ClCG02G009960 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G009960
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Integral membrane protein hemolysin-III like protein
Location	CG_Chr02 : 16335991 .. 16339968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTGAACATTTTTGCGTCCAACTTTGATTTTGATGAGCAAATCTATATTCATTTTCATGGTAATTTGATGGACTGAGCAGTGAAGAAACTATACGACCTTCAGAACTGAGCGTTTCGATTCCACATGGCTCTCCCTTCTCCATCGGAGCGCTTCCAATGAGCTAAGGTAACAATGAAGAGATGCTTTTGATACAATTTTCTTTCGATTTGGTTCAACGAATTTGCTTTGTTCATTAAGAGGTTTAGGTTTGAGTGTTAATTTTGGGAGAAGATGATCGAGGGTCTTTTGTCGTAGCAATTCTTTTGAATTTGCTTCTGCTTCGATTTGACTTCTATCTAGGTTTTCTCAGAGCGGATTTCGTATTTTTCTTCTCTGCCTCATAATTATCTAAAAGATGAAGCTGCTTTTTCATCCTGATTTTCACATTTTAATCGTAAAAGAAGTGGGGAGAAACTGGAAACTAATGGAAGAAAGCAAGATACTTGTAGTTTATGCTCCTCCAGTCTGTATACTTTCAGTGTAATTTCAATAGGCGAGTATAACGCATTTGGGTTTTGGCCATTAGGATGACTTCACCTTTAGCTCTGAGATTCAGCTCCATTGTGTGTAAAGAAGCTTGGTTTAGCAATAAGCTCTGTCAATTTACCCGTCAAAGTATATTCTAGGGTTGTAATCAAAGAAATTCCCATCCAAATGCATTGAAAATGAAAAATCTTGGTCATACTATTCCAACCGCACACACAAAGGAACAAAAACTTGGATAATAAGTTGTTGTCAATTGTATCGTCTAGAATCGCTAATATAGTGCCGAAGGTCAACATTATATCTTGTCGATATTGTGCTTTGAAAGTTGTATGATAAATGGAAGGTATATTCTTGTCATAATGTTGGAAATGTGAAGCTGCTGTAATACTCTCTTGGGACAATTTGTGTTATACTGGTTGATGTCTAATATATGTTCTTATCTAACAATTTACCGTCTGATGTATAACAGTTTGCTGTAAACCTTAAGCTTAATTGGTGTAGATACCTTCTATAATTCTTAAATTGTTGTCATGACTGTAAATAGTTGACTTATGAAGAATGGCGAGTGGTTTTGGAATTATGAGAAGTTTTCCCCTTAAGAAAGAATTGCCGAACAAGAAAAAATGGCCGTGAGTGAGATTCTATGGTTGCTGGAGGAATGGGGAAGTCTTACCATTTGGTTTGGTAATAGACTGATAGCAGATAGCCTTCTTACTTTATTGTATGTTCTGAAATCTGGACCAAATTTGTTCCTACCTCTAAGACATGGAAAATAGTTTTTAAAGCTCATTTTGTTGGATGATTTTAAAAAATAATCGTTCTAACAAAATAGAAATAGCTTCTCAAATAGAAAGCATTCCCATTAATTATCTTTCCTTTTGAAACTTCCCATCCAAATGGATATATATCCATGTCCTGACATTTATTGTTCATATATCCATGCATATCTTATGAGTGTTAATTTCAATAATACTGATAAATGATACTGATTTCTAAAGGGTTATATATCCACGCCTGACATTTATTGTTCATCTCTGATATATATATATATTGTGTATCCCTTCAAAATTTTAAACTTTTCAGATGGTTCAGAAATCCTTAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACATGCCTTCTCAGGAAAAGCAACTGCAGATTTCTGCAAAGAAGACGGCATTAAGGGACTTGCAAAATGATAATAGGGTCAGAGCTCCCAATTGTACTGGAAGCTCCCCACTTTTGAAGGAAAGAGGTACCAGTAGTGACATCATTAAAGTTTCTGGTAACAAGAGAGCCTCACCAGTCTGCCCTGCAAGTCCATCTCATCTCCACTCGTCACCTTCTAATACTGCAAATGGGCATCTTGTTTACGTCCGTAGAAAATCTGATGCAGATATAGGGAAGAATAGTCCTTCTGATAATACGAGCATAAAAGCTGATTATCCAAATCTAAACAAACTTGGTCAAGTAGCTGAGACTGCGCATCTCAATTCCCAGGTTAAGGAGCTGCAGAATCATTGCTTTCAAGCATTTGCTCCTTTTCCAATGGTATCTCCTATGAATGCACCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAGTATGGCATTAATTTAGCCACCGCAGAATCAATCTTCCGTTCTGCACCCTCTACTGTCCCTTCAGAAGGCATCCCAATAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAGTTGTTATTGAATAAATTGGACCAATCAGATCAACATGATTATCTTCAGGGTATGCTTTGCATTTAAGAAACTGCTTTATCTTATTCCTGAAATAGTTTAAATGATCATTATTTACACCGTGAATAATTTTACACTTCTATCAGTGCTCCGGTCGCTGTCATCAGTTGAACTTAGCAGACATGCAGTTGAATTGGAAAAGAGATCCATTCAGCTCTCGCTTGAGGAAGGTAGTTTGATTTCTGGTTTTACATAACTTCGCTTTCCTTTTCTTTACGGGGAACACTACTCGTTTGCAAAATGGAACATTGTCAAATTCATACGTTGGATTCCATTATATTTGCTCAGTGTCCTTTCCTATTCCATATTACTTCTAACTTTCGACTTGCCATGGTGATTTTTCTTCTTTGGGCTGAAGAAGTCTTGGATTTGGACATATTAGATATTCACAGAGGTTGGATAATTTGGTGATCAATAGCTTAAAGATCAAACTTTCATGAAAGTATTCATTGCTAATAAATTAGTCGAAGCTTTATTCCTCCTTACCTTAAGCTTCCTCTCTGTTGGATTTTGACTTGCAAAGGTGGAAAGAATTATCATGAACGTCAAGATAGTCATCTTGCTAGGAAGTTTATACCTAGTCTTTTCTTTGATTTTTTTTTTCTTGATATCCATGACTGTCCGGGCCAGCTAACGCACACCACGACTGATCTCACAGGACAACCCATCTAACCTTACAACATTTTGATATCAAGAAAACTCATAGGATATTAAATTCTAGGTAGGTGGCCACCATGGATTGAACTCATTCCCTCAGCCTTTTATAAAACTCAGGCCCTTTATTTACCACTAGGCCAATGCCCATTCCCTCTCCCTTTTTAATTATGAACTATTAATATATAGCTATATTCCTTGCAAAATGCTGTAGAGATTTCCTCAAAGTAAGTATGATGCTTCTTTTTATTACAGCCCTAGTGCTAACTGGTAACTTCTACAATTATGACTCTGTACCAAGCATACATTTCTGCTCAACCTCTTATTTTTTAGTTCCTAGTTAGACATTAAGACATCACAAGCTATAAAACATCAGAAAGCTTCCTTTTGCTTTGGAACATGATCAAAGTAATTTAAAATTCCTCTTTCCTTCATCACAGCAAAAGAGCTGCAGCGGGTTGGGGTTTTGAATGTGCTTGGAAATCCTGTAAAGAATATCAAAGCGCCGTTAACTCATCAGGACGGTTCAGAGACATAAGAGTATATGCATAACATATTTTTACTTTCAGCCATTGTTCTTCACATCGGTTGGACGAAGATGGCATGCTGGACCACGGTTGCATTGAGTTTGTTCTGAACTAGGAATTCTCAGCTGCCACCAACCGGATGGTTGCTGGTTTCTTGTAATATTCTGCCTACTATTTTCTGATCTAACAATATTTCTCATTTGTTTTGCAAAGGTTGTAAGAAAAGATTGCAACTGTCTTGACTGTTACCAGGAAGAAGAATGTGAACAGAATCCCCACTGGTTTCATCCTCCTAAACTTCCTTTTTATTTGTTCTCTTTGTAGATCCATTGCCATATATTCCTTTGATGGTCGGTTAACAACTCCAACCATAAGTGAGTTAAAATTCAGGCTACGTATATCAGATATATTCATAATCTCTTCAGCATTTGAGTCATATATTTATGTATTCAAGTTGCAAATACTTTTTT

mRNA sequence

CGTTGAACATTTTTGCGTCCAACTTTGATTTTGATGAGCAAATCTATATTCATTTTCATGGTAATTTGATGGACTGAGCAGTGAAGAAACTATACGACCTTCAGAACTGAGCGTTTCGATTCCACATGGCTCTCCCTTCTCCATCGGAGCGCTTCCAATGAGCTAAGATGGTTCAGAAATCCTTAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACATGCCTTCTCAGGAAAAGCAACTGCAGATTTCTGCAAAGAAGACGGCATTAAGGGACTTGCAAAATGATAATAGGGTCAGAGCTCCCAATTGTACTGGAAGCTCCCCACTTTTGAAGGAAAGAGGTACCAGTAGTGACATCATTAAAGTTTCTGGTAACAAGAGAGCCTCACCAGTCTGCCCTGCAAGTCCATCTCATCTCCACTCGTCACCTTCTAATACTGCAAATGGGCATCTTGTTTACGTCCGTAGAAAATCTGATGCAGATATAGGGAAGAATAGTCCTTCTGATAATACGAGCATAAAAGCTGATTATCCAAATCTAAACAAACTTGGTCAAGTAGCTGAGACTGCGCATCTCAATTCCCAGGTTAAGGAGCTGCAGAATCATTGCTTTCAAGCATTTGCTCCTTTTCCAATGGTATCTCCTATGAATGCACCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAGTATGGCATTAATTTAGCCACCGCAGAATCAATCTTCCGTTCTGCACCCTCTACTGTCCCTTCAGAAGGCATCCCAATAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAGTTGTTATTGAATAAATTGGACCAATCAGATCAACATGATTATCTTCAGGTGCTCCGGTCGCTGTCATCAGTTGAACTTAGCAGACATGCAGTTGAATTGGAAAAGAGATCCATTCAGCTCTCGCTTGAGGAAGCAAAAGAGCTGCAGCGGGTTGGGGTTTTGAATGTGCTTGGAAATCCTGTAAAGAATATCAAAGCGCCGTTAACTCATCAGGACGGTTCAGAGACATAAGAGTATATGCATAACATATTTTTACTTTCAGCCATTGTTCTTCACATCGGTTGGACGAAGATGGCATGCTGGACCACGGTTGCATTGAGTTTGTTCTGAACTAGGAATTCTCAGCTGCCACCAACCGGATGGTTGCTGGTTTCTTGTAATATTCTGCCTACTATTTTCTGATCTAACAATATTTCTCATTTGTTTTGCAAAGGTTGTAAGAAAAGATTGCAACTGTCTTGACTGTTACCAGGAAGAAGAATGTGAACAGAATCCCCACTGGTTTCATCCTCCTAAACTTCCTTTTTATTTGTTCTCTTTGTAGATCCATTGCCATATATTCCTTTGATGGTCGGTTAACAACTCCAACCATAAGTGAGTTAAAATTCAGGCTACGTATATCAGATATATTCATAATCTCTTCAGCATTTGAGTCATATATTTATGTATTCAAGTTGCAAATACTTTTTT

Coding sequence (CDS)

ATGGTTCAGAAATCCTTAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACATGCCTTCTCAGGAAAAGCAACTGCAGATTTCTGCAAAGAAGACGGCATTAAGGGACTTGCAAAATGATAATAGGGTCAGAGCTCCCAATTGTACTGGAAGCTCCCCACTTTTGAAGGAAAGAGGTACCAGTAGTGACATCATTAAAGTTTCTGGTAACAAGAGAGCCTCACCAGTCTGCCCTGCAAGTCCATCTCATCTCCACTCGTCACCTTCTAATACTGCAAATGGGCATCTTGTTTACGTCCGTAGAAAATCTGATGCAGATATAGGGAAGAATAGTCCTTCTGATAATACGAGCATAAAAGCTGATTATCCAAATCTAAACAAACTTGGTCAAGTAGCTGAGACTGCGCATCTCAATTCCCAGGTTAAGGAGCTGCAGAATCATTGCTTTCAAGCATTTGCTCCTTTTCCAATGGTATCTCCTATGAATGCACCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAGTATGGCATTAATTTAGCCACCGCAGAATCAATCTTCCGTTCTGCACCCTCTACTGTCCCTTCAGAAGGCATCCCAATAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAGTTGTTATTGAATAAATTGGACCAATCAGATCAACATGATTATCTTCAGGTGCTCCGGTCGCTGTCATCAGTTGAACTTAGCAGACATGCAGTTGAATTGGAAAAGAGATCCATTCAGCTCTCGCTTGAGGAAGCAAAAGAGCTGCAGCGGGTTGGGGTTTTGAATGTGCTTGGAAATCCTGTAAAGAATATCAAAGCGCCGTTAACTCATCAGGACGGTTCAGAGACATAA

Protein sequence

MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLKERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNTSIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKYGINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRSLSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDGSET

Homology

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BLAST of ClCG02G009960 vs. TrEMBL
Match: A0A0A0KAB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118870 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.1e-123
Identity = 227/264 (85.98%), Postives = 235/264 (89.02%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQKS+DSKFSEYGHGN GKD+PSQEKQLQISAKKTA RDLQNDN   A NCTGSSPLLK
Sbjct: 1   MVQKSIDSKFSEYGHGNFGKDVPSQEKQLQISAKKTASRDLQNDNMAIASNCTGSSPLLK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           E GT SDIIKVSGNKRA PV PASPSHLHSS SN+ANGHLVYVRRKSDADIGKNS  DNT
Sbjct: 61  EIGTGSDIIKVSGNKRALPVYPASPSHLHSSTSNSANGHLVYVRRKSDADIGKNSSCDNT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SIKA+YPNLNKLG +A T HL SQ KELQNHC QAFAPFPMVS +NAP KPSVPHH+GK 
Sbjct: 121 SIKANYPNLNKLGSLAVTVHLKSQAKELQNHCVQAFAPFPMVSSVNAPRKPSVPHHMGKC 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
           GINLA AES F SAPST PS GIP+GWKNLQWEDRYHQLQLLLNKLDQSDQ DYLQVL S
Sbjct: 181 GINLAVAESNFHSAPSTFPSVGIPVGWKNLQWEDRYHQLQLLLNKLDQSDQRDYLQVLGS 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEE 265
           LSSVELSRHAVELEKRSIQLSLEE
Sbjct: 241 LSSVELSRHAVELEKRSIQLSLEE 264

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BLAST of ClCG02G009960 vs. TrEMBL
Match: I1K6V1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G000500 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 168/302 (55.63%), Postives = 205/302 (67.88%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           M+Q+S+ SKF EY  GN   D+P+++KQL ++ KKTALRDLQNDN++  P   GSS   K
Sbjct: 1   MIQQSIASKFCEYSLGNCKMDLPNRDKQLTVAVKKTALRDLQNDNKIMVPTSVGSSSFFK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTA-NGHLVYVRRKSDADIGKNSPSDN 120
           ++   +D  +VSG KR     P +  HL  SPSN A NGHLVYVRRKS+A++ K +  +N
Sbjct: 61  DKDLGTDSSRVSGTKRPLSDYPLN-HHLQQSPSNNAANGHLVYVRRKSEAELSKGTAFEN 120

Query: 121 TSIKADYPNLNKLGQVAETAHLNSQVKELQN------HCFQAFAPFPMVSPMNAPGKPSV 180
            SI A  P+  +L    ETA   SQ KE          CF AFAPFPM S MN+ GKPSV
Sbjct: 121 PSIDAYCPHSRQLCCGEETAQPKSQTKEPPQLKEPKVSCFPAFAPFPMASSMNSSGKPSV 180

Query: 181 PHHVGKYGINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHD 240
           P  +GK  + LA  ES + +A S   + G P G KNL WE+RY QLQ+ L KLDQSDQ +
Sbjct: 181 PISLGKSAMKLAPVESNYVTASSGPTTIGNPKGLKNLHWEERYQQLQMFLRKLDQSDQEE 240

Query: 241 YLQVLRSLSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDG 296
           Y+Q+LRSLSSVELS+HAVELEKRSIQLSLEEAKELQRV VLNVLG  VKN KAP  H + 
Sbjct: 241 YIQMLRSLSSVELSKHAVELEKRSIQLSLEEAKELQRVAVLNVLGKSVKNFKAPADHDEC 300

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BLAST of ClCG02G009960 vs. TrEMBL
Match: A0A0B2QIB8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014542 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 168/302 (55.63%), Postives = 205/302 (67.88%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           M+Q+S+ SKF EY  GN   D+P+++KQL ++ KKTALRDLQNDN++  P   GSS   K
Sbjct: 1   MIQQSIASKFCEYSLGNCKMDLPNRDKQLTVAVKKTALRDLQNDNKIMVPTSVGSSSFFK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTA-NGHLVYVRRKSDADIGKNSPSDN 120
           ++   +D  +VSG KR     P +  HL  SPSN A NGHLVYVRRKS+A++ K +  +N
Sbjct: 61  DKDLGTDSSRVSGTKRPLSDYPLN-HHLQQSPSNNAANGHLVYVRRKSEAELSKGTAFEN 120

Query: 121 TSIKADYPNLNKLGQVAETAHLNSQVKELQN------HCFQAFAPFPMVSPMNAPGKPSV 180
            SI A  P+  +L    ETA   SQ KE          CF AFAPFPM S MN+ GKPSV
Sbjct: 121 PSIDAYCPHSRQLCCGEETAQPKSQTKEPPQLKEPKVSCFPAFAPFPMASSMNSSGKPSV 180

Query: 181 PHHVGKYGINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHD 240
           P  +GK  + LA  ES + +A S   + G P G KNL WE+RY QLQ+ L KLDQSDQ +
Sbjct: 181 PISLGKSAMKLAPVESNYVTASSGPTTIGNPKGLKNLHWEERYQQLQMFLRKLDQSDQEE 240

Query: 241 YLQVLRSLSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDG 296
           Y+Q+LRSLSSVELS+HAVELEKRSIQLSLEEAKELQRV VLNVLG  VKN KAP  H + 
Sbjct: 241 YIQMLRSLSSVELSKHAVELEKRSIQLSLEEAKELQRVAVLNVLGKSVKNFKAPADHDEC 300

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BLAST of ClCG02G009960 vs. TrEMBL
Match: A0A061E594_THECC (Integral membrane protein hemolysin-III, putative isoform 1 OS=Theobroma cacao GN=TCM_006456 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.4e-77
Identity = 161/294 (54.76%), Postives = 205/294 (69.73%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQ+ +DSKFSEYG  N   + P+ +KQ  + AKKT LRDLQN+NR+  PN TGSSP  K
Sbjct: 1   MVQQRIDSKFSEYGLRNPENNSPTCDKQPPVGAKKTPLRDLQNENRI-VPNSTGSSPFSK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           +RG   D IK SG KR SP CP SPSH  S  ++ A+GHLVYVRRKS+A++GK+S  D T
Sbjct: 61  DRGPVIDPIKFSGTKRPSPECPVSPSHCQSRSNSAASGHLVYVRRKSEAELGKSSAFDGT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SI ++   L ++GQ+ E     +Q+KE +  CF AFAP PM S  ++  KPSV   +GK 
Sbjct: 121 SI-SNCQQLTQVGQMEEINQKRAQIKEPKVSCFPAFAPLPMASLTSSSAKPSVLLPLGKS 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
            + LA++ES  + A S       P G K L WE+RY++LQ+ L  LDQS+Q DY+Q+LRS
Sbjct: 181 AMRLASSESNQQPAVSAASLLDSPKGNKKLHWEERYYELQMFLKMLDQSNQEDYIQMLRS 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDGS 295
           LS+V LSRHA+ELEKRSIQLSLEEAKE+QRVG+LNVLG  +K  KAP +  D S
Sbjct: 241 LSAVGLSRHAIELEKRSIQLSLEEAKEMQRVGILNVLGKTMKVAKAPSSQPDQS 292

[Close]

BLAST of ClCG02G009960 vs. TrEMBL
Match: A0A0B0MFN2_GOSAR (Translation initiation factor IF-2 OS=Gossypium arboreum GN=F383_11826 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-75
Identity = 161/294 (54.76%), Postives = 197/294 (67.01%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQ+++D KFSEYG  N   + P  +KQ    AKKT LRDLQN+NR+  PN  GSSP  K
Sbjct: 1   MVQQTVDPKFSEYGMLNPENNSPICDKQPPAGAKKTPLRDLQNENRI-VPNSAGSSPFPK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           +RG   D IKVSG KR SP CP SPS   S  S  ANGHLVYVRRK +A++GK+S  D T
Sbjct: 61  DRGPGIDPIKVSGTKRPSPECPVSPSQCQSPSSCAANGHLVYVRRKCEAELGKSSVFDYT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           S  ++   + ++ Q  E+  L SQ+KEL+  CF A AP PM S   +  KPSVP   GK 
Sbjct: 121 ST-SNCQQMRQVRQPEESNKLKSQIKELRVPCFPALAPLPMASLTRSSSKPSVPLPPGKS 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
            + L  +ES      +T P      G + L WE+RY+QLQ+LL KLDQSDQ DY+Q+LR 
Sbjct: 181 AMKLTPSESSQHPVVTTSPLLDSLKGIRKLHWEERYYQLQMLLKKLDQSDQEDYIQMLRC 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDGS 295
           LS+VELSRHA+ELEKRSIQLSLEEAKELQRV +LNV+G  +K +KAP T  D S
Sbjct: 241 LSAVELSRHAIELEKRSIQLSLEEAKELQRVSILNVMGRTMKMVKAPSTQPDQS 292

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BLAST of ClCG02G009960 vs. TAIR10
Match: AT4G38280.1 (AT4G38280.1 BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1))

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-23
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 195 PSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRSLSSVELSRHAVELE 254
           PS+   E  P   K L WE+RY  LQ+LLNKL+QSD+ D++Q+L SLSS ELS+HAV+LE
Sbjct: 76  PSSPAQEPTPTSHK-LDWEERYLHLQMLLNKLNQSDRTDHVQMLWSLSSAELSKHAVDLE 135

Query: 255 KRSIQLSLEEAKELQRVGVLNVLGNPVKNIKA 287
           KRSIQ SLEEA+E+QRV  LN+LG  V ++K+
Sbjct: 136 KRSIQFSLEEAREMQRVAALNMLGRSVNSLKS 166

[Close]

BLAST of ClCG02G009960 vs. TAIR10
Match: AT2G45250.2 (AT2G45250.2 Integral membrane protein hemolysin-III homolog)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 194 APSTVPS--------EGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRSLSSVE 253
           AP  +PS        E  P   K L WE+RY  LQ+LLNKL+QSD+ D++Q+L SLSS E
Sbjct: 101 APPQIPSSPAQAQAQEPTPTSHK-LDWEERYLHLQMLLNKLNQSDRTDHVQMLWSLSSAE 160

Query: 254 LSRHAVELEKRSIQLSLEE 265
           LS+HAV+LEKRSIQ SLEE
Sbjct: 161 LSKHAVDLEKRSIQFSLEE 178

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BLAST of ClCG02G009960 vs. NCBI nr
Match: gi|449444415|ref|XP_004139970.1| (PREDICTED: uncharacterized protein LOC101211824 isoform X1 [Cucumis sativus])

HSP 1 Score: 505.0 bits (1299), Expect = 9.0e-140
Identity = 256/296 (86.49%), Postives = 264/296 (89.19%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQKS+DSKFSEYGHGN GKD+PSQEKQLQISAKKTA RDLQNDN   A NCTGSSPLLK
Sbjct: 1   MVQKSIDSKFSEYGHGNFGKDVPSQEKQLQISAKKTASRDLQNDNMAIASNCTGSSPLLK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           E GT SDIIKVSGNKRA PV PASPSHLHSS SN+ANGHLVYVRRKSDADIGKNS  DNT
Sbjct: 61  EIGTGSDIIKVSGNKRALPVYPASPSHLHSSTSNSANGHLVYVRRKSDADIGKNSSCDNT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SIKA+YPNLNKLG +A T HL SQ KELQNHC QAFAPFPMVS +NAP KPSVPHH+GK 
Sbjct: 121 SIKANYPNLNKLGSLAVTVHLKSQAKELQNHCVQAFAPFPMVSSVNAPRKPSVPHHMGKC 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
           GINLA AES F SAPST PS GIP+GWKNLQWEDRYHQLQLLLNKLDQSDQ DYLQVL S
Sbjct: 181 GINLAVAESNFHSAPSTFPSVGIPVGWKNLQWEDRYHQLQLLLNKLDQSDQRDYLQVLGS 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDGSET 297
           LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIK  LTHQD SET
Sbjct: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKVSLTHQDSSET 296

[Close]

BLAST of ClCG02G009960 vs. NCBI nr
Match: gi|700191456|gb|KGN46660.1| (hypothetical protein Csa_6G118870 [Cucumis sativus])

HSP 1 Score: 449.5 bits (1155), Expect = 4.5e-123
Identity = 227/264 (85.98%), Postives = 235/264 (89.02%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQKS+DSKFSEYGHGN GKD+PSQEKQLQISAKKTA RDLQNDN   A NCTGSSPLLK
Sbjct: 1   MVQKSIDSKFSEYGHGNFGKDVPSQEKQLQISAKKTASRDLQNDNMAIASNCTGSSPLLK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           E GT SDIIKVSGNKRA PV PASPSHLHSS SN+ANGHLVYVRRKSDADIGKNS  DNT
Sbjct: 61  EIGTGSDIIKVSGNKRALPVYPASPSHLHSSTSNSANGHLVYVRRKSDADIGKNSSCDNT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SIKA+YPNLNKLG +A T HL SQ KELQNHC QAFAPFPMVS +NAP KPSVPHH+GK 
Sbjct: 121 SIKANYPNLNKLGSLAVTVHLKSQAKELQNHCVQAFAPFPMVSSVNAPRKPSVPHHMGKC 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
           GINLA AES F SAPST PS GIP+GWKNLQWEDRYHQLQLLLNKLDQSDQ DYLQVL S
Sbjct: 181 GINLAVAESNFHSAPSTFPSVGIPVGWKNLQWEDRYHQLQLLLNKLDQSDQRDYLQVLGS 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEE 265
           LSSVELSRHAVELEKRSIQLSLEE
Sbjct: 241 LSSVELSRHAVELEKRSIQLSLEE 264

[Close]

BLAST of ClCG02G009960 vs. NCBI nr
Match: gi|778712630|ref|XP_011656915.1| (PREDICTED: uncharacterized protein LOC101211824 isoform X2 [Cucumis sativus])

HSP 1 Score: 444.1 bits (1141), Expect = 1.9e-121
Identity = 229/296 (77.36%), Postives = 237/296 (80.07%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQKS+DSKFSEYGHGN GKD+PSQEKQLQISAKKTA RDLQNDN   A NCTGSSPLLK
Sbjct: 1   MVQKSIDSKFSEYGHGNFGKDVPSQEKQLQISAKKTASRDLQNDNMAIASNCTGSSPLLK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           E GT SDIIKVSGNKRA PV PASPSHLHSS SN+ANGHLVYVRRKSDADIGKNS  DNT
Sbjct: 61  EIGTGSDIIKVSGNKRALPVYPASPSHLHSSTSNSANGHLVYVRRKSDADIGKNSSCDNT 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SIKA+YPNLNKLG +A T HL SQ KELQNHC QAFAPFPMVS +NAP KPSVPHH+GK 
Sbjct: 121 SIKANYPNLNKLGSLAVTVHLKSQAKELQNHCVQAFAPFPMVSSVNAPRKPSVPHHMGKC 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
           GINLA AES F SAPST PS GIP+GWKNLQWEDRYHQLQLLLNKLDQSDQ DYLQ    
Sbjct: 181 GINLAVAESNFHSAPSTFPSVGIPVGWKNLQWEDRYHQLQLLLNKLDQSDQRDYLQ---- 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDGSET 297
                                   AKELQRVGVLNVLGNPVKNIK  LTHQD SET
Sbjct: 241 ------------------------AKELQRVGVLNVLGNPVKNIKVSLTHQDSSET 268

[Close]

BLAST of ClCG02G009960 vs. NCBI nr
Match: gi|356516156|ref|XP_003526762.1| (PREDICTED: uncharacterized protein LOC100803861 [Glycine max])

HSP 1 Score: 303.9 bits (777), Expect = 3.0e-79
Identity = 168/302 (55.63%), Postives = 205/302 (67.88%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           M+Q+S+ SKF EY  GN   D+P+++KQL ++ KKTALRDLQNDN++  P   GSS   K
Sbjct: 1   MIQQSIASKFCEYSLGNCKMDLPNRDKQLTVAVKKTALRDLQNDNKIMVPTSVGSSSFFK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTA-NGHLVYVRRKSDADIGKNSPSDN 120
           ++   +D  +VSG KR     P +  HL  SPSN A NGHLVYVRRKS+A++ K +  +N
Sbjct: 61  DKDLGTDSSRVSGTKRPLSDYPLN-HHLQQSPSNNAANGHLVYVRRKSEAELSKGTAFEN 120

Query: 121 TSIKADYPNLNKLGQVAETAHLNSQVKELQN------HCFQAFAPFPMVSPMNAPGKPSV 180
            SI A  P+  +L    ETA   SQ KE          CF AFAPFPM S MN+ GKPSV
Sbjct: 121 PSIDAYCPHSRQLCCGEETAQPKSQTKEPPQLKEPKVSCFPAFAPFPMASSMNSSGKPSV 180

Query: 181 PHHVGKYGINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHD 240
           P  +GK  + LA  ES + +A S   + G P G KNL WE+RY QLQ+ L KLDQSDQ +
Sbjct: 181 PISLGKSAMKLAPVESNYVTASSGPTTIGNPKGLKNLHWEERYQQLQMFLRKLDQSDQEE 240

Query: 241 YLQVLRSLSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVKNIKAPLTHQDG 296
           Y+Q+LRSLSSVELS+HAVELEKRSIQLSLEEAKELQRV VLNVLG  VKN KAP  H + 
Sbjct: 241 YIQMLRSLSSVELSKHAVELEKRSIQLSLEEAKELQRVAVLNVLGKSVKNFKAPADHDEC 300

[Close]

BLAST of ClCG02G009960 vs. NCBI nr
Match: gi|1009150479|ref|XP_015893039.1| (PREDICTED: uncharacterized protein LOC107427191 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 298.9 bits (764), Expect = 9.8e-78
Identity = 164/298 (55.03%), Postives = 208/298 (69.80%), Query Frame = 1


Query: 1   MVQKSLDSKFSEYGHGNSGKDMPSQEKQLQISAKKTALRDLQNDNRVRAPNCTGSSPLLK 60
           MVQ+++DSK++E+G GN+  D+P+++KQL +  KK  LRDLQNDNR+  PN   +S LLK
Sbjct: 1   MVQQTVDSKYNEHGLGNTETDLPTRDKQLPVGIKKPVLRDLQNDNRIAVPNSIENSSLLK 60

