ClCG02G009850 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G009850
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding protein, putative
Location	CG_Chr02 : 15562776 .. 15581601 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTGGAATGTCAAGTATCATATAGCAATTATCAATCAATATCTACTTCCTTCAGCCCTGAGCAACAGTAAATACTATTGTGATTCATGGTGGCAGGCTGAAGCTTCTTGGTGAACTTTTAGCAGAGGGAAGGGCTACTAGACAAATTTAATAGTATAAATCTAAAGAGTGTATCTGTGTCCAGGAGGGATTTTGTGTTATCCTCATCTTTTCAGATGGAGGATGCTGCCACAAAAGATGCCATATCTAAGGACCATAGGAGTAAATATTATACTGAGGGTATGAGAGCTAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTACGGTGCTCTCTTACTAATATTTAATGTTTTCATCTTACATTATAATTTCTAATGTATTACTGTGCATGCTAGGTCTACAAATTCTTTAGGGTTGGGAGTAGTTGAAGTTGATGACTCTTTAATATATTATTTTCTTGAAAATTCAAGATGTTCTTTAAGTACTAGACTGTCGAACATTTGTATTAAAGTTTTCAGCATCTCCACAATTAGACATACAATAGTTTAAACGAGCCCCACAAAAGGTACTAAATCAACATTTTAGGTCTAGGCTTGTTCTACTCGAATCAAATATACTTCCTTGTTATATATAAATAATGTATATGAGAAAGGACATGCCAATTAGGGACATAAGTGAAAACTTAAAACTTCGTAAAAAATGAAGATAAAATTGGGGATTTACAGTGGTGGCTTAAAATTAACAAGAATGTAACATAAATAAGAGTTGGTGTGGGTTTAATGTAAGAAGCTGAATACTAGTGATGTGCTACTAAGGGAAAGCCCACATAGGGTTTTTATTTATTTATTTTTTATTTTTTTATTGAATTGATGGATTTTAATGCTACTCGACTCCAAAACTAGTAGAGGAAGGAAGCGATGATCGCTTGAGACTGTTAAGTGTAATCCTGTTAGCCAATGAAAGGACTACCTTTCTTAGACTTCAAGCAATGATACAGAGCTAATGTAATGAGACCCAAGAGGATCTTTACCTCCTCTTTTCCAGAGACTTCTATCTCGCCTCCATTTAATAAGTTCTTAGCACATTTGGTATTAGTTGGTTTTCTCCTAACATTGGTCTATCACATTTATAGCGTCTGTGTCATTATGGAAAATATGGCTTGAGAGGTATCTCTTCAACGTAGGAAATCGGATTCCAATTTCTATAAATCACTGGCCCACCAAATGGTCCGTGGGGATTCACCTACAAATTAAATTTGATCAGAGGCGATAGAATCCATTTTTGGGAGGAGGATTTGTGGATTGAAGATAGGGCGCTCAAGTTTTCTTTCCCAAGAATCCACAATATAACCTCTACAAAGAAGTTATTTTTTATTTTAATAATAAATAAGTGCTGGTCTGCTTCCTCAAATGGTTGGGTGGTGCTATTAAGAAGGAATTTTAAGAGATGTTGAGCCCTTGAATGGATGGATTTCCACAATGCTATAGAGACAATTCGAATGTCTAACAGAGAGGATTCCAAGTTGTGGATTTGATAAGATTCCAACCAAACTTTCTTATTGAATTTCATCAAAATTACAGCCCTACACTAGAACACAAGGAAACTGCCCTCAGTCTCCTTCCCCAACTGCTGTATAAGCAATTCCCGAAAACATAAAAACTGTCTTCCCCCTCTCACCTATTCCTCCCTTAACTACCTCCCTCCCCCACAATAAAACAAAGACATAAATAATTACTAATTAAATTAACTACTAATTAAGTTTGGCTAGAAGAAGCCACACTCCCACACACCATACCCTTCCCTTTATTTCTTTTTCTGCTGTAAGTTAATATTATAGGAGGTCTAACACTACTCTCCCCTTCAAGAGCCACCTTGTCCTCAAGGTGAAAATCTGGAAATTGTTGTTTGAAATCATCAAAAAGTTCCCAAGTCGCCTCATGGGTCGGCAACCCTTTCCATCCTACCAACACCTCCCAAACATTGGTTGTCGAATTCTTATGATATCCAAAAATCTCAGATGGTTCAGTTAACCGCTCATGGCTTTCCGACAATTGTTGCACCATAGGTTGAATAGTATGATGTTCTCCCAAAACCTTTTTCAACTGCGACACATGGAAAACCGGATGTATATGCCAATGATGGTAACTCTAAACGATACACGACCTCCCCAATTCTATCCAACACTTTAAAAGGCCCAAAATACTTAGGAGAAAGCTTCTCGTTCCGCCGTTGTTGCAAAGTTGACTGACGATATGGTCTAATCTTTATAAACACCCAATCTCCAACTTGATGCTCAACCTCACGCCTCCTCCTATCCGCATTTTTCTTCATCTTCTCTTGAGCCACTCGTAAATGCTCCTTCAATGCTCGTAATGCCACATCTCTCTCCTTCAATTGTTGATCTAATGTGGAATTAACAATAGTAGTATCTCCATAATATAAAAGAGGAGGTGGTAAACGACCATAAACTGCTTGAAATGGTGTAATACCGATGGAACTATGGTATGTGGTATTGTACCAATATTCAGCCCAATGTAACCACTCAACCCACTCCTTCGGCCTTTCACTACAAAAACATCTCAAATACGCCTCAACGCTACGATTCACCACTTCAGTTTGACCATCTGTTTGGGGATGATAAGCTGAACTTTGTCGTAATTTTGTACCTGCCAACTTGAATAACTCACGCCAGAAATGACTTAGAAAAACCTTATCTCTATCAGATACAATAGAACTCGGAAACCCATGTAGGCGCACGATCTCCTTTACAAATACTTCTGCTACCACCTTAGCATTGAATGGATGTTTCAGTGCAATAAAGTGACTATACTTACTCAATCTATCAACCACTACGTAAATAACATCATATTCCTTCGGTTTTGGTAATCCTTCAATGAAATCCATGGAAATATCACTCCAAATAACATCAGGAATCTCCAATGGCGTCAATAACCCAGCAGGGGATAAAGCTAGAGTCTTATTCCGTTGACACACTATACATTCTTCCACATACCGTTGAACGTCTCCTTTCATACCCTCCTAGTACAATTCATCGATCAATCTCTTATAAGTACGGAGATACCACGAATGCCCCCCAAATACAGAATCATGATAAATGTGTAACACCGTAGGAATAAGGGTAGAAGATCGAGATAATACCAGGCGTCCCTTGTATTTCAAAGTTCCCTGTTGCCACACAAAACCAAGAACACTCTCAACATCCTGCTCCAACTTTGCAATAATTTCCTGCAACTTCGGGTCATTGGAAACTTCGGTTTTAATAATCTCTACATCGATGATAGTAGGGGCTGATAAAGAAGCCAAATGGACAGTAGGTGGAATATGAGATAAAGCATCAGTAGCCTTGTTTTCCAACCCTGGTCGTAAACTACCTGGAAACCATAACCCAACAACTTTGCAATCCATTTCTGATGTTGTGGTTGTATCACTCTCTGCTCCAACAAAAACTTCAAAACCTGCTGATTAGTCTTCACAATAAACTTCCTACCCAACAAATAAGGTCTCTAACGTTGCACCGCCATCACTACGGCCATCAATTCTCTCTCATATACTGGTTTCCCCCTATCTCGTAGGGACAAAGTGTGACTATAATAAGCTATGGGCCTCCTCAATTGTGTCAAAACTGCCCCCAATCCAAAACCAGAAGCATCCGTTTCAACCTCAAAAGGTAAATCAAAATCAGGTAATGTCAAAACGGGCAATGTCATCATAGCATTTTTCAGACGTTCAAAAGCAACTTGCGCATCTGCATTCCATTCAAAGGCTCCCCCTTTCAACAACTGACTCAAAGGAGCTGCGAGGCTACCGTAATGATGAACAAAACGCCTATAATACCCAGTCAATCCCAAAAAACCATGCACCTCCCTGACGTTTGTAGGTACAGGCCATTCTAACATTGCTCGAACTTTTTCAGGATCTGCCTCTACACCTTTACCTGATATCTAATGCCCCAAATATTCCACCCTTTCCTTAGCAAACTGACATTTAGTCTTATTAGCATACAATTCATTGTCCCTCAATATCAGAAAGACTTTCTCCAAATGCTTAACATGATCCTCTACTGTTCGACTATAGACTGAAATGACATCAAAGAAAACTAGTACGAACCTACTCAAATATGGTTTAAAAATGGTATTCATAAGTGCTTGAAATGTTGATGGAGCATTAGTCAATCCAAATGGCATTACCAAAAACTCATAATGGCCCTCATGAGTCCGAAAAGCTGTTTTCTCCACATCTCTCGGGTACATTCTAATTTGATGATAACCCGACTTCAAATCGATCTTGGAAAATAATGTGGCACCATTCAATTCATCAAACAATTCTTCAATTACCGGAATGCAAAACTTATCAGGTATAGTAACATTATTCAAAGCTCGATAATCAACACAAAATCTCCAACCTCCGTCCTTCTTCTTAACCAACAAAACAGGACTCGAATACGGACTTGTGCTAGGACGAATAACTCCTGATGCTAACATTTCATCCACCAACTTCTCCATCTCCTCCTTTTGATGATAGGCGTATCTATAAGGTCTCACATTAACTGGATCCGTATCTATAAGGTCTCACATTAACTGGATCCGTGCCCTGCTTCAGATGGATGTGATGTTCAATACTCCTCCTTGGTGGTAATGTTTCCGGCCACTCAAACACATCAACAAAGGTATCTAGCACTGCTGGAATTGAATCAGAAATAGTATACACTTCATCGATACCATACCATTTAGCCAACGAAACTCCGCCCTCCATGAACCGACATTCGATGAGAAATCCCTGATTCGCTCTGTCCATGATCGTATCATACTTTTTAAACTCACCCGCGACTTTGTGAGACTAGAATCTCCCTTTAATACCACGGTCTTCCCATCCTGGTTAAATGACATTGTCAAATTCTGCCAATTAACTTTTGTCATTCCTAAAGTATGTAACCACTGCATGCCTAGTATTACATCCACTCCTCCCAATTCTAAAGGTAAGAAATTACCACAGACAATAAAATCCCCAATCACTAATTTCATCACATTACAGATACCTTTTCCTTTAATTGCGGACCCCGATCCCAAAATTACCCCATAATTGGAGGTTTCCACAATTGGTAGGCGTAGAGACGAAACTAATCTTTCAGCAATAAAATTATGTGTCGCTCCACAATCAATTAGCACTATAACTGACTCTCCTTCAATGTGACCTCTCATCTTCATAGTTCCCAGATTGGATAATCCTACTACAGAATTAATTGACAATTTCGCTATGGCGGTCATAGTGTCATCTGTTTTAATCATCTGTAACTCTGTCTGAACCTCCTGATAATCCTCATCTTCAACAATTTCCAAATCGTCAACCCCATCCGCAACAACCAGCACCCGAAGTTCCCGTTGATCGTGATTTTTACAACGATGACCTGTTGAATACCGTTCATCACAACGAAAACACAACCCTTTATCATGTTTGGCCTGAAATTCAGCATCTGTCAATCGTCTCGCTAGTCCTTCCCGTTTGTTACCCACAATCGACAATCCCCTTAATGTTATCGTCCTCATTGTAGGCGTTTCCGTCGTCTTCCCTCCTTCCTTCAGCCCAGCAGGCAAGGACGAATCCTTCTGATCAAACAGCTGCGGTCGTCCAACTGATTTTGTGCCCAGACCAACATCAAAACGACGCAATTCCCTATTTTCAACCTTCTGAGCCAACTTCATCATCTGTGCCAGACCGACTGGTTCCCAACACTCAACCTCAGCTTTGATCCACGGCAATAGGCCATTCATGAACGTCTCTTCCAGAACCTCATTTGACAAATGTGGCAATGGTGCAACCAATTTATCGAACAAATTCCGATAAGCCTCCACGGTAGTCTCTTGTTTGATGGCTAAAAACCGACCACACAACGACCCCTCCCTCTCAGAACGAAAACGCATCAACAAACGATGCTTCAAATTTGCCCAATCCGTAAAAGAGTCGTGTTCTTCCTGAGCCCGATACCAGTTGAGTGCAACACCATCAAAACTAATGACTGCCACCGTCATCTTCTCCGTCTCCGACAACCGGTGTATGTGAAAATATCGATCTGCTCTGAATAGCCACCCATCCGGATCGATTCCGCTGAACACGGGCATTTCCACCTTCTTGAATTTACTCCGATCCATGGCCGCGTTAGAAGATTCCGCGTTTGTTTGATCAGTTATCGACGGTTGCGGCAACATACTTGTGGTACGACTGCCCGACTCATCCCCTGCCGGCAATTTCTGACCACGGGCTAAGTCTACGGGTATCGTAGTCAACATGATTTGCTGCTTTTCAGCTTGAACTCCCAACTTTTCAATACGGACAGCGAAAGTAGAGATTCTTCAATACCGGGAAGTTTCTGAATTTCAGCGTGAAGTTCCGAAACCTCTTGATCCATTGCTTCCATCCGCTCATCAAATTTCTGCTGCGCCATTGTATCGTGCTTCCCCAGGGTGATGCTCTGATACCAATTTGATAAGATTCCAACCAAACTTTCTTATTGAATTTCATCAAAATTACAGCCCTACACTACACAAGGAAACTGCCCTCAGTCCCCTTCCCCAACTGTTGTATAAGCAATTCCCGAAAACATAAAAACTGTCTTCCCCCTCTCACCTATTCCTCCCTTAACTACCTCCCTCCCCCACAATAAAACAAAGACATAAATAATTACTAATTAAATTAACTACTAATTAAGTTTGGCTAGAAGAAGCCACACTCCCACACACCATACCCTTCCCTTTATTTCTTTTTCTGCTGTAAGTTAATATTATAGGAGGTCTAACAGGATTCTTCAGTGCTGGTCTGCTTCCTCAAAAGGTTGGGCAGTGGATGGCTTATCTGTGAAGACACAGGCATTGTTTTCCAACTTGAGATTCCAATATAAAGCTTGAAGATGACTGAGCTAGAGGATCTTTTGGTCCTTTTTTGAAAGGATGCTTCAAAAGAATCATAAATATATGAGTAAAGATGTCATGGCTTTGTTATCTTTACTTGTGGGCTCCCCCTTCAGTGATTGGGGTATATCTGCCTTTGGACTCCTTGCCCTTCCAAACCTTTTCCTGTTAGCTTCTTCTGTCGTTGTTTGGCTGGCTCCTTTCAGTCAAATGTCTCCACTTTTCCTCTATGTGGAAGGTAAACATCTAAGAAGGTTCAGTTTTTTTGTGTGGCAAGTTATGCATAGAAGAGTTAACATCTTGGATACAATATTGGCTACTAGGTCCTCTTTGGTTGGGCTCATTTTTTCTCAAAGAAAGTTTGGTGTATCATTATAAAAAAAAGTCCAAAGAGAAAATACATACAATCCCTAATTGGAAAATGTCTAAATATTCTTGGCATACCATTTGTCCTGTATCACCTGTTTTTCATGTCTTGATTAGATTTGTTTCCTTTAAAAGTACTATTTTACTTTAGGTTCTTCATTATCCATTGTAATTGATCTGATCAAAATTGTTTGTTCTTTACTAAGTTTTTGTGGAGACAATTGTATTTGGTTGTGCATTCAATAAGATTTGGTAAAAACTTTTTTTAGGTATGCTTATCCTCCACCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGCTTCTATACTCAGGTTACTACAAATGAAATGATAATTTATACGTTTAATTGCTGGAGCATATTTGAAGTAAATTCTTACAACTTAGTTTTTTAATTGTAGGTGCTGCATTTAATGAACAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTGCATTCCTGCACCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCTTGCCACTCCAAGGCCTCAAGTAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGAGCTGGTAAAATTATTTCACTTTTCTAGCTTGGATGAAATTCTGTCTTCAATTGGAGCCCAAAAGTCTGCTCTGACTAATACTAAAGGTATATCCAAATAAGATTATGACCATTTTTGTTGGGAGTATTCCGTAAGAATCAGCTGATTAATTTTGAGCTATGGTGTGGAGGACAACTCTTTAGTCTTTTAGTTAGGACCTGGGCAACAATTTTGCAAAGTCTTTTAGCTAGGACCTTGCAACAATTTTGTACAGACTTGTAGTGAGGTTACTTGGCTGATCGTCAACAACGTTGAAGATCCCTCCTCCCCCTTTTTTTTTGGTGGAATCATATAAAGGTAGGTCTCATTACACAAGAATTAAGGATTCCATTCTAAAAAAATCTTGGGACACCTCAACCATATCCTCTTTGACGATATTCCAAGTTTGGACCCTCTCCCATCTTTTATAAATTTCATATATAAATGAAACTTGTTCTTAAAAAATATTTTTTCATAAATTTCCCCATATATCCATTGGGCCCCATAAATCTTGTACTTCTAAAAAAAATTATTTTATTGTTGTTGAAATTATACTGAGAGTGTGTCAGCAAAATTTATTCACCTTCCTTTATTCCTATGGGCGATGATGTCAATATTTCTTTTGTCAATTTTGTTGATGTTGATGTCATCTACAATTTTGTCATCTAAAATTTTTAGGTGCATCCTATCTTTTATTTTTTCATGTTGATAAATGTTCTTTCCTTTGTCTTTGTCTTCTTAATTCTCCTGTACAATTTTATTTCATATTCTATTTGTTTCTTGTTCTAGAATGTTTCTAGCTGAGACGAGGTATAATATTGTACTCCCATTATGTCTTGGAACTTACTGATTAATTGGATTTAAGTTTGCATCAGGATGTGGAAGGAAAATATAATTCAAGTGGGGTTACAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACGATTGTAGGCCCTGGGATAGACAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCGAAAGAGATTCCTATGATAAAAAAGAAAAACCCAGTGATTCAGGTTGCTTTTATCATAAGATGTAACTAATTGGCATATGATCTTATTTATATGATTCCTTCGCCCTTGTTTAATCATTGCAGATTAGAATTGCCCCTAAAGTGATTCACGATGGAAAAGTCAATAACATTAATAATGATGGTGAAGAGAGAGAAAAGGAAGCAAATGATCTTAAGCCCTATGCAACACTCGAAGATTTAGAGAGAGGAAAATTGCCTCCAGAAGAAATTCTTTCACTTCCAATGTTCAAGGTACTATACCATGTGATATTTCAATGTTTAAGTATGAAACTAATGCATGTTGCTTGTTCCTTGGTTCATTGAAGCTCCATTTTTTATAAATAAACAAATTAGTGACAAAAAAGAGCTTTGTTTTAGATTTTTGATAGACTAACAACTTTCATTGAGAAAAAATTGAAAGAATAGAAGGATATACGAAAAAAAAACCCACAAAAACACCTCCTCTAAAGAAAGGGATTCCAACTAAGTAAGATGTTACCTAAAGAATAACTATAAAAAAGCTTCGATACTAAAACCCAAAGTAAAATATGAAACCTCACTAAGGACCAAACCTCACTAGGGTGATCCATACCTTAAAACCCAAGAAGAATAAGAGTAAATATTGTATTGATATTCAAAATGAGGGGTTGGAAGCCTATTTATACATAAGTTTGGAAACTGAAAATAATTGTAAAATAATACTTAAAATATCTACAACAGTTCTTCCCTTCCCAGAAAATAAACTCGTCCCGGGACGATTGTGATAAAGTGAATTGGTTTTGAGCATGATATGGGAATATGTCTGAGACATTGAAAATGTTGCTGATCTTCACTGTTGGAGGAAGATCAATCGTGTATGCATAAGGGCCAATTCTTTCTAGAATAGGAAGTGGTCCTATCTTCTTATTTATGAGTTTGGAGTGTTGGCCAGTGGGTAGTCTACTTTTCTTCAAGTGGATCATTACTAAATCTCCAATCTGGAATTCCACAGCTCGTTTGTGCTTATCTGCTTTGGACTTATAAGAAGGGTCGGTTGCTTCTAGGTGTTGTTGAACTTCTTCATGAATTGTTTTTATTCGATCAGCCATAATGGTAGCCTCGGCACTAAGATCAACGTAGATGGGTAGTTTAGCAAGATCTAATGTTAATCTAGGAACATGAGTATATACAACTTCAAATGGGCACTTCCCTGTTGAGCCATTAGTCATATTGTTGAATGCAAACTCTGCTTGAGCAAGGTAAAGATCCCATTGGCGAGGTCTATCTCCACTTAGACTTCTTAAAAGATTGCCGAGTGTGCGGTTTGTAACCTCTGTTTGTCCATCAGTTTGAGGATGGTTTATTGTGCTATATAGGAGGTTTGTTCCAAATTTTTTCCATAATGATCGCCAAAAATGACCCATGAATTTGACATCCCTGTCTGATACTATGCTTTTAGGTATACCATGAAGACGGACAATTTCCCTTAAAAAAAGATTGGCAACATTTAAAGCATCATTAGTCTTTTTGCAAGCTAAAAAATGTGCCATTTTGCTAAAGCGGTCAACAACCACTAAAATGGATTCAAAGCCTCTTTGGGTCCTAGGTAAACCAAGGACGAAATCCATAGAGAGATCCTCCCAAATATTGTTTGGTATTGGTAACGTGGAGTACAGACCTTGGTTTAAACTAGCACCCTTGGAAGATTGACAAATATAGCAACGTTTAACAAAATTAGCAACATCCTTTTTAAGTTGTGGCCAGAAAAATTTAGAGGAAAGTAGAGCCAAAGTTTTATCTCGACCAAAGTGGCCAGCAAGACCTCCCGAATGGGCTTCTCGTAACAATGATTCATGAAGAGATGTTTGAGGGATACATAAGGTGTCATTTTTAAATAAAAACTCATAAAAAATATGGAAATCTTTCGCTGGAATATGATTTGACCATGCTTGCCAAATATTTTTGAAATCCAAATCATTAGCACATAATTCAGGTAGATGATCAAAAGCTATAATTTTTCCACGAAGTAAAGTTAGAAGTGTACCTTTTCTGCTTAATGTGTCTGCAAATTTATTAGCTTTACCTGGAGTGTGTTTAATGACGAAGTCAAACCTTTGAATGAATTGGATCCACCTAGCATGCATACAGCTAATTTCCTTTTGAAATTCCAAAAATTTCAAAAAAAAATGATCTATTAGCAACACAAATