ClCG02G009910 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G009910
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNiemann-Pick C1 protein
LocationCG_Chr02 : 15925402 .. 15928846 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACAGATTTATATTATTTGGTTCTTCTGTTGAGGAGGTTTTAGCATTTTTTGGATTGCTATTTATTCCCTTTGTATTCCTTCTTAGTTCTTTTATTTCCTTAGTGGAGCTGTTTGAGCATTAGTCTATCAATAAAAATTTCTCGTTTCATGTTTTGAAGAAAAAGTGATAAGAAATTTTATCCTTAAATCATGTAAGGAGATTTAAAACATAGTTATTGTTACTAAAATTTTATCTTCTGTTTTTTTGCCCTTAAAATTTTGAAATTTTAATTTTGGTCATTGAACTATTATCCACTTTCTATGTTGGGTCTTGGGATAATTGAATGCACATTGCTCCAACTTACATTGACAGGAGGAACTGCTGCCACTAGTGCAGTCCAGGAACCTTACTCTTTCTTTTTCATCTGAGAGCTCGATTGAGGAGGAACTGAAAAGAGAAAGCACCGCAGATATCCTGACAATTGCTGTAAGTCGGTGAAGAGTGGTATCTTTTTGGTTTGATTTTAGCAAGATATAATGTAAATAATACAGTTCTGTCTTAGGTATCATTCAATTTATCAACCTGTTGTATTTTAAGCATTTATTTAATTAAATCGTTTTGTTTATTTTAAGCCTTTATTCTCTAACATTTATCAGGTAAGCTACCTCGTTATGTTTGCCTATATATCAGTGGCTTTGGGAGATTCAAATATTTCGTCTTCTTTCTACCTTTCATCCAAGGTGAGTGTCGTACTAATGTTTGATTATTTTCTCTTAAAAGTATGGCTGACTTGTGGTTTACTTTCACTTGTGCAACTTGCTTCTGTTTATGGAGCCTGGTAATTAACTGGTCATTATTCTACATCATTAATAATTACCAACATCTTTGCCTCTAAGGGAACAACAAAAGGTAGCTTGAGGTGCTTCGGAGAAGTCCTCTGAGAAGGGGAGATATATTATTTACTCAGTAATTCACAAATATACAAAAGAAGGATATGAAAATTGAATGATAGTAAAATCATTAAAAAAAGAACAATGAACAAAGAAAAATCCACCATCTCTTCAGGAGAGGGGTCAGTTCAACATAATATACAAAGAAAAAAAAAACAAAAAAAAAAAAGTAAAGACATGGAAGAAACTACAGAAGGGAGAATATTTGAAGCACAAACTTGTTCTTGATTGTCTTTGTTCTGCACTCCATTCTCTCATGGCTGTTGTTTAAAATGAAAAATTTCTCTAATTTATATTTTGGATGGGAGGGGGACTGAATTTCTCCTCATCACCTTGCCTTGCCCTTTGGTCATTTCTATTCTAGCTGTTTATACTTAGTTTGCATTTGTGGAATTGATGCATACTTTCTCATTAATGCTAGATTAGGTTTATAATTGGATGAGTCTGCTCCCTTTAATTTTCTATTAAAAAAAAATATTGTTGATATATTAAATTTTTGGTTAAATTATACAAAAACCCTTGAACTTTTAGGTAGGTTTCAATCACCTCGAGACTTTGAAGATTTTCATTTAACCCTTGAACTTTGAAATTGTCCCCAAATATGCCCTTGTAGTGTTTTTCCAGTAAGACCTAGGTTGAAAATTGATGTGACATTCATTTGTACAAATTGGAATGCATAGGTGACATAATTTACAACTTAATTTTGTTATTACCATTAACTTCAACTCAAATGATATTGTTGACATCATTCACAGTAACATTCACATAATCGATTTTTATACACTAGCTGTCACGTTAATTTACTTGAATGATGTAGTGCGTTAGGTACCCGTACCAGATCAATTTCCATTAATCATTTTGATGAAAAAGTTCTCCATATTTTTTTGAAATAATTTCAGAGCTAAAGTGAAACTATTCGAAGTCTAGGGGTATAATTGAACTGACACCATACTTCCATTTTTTTATTTTATAATTTTATGTTGATTTTAGAAAATATTATCTTTTTTTCTTTTTCATTTTTTAATTTCTAAATCCTCTCTTTTGCAAAAAACGGTGTATTTGGGAATTTTGAAACCAAAAGTCCAAAAAGAATCAACATTCTTACTTGGATTATATTACACAGCAACCTATACGTTACAAATGCCTCAAAAAGAGGTGTTTTTGTGTTATGCAGACTTGGCAGGACATCATTTGTTCTTTGGCTGCCTGGCATAAATTGTTTTTTCTTTTTTTAGATTACATTGGTTTCTTACAAATGACAAAGAGTAATCTCCATTCTTTTGTTGGTCCCACTTGCCTTCAAATTTTCACTTTTATGGGTTAATGGAGTCGAAACTATTATTTTGGAGATTTGGATGGGACACATACAGAACCATAGGACCATTTAAGAATAAGAAACATTGTTAGGTTGATTGTTTTGGACTAGTATTAAGTGCTTCACAATGGTTTTCTTTATCTAAGGCAATTATTGATTTCTCTATCCAGGATATTTGTTTAAGTTGGGATACGTTCATATTCCCATTTAGTTTACTCTGCTTCTTTTTCTTTTCCTTTATCCACTCTCAGAGTTTTAATCTTTGAACATTTGTTTCTTTACAGTATTTGAATGAAATTTTTGTTTCTGGTGATTAAATTAAATTTTTTTTTTATATTAATTTAAGATATTTTATTAAAACTTGTAGATTTAATTTTCATGAGGTCGTTAATTATCATTTAAAAAATAAGGTTTATTTTAGCTTTAGAAATGTTATGAACTAAAATTAAAAGTTTCTCTCTTTTTAAGCCTTTTAGTGTAAGTTATACATGGTCATAGTTTAAGTTAACTAACTGGTGGGATTTGACTTCCCATTCATATTTTTGTAGTCTGCTGTTAATTTTATACCCTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTCTGTTGATGAATGTTATAGGTTTTACGTAGGGAAGTATAATATTATTTCTCCTTGTTACAGATTTGATCTTAAACTAAACGTCAACTGCATGTTGCTTTTTTGCTTGATTGTGTTTCCACCGATCTCAGACAGTGCTCTCCGTTTTGAAATCTCAGGTGTTGCTTGGCCTCTCAGGAGTTATACTTGTCGTGCTGTCTGTCCTAGGATCTGTTGGATTCTTCAGTGCCATAGGAGTAAAATCAACATTAATAATTATGGAGNCCCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTCTGTTGATGAATGTTATAGGTTTTACGTAGGGAAGTATAATATTATTTCTCCTTGTTACAGATTTGATCTTAAACTAAACGTCAACTGCATGTTGCTTTTTTGCTTGATTGTGTTTCCACCGATCTCAGACAGTGCTCTCCGTTTTGAAATCTCAGGTGTTGCTTGGCCTCTCAGGAGTTATACTTGTCGTGCTGTCTGTCCTAGGATCTGTTGGATTCTTCAGTGCCATAGGAGTAAAATCAACATTAATAATTATGGAGGTTATTCCATTCCTGGTCTTGGCGGT

mRNA sequence

ATGAAGAACAGATTTATATTATTTGGTTCTTCTGTTGAGGAGGAGGAACTGCTGCCACTAGTGCAGTCCAGGAACCTTACTCTTTCTTTTTCATCTGAGAGCTCGATTGAGGAGGAACTGAAAAGAGAAAGCACCGCAGATATCCTGACAATTGCTGTAAGCTACCTCGTTATGTTTGCCTATATATCAGTGGCTTTGGGAGATTCAAATATTTCGTCTTCTTTCTACCTTTCATCCAAGTCCAAAAAGAATCAACATTCTTACTTGGATTATATTACACAGCAACCTATACGTTACAAATGCCTCAAAAAGAGGTGTTTTTGTGTTATGCAGACTTGGCAGGACATCATTTGTTCTTTGGCTGCCTGGCATAAATTGTTTTTTCTTTTTTTAGATTACATTGGTTTCTTACAAATGACAAAGAGTAATCTCCATTCTTTTGTTGGTCCCACTTGCCTTCAAATTTTCACTTTTATGGTATTAAGTGCTTCACAATGGTTTTCTTTATCTAAGGCAATTATTGATTTCTCTATCCAGGATATTTGTTTAAGTTGGGATACATTTGATCTTAAACTAAACGTCAACTGCATGTTGCTTTTTTGCTTGATTGTGTTTCCACCGATCTCAGACAGTGCTCTCCGTTTTGAAATCTCAGGTGTTGCTTGGCCTCTCAGGAGTTATACTTGTCGTGCTGTCTGTCCTAGGATCTGTTGGATTCTTCAGTGCCATAGGAGTAAAATCAACATTAATAATTATGGAGGTTATTCCATTCCTGGTCTTGGCGGT

Coding sequence (CDS)

ATGAAGAACAGATTTATATTATTTGGTTCTTCTGTTGAGGAGGAGGAACTGCTGCCACTAGTGCAGTCCAGGAACCTTACTCTTTCTTTTTCATCTGAGAGCTCGATTGAGGAGGAACTGAAAAGAGAAAGCACCGCAGATATCCTGACAATTGCTGTAAGCTACCTCGTTATGTTTGCCTATATATCAGTGGCTTTGGGAGATTCAAATATTTCGTCTTCTTTCTACCTTTCATCCAAGTCCAAAAAGAATCAACATTCTTACTTGGATTATATTACACAGCAACCTATACGTTACAAATGCCTCAAAAAGAGGTGTTTTTGTGTTATGCAGACTTGGCAGGACATCATTTGTTCTTTGGCTGCCTGGCATAAATTGTTTTTTCTTTTTTTAGATTACATTGGTTTCTTACAAATGACAAAGAGTAATCTCCATTCTTTTGTTGGTCCCACTTGCCTTCAAATTTTCACTTTTATGGTATTAAGTGCTTCACAATGGTTTTCTTTATCTAAGGCAATTATTGATTTCTCTATCCAGGATATTTGTTTAAGTTGGGATACATTTGATCTTAAACTAAACGTCAACTGCATGTTGCTTTTTTGCTTGATTGTGTTTCCACCGATCTCAGACAGTGCTCTCCGTTTTGAAATCTCAGGTGTTGCTTGGCCTCTCAGGAGTTATACTTGTCGTGCTGTCTGTCCTAGGATCTGTTGGATTCTTCAGTGCCATAGGAGTAAAATCAACATTAATAATTATGGAGGTTATTCCATTCCTGGTCTTGGCGGT

Protein sequence

MKNRFILFGSSVEEEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISSSFYLSSKSKKNQHSYLDYITQQPIRYKCLKKRCFCVMQTWQDIICSLAAWHKLFFLFLDYIGFLQMTKSNLHSFVGPTCLQIFTFMVLSASQWFSLSKAIIDFSIQDICLSWDTFDLKLNVNCMLLFCLIVFPPISDSALRFEISGVAWPLRSYTCRAVCPRICWILQCHRSKININNYGGYSIPGLGG
Homology
[Close]
BLAST of ClCG02G009910 vs. Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-09
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 14  EEELLPLVQSR---NLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSN 73
           E+E +  V++    NLT+SF++E SIE+EL RES +D+ T+ +SY+VMF YIS+ALG   
Sbjct: 584 EKEFISFVKNYKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVVMFLYISLALGHIQ 643

Query: 74  ISSSFYLSSK 81
             S   + SK
Sbjct: 644 SCSRLLVDSK 653

[Close]
BLAST of ClCG02G009910 vs. Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-09
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 25  NLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISSSFYLSSK 81
           NLT+SF +E SIE+EL RES +D+ TI +SY +MF YIS+ALG     S   + SK
Sbjct: 598 NLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRLLVDSK 653

[Close]
BLAST of ClCG02G009910 vs. Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 14  EEELLPLVQSR---NLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSN 73
           E+E +  V++    NLT+SF++E SIE+EL RES +D+ T+ +SY +MF YIS+ALG   
Sbjct: 584 EKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMK 643

Query: 74  ISSSFYLSSK 81
                 + SK
Sbjct: 644 SCRRLLVDSK 653

[Close]
BLAST of ClCG02G009910 vs. TrEMBL
Match: A0A0D2QGE6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLPLVQSRNL+LSFSSESSIEEELKRESTADI+TIAVSYLVMFAYIS+ LGD++  S
Sbjct: 594 KEELLPLVQSRNLSLSFSSESSIEEELKRESTADIITIAVSYLVMFAYISITLGDASRLS 653

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 654 TFYISSK 660

[Close]
BLAST of ClCG02G009910 vs. TrEMBL
Match: A0A0D2R9Z1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLPLVQSRNL+LSFSSESSIEEELKRESTADI+TIAVSYLVMFAYIS+ LGD++  S
Sbjct: 594 KEELLPLVQSRNLSLSFSSESSIEEELKRESTADIITIAVSYLVMFAYISITLGDASRLS 653

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 654 TFYISSK 660

[Close]
BLAST of ClCG02G009910 vs. TrEMBL
Match: A0A0D2MDS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLPLVQSRNL+LSFSSESSIEEELKRESTADI+TIAVSYLVMFAYIS+ LGD++  S
Sbjct: 594 KEELLPLVQSRNLSLSFSSESSIEEELKRESTADIITIAVSYLVMFAYISITLGDASRLS 653

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 654 TFYISSK 660

[Close]
BLAST of ClCG02G009910 vs. TrEMBL
Match: U5GJJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s27320g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1 

Query: 9   GSSVEEEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGD 68
           G++  E ELLP+VQS+NLTLSFSSESSIEEELKRESTAD++TI +SYLVMFAYIS+ LGD
Sbjct: 560 GNNYSENELLPMVQSKNLTLSFSSESSIEEELKRESTADVITILISYLVMFAYISLTLGD 619

Query: 69  SNISSSFYLSSK 81
           +   SSFY+SSK
Sbjct: 620 APHLSSFYISSK 631

[Close]
BLAST of ClCG02G009910 vs. TrEMBL
Match: A0A061DX98_THECC (Hedgehog receptor, putative isoform 3 OS=Theobroma cacao GN=TCM_006451 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.5e-20
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLP+VQSRNLTLSFSSESSIEEELKRESTADI+TI VSYLVMF YISV LGD+   S
Sbjct: 640 KEELLPMVQSRNLTLSFSSESSIEEELKRESTADIVTIVVSYLVMFVYISVTLGDAPHLS 699

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 700 TFYISSK 706

[Close]
BLAST of ClCG02G009910 vs. TAIR10
Match: AT1G42470.1 (AT1G42470.1 Patched family protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 51/67 (76.12%), Postives = 60/67 (89.55%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           ++ELLP+VQ++NLTLSFSSESSIEEELKRESTAD++TIA+SYLVMFAYIS+ LGDS    
Sbjct: 563 KDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIAISYLVMFAYISLTLGDSPRLK 622

Query: 74  SFYLSSK 81
           SFY++SK
Sbjct: 623 SFYITSK 629

[Close]
BLAST of ClCG02G009910 vs. TAIR10
Match: AT4G38350.2 (AT4G38350.2 Patched family protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-21
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLP+V+S+NL+LSFSSESSIEEELKRESTAD++TIA SYLVMF YISV LGD+    
Sbjct: 600 KEELLPMVRSKNLSLSFSSESSIEEELKRESTADVITIAASYLVMFVYISVTLGDAPQFY 659

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 660 TFYISSK 666

[Close]
BLAST of ClCG02G009910 vs. NCBI nr
Match: gi|659094691|ref|XP_008448193.1| (PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EEL+PLV SRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS
Sbjct: 603 KEELMPLVHSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 662

Query: 74  SFYLSSK 81
           SFYLSSK
Sbjct: 663 SFYLSSK 669

[Close]
BLAST of ClCG02G009910 vs. NCBI nr
Match: gi|659094693|ref|XP_008448194.1| (PREDICTED: Niemann-Pick C1 protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EEL+PLV SRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS
Sbjct: 603 KEELMPLVHSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 662

Query: 74  SFYLSSK 81
           SFYLSSK
Sbjct: 663 SFYLSSK 669

[Close]
BLAST of ClCG02G009910 vs. NCBI nr
Match: gi|778712679|ref|XP_011656920.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 7.2e-24
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EEL+PLV S+NLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS
Sbjct: 604 KEELMPLVHSKNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 663

Query: 74  SFYLSSK 81
           SFYLSSK
Sbjct: 664 SFYLSSK 670

[Close]
BLAST of ClCG02G009910 vs. NCBI nr
Match: gi|778712664|ref|XP_011656917.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 7.2e-24
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EEL+PLV S+NLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS
Sbjct: 604 KEELMPLVHSKNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 663

Query: 74  SFYLSSK 81
           SFYLSSK
Sbjct: 664 SFYLSSK 670

[Close]
BLAST of ClCG02G009910 vs. NCBI nr
Match: gi|763748548|gb|KJB15987.1| (hypothetical protein B456_002G206800 [Gossypium raimondii])

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 14  EEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNISS 73
           +EELLPLVQSRNL+LSFSSESSIEEELKRESTADI+TIAVSYLVMFAYIS+ LGD++  S
Sbjct: 594 KEELLPLVQSRNLSLSFSSESSIEEELKRESTADIITIAVSYLVMFAYISITLGDASRLS 653

Query: 74  SFYLSSK 81
           +FY+SSK
Sbjct: 654 TFYISSK 660

The following BLAST results are available for this feature:
BLAST of ClCG02G009910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NPC1_MOUSE2.3e-0947.14Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2[more]
NPC1_PIG8.6e-0953.57Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1[more]
NPC1_HUMAN1.9e-0844.29Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2[more]
BLAST of ClCG02G009910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2QGE6_GOSRA6.8e-2183.58Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1[more]
A0A0D2R9Z1_GOSRA6.8e-2183.58Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1[more]
A0A0D2MDS7_GOSRA6.8e-2183.58Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206800 PE=4 SV=1[more]
U5GJJ2_POPTR2.0e-2075.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s27320g PE=4 SV=1[more]
A0A061DX98_THECC7.5e-2082.09Hedgehog receptor, putative isoform 3 OS=Theobroma cacao GN=TCM_006451 PE=4 SV=1[more]
BLAST of ClCG02G009910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G42470.11.9e-2276.12 Patched family protein[more]
AT4G38350.23.6e-2174.63 Patched family protein[more]
BLAST of ClCG02G009910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094691|ref|XP_008448193.1|3.2e-2495.52PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo][more]
gi|659094693|ref|XP_008448194.1|3.2e-2495.52PREDICTED: Niemann-Pick C1 protein-like isoform X2 [Cucumis melo][more]
gi|778712679|ref|XP_011656920.1|7.2e-2494.03PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus][more]
gi|778712664|ref|XP_011656917.1|7.2e-2494.03PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus][more]
gi|763748548|gb|KJB15987.1|9.8e-2183.58hypothetical protein B456_002G206800 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G009910.1ClCG02G009910.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10796PATCHED-RELATEDcoord: 15..80
score: 6.1
NoneNo IPR availablePANTHERPTHR10796:SF117PATCHED FAMILY PROTEINcoord: 15..80
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G009910Watermelon (97103) v2wcgwmbB138
ClCG02G009910Watermelon (97103) v1wcgwmB202
ClCG02G009910Watermelon (97103) v1wcgwmB216