Query: 61  ERGTSSDIIKVSGNKRASPVCPASPSHLHSSPSNTANGHLVYVRRKSDADIGKNSPSDNT 120
           +RG   + +K SG+KR+S  C   PS   S  SN ANGHLVYVRRKS+ ++GK+S  D+T
Sbjct: 61  DRGPVHNSVKFSGSKRSSSECAEIPSQQQSPNSNAANGHLVYVRRKSEVELGKSSTCDST 120

Query: 121 SIKADYPNLNKLGQVAETAHLNSQVKELQNHCFQAFAPFPMVSPMNAPGKPSVPHHVGKY 180
           SI A  PN  +     ET       KE Q  CF AFA FP+ S M + GKPSVP  +GK 
Sbjct: 121 SISAYCPNSKQFVNQQET-------KEPQGSCFPAFASFPVASSMISSGKPSVPLPLGKS 180

Query: 181 GINLATAESIFRSAPSTVPSEGIPIGWKNLQWEDRYHQLQLLLNKLDQSDQHDYLQVLRS 240
           G+ L +AE+I+    S+  S G   G K+L WE+RY QLQL+L KLDQSDQ DYLQ+LRS
Sbjct: 181 GMRLGSAETIYHPFTSSASSLGNQKGPKSLHWEERYRQLQLMLKKLDQSDQDDYLQMLRS 240

Query: 241 LSSVELSRHAVELEKRSIQLSLEEAKELQRVGVLNVLGNPVK-NIKAPL--THQDGSE 296
           LSS ELSRHAVELEKRSIQLSLEEAKE+QRV +L+V+G  +K  +K P+  THQD  E
Sbjct: 241 LSSAELSRHAVELEKRSIQLSLEEAKEMQRVCMLDVIGLSMKVGVKTPVPTTHQDRVE 291

The following BLAST results are available for this feature:

BLAST of ClCG02G009960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB4_CUCSA	3.1e-123	85.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118870 PE=4 SV=1	[more]
I1K6V1_SOYBN	2.1e-79	55.63	Uncharacterized protein OS=Glycine max GN=GLYMA_06G000500 PE=4 SV=1	[more]
A0A0B2QIB8_GLYSO	2.1e-79	55.63	Uncharacterized protein OS=Glycine soja GN=glysoja_014542 PE=4 SV=1	[more]
A0A061E594_THECC	3.4e-77	54.76	Integral membrane protein hemolysin-III, putative isoform 1 OS=Theobroma cacao G...	[more]
A0A0B0MFN2_GOSAR	2.4e-75	54.76	Translation initiation factor IF-2 OS=Gossypium arboreum GN=F383_11826 PE=4 SV=1	[more]

BLAST of ClCG02G009960 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38280.1	4.3e-23	59.78	BEST Arabidopsis thaliana protein match is: Integral membrane protei...	[more]
AT2G45250.2	1.5e-15	58.23	Integral membrane protein hemolysin-III homolog	[more]

BLAST of ClCG02G009960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444415\|ref\|XP_004139970.1\|	9.0e-140	86.49	PREDICTED: uncharacterized protein LOC101211824 isoform X1 [Cucumis sativus]	[more]
gi\|700191456\|gb\|KGN46660.1\|	4.5e-123	85.98	hypothetical protein Csa_6G118870 [Cucumis sativus]	[more]
gi\|778712630\|ref\|XP_011656915.1\|	1.9e-121	77.36	PREDICTED: uncharacterized protein LOC101211824 isoform X2 [Cucumis sativus]	[more]
gi\|356516156\|ref\|XP_003526762.1\|	3.0e-79	55.63	PREDICTED: uncharacterized protein LOC100803861 [Glycine max]	[more]
gi\|1009150479\|ref\|XP_015893039.1\|	9.8e-78	55.03	PREDICTED: uncharacterized protein LOC107427191 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018737	DREAM_LIN52

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0007049	cell cycle

Vocabulary: **Cellular Component**
Term	Definition
GO:0070176	DRM complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0070176	DRM complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G009960.1	ClCG02G009960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018737	Protein LIN52	PFAM	PF10044	LIN52	coord: 186..277 score: 1.
None	No IPR available	PANTHER	PTHR34555	FAMILY NOT NAMED	coord: 1..295 score: 3.5
None	No IPR available	PANTHER	PTHR34555:SF1	INTEGRAL MEMBRANE PROTEIN HEMOLYSIN-III LIKE PROTEIN	coord: 1..295 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G009960	Cla97C02G036130	Watermelon (97103) v2	wcgwmbB138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None