
           MSSP+ LMATSR +L L P   T +A+  + R S       + +  P+S   N+      
Sbjct: 19  MSSPTTLMATSRNILPLEPTTLTNDALSFVQRSS----RHLATTTTPTSRRSNSLKLSKG 78

Query: 61  RMSARAPTSDSTFNSCKPKGPIRWSAPNPKHND 92
           R    +  + ST  SCKPKGPIRWS+P+P  N+
Sbjct: 79  RHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNN 107

The following BLAST results are available for this feature:

BLAST of ClCG02G010210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F6_CUCSA	3.0e-06	39.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499295 PE=4 SV=1	[more]

BLAST of ClCG02G010210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199634\|gb\|KGN54792.1\|	4.3e-06	39.78	hypothetical protein Csa_4G499295 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010210.1	ClCG02G010210.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G010210	Cucumber (Gy14) v2	cgybwcgB124
ClCG02G010210	Melon (DHL92) v3.6.1	medwcgB096
ClCG02G010210	Silver-seed gourd	carwcgB0330
ClCG02G010210	Silver-seed gourd	carwcgB0781
ClCG02G010210	Cucumber (Chinese Long) v3	cucwcgB142
ClCG02G010210	Watermelon (97103) v2	wcgwmbB138
ClCG02G010210	Wax gourd	wcgwgoB307
ClCG02G010210	Cucurbita maxima (Rimu)	cmawcgB501
ClCG02G010210	Cucurbita maxima (Rimu)	cmawcgB536
ClCG02G010210	Cucurbita moschata (Rifu)	cmowcgB487
ClCG02G010210	Cucurbita moschata (Rifu)	cmowcgB534
ClCG02G010210	Wild cucumber (PI 183967)	cpiwcgB135
ClCG02G010210	Cucumber (Chinese Long) v2	cuwcgB130
ClCG02G010210	Melon (DHL92) v3.5.1	mewcgB099
ClCG02G010210	Cucurbita pepo (Zucchini)	cpewcgB272
ClCG02G010210	Cucurbita pepo (Zucchini)	cpewcgB667
ClCG02G010210	Bottle gourd (USVL1VR-Ls)	lsiwcgB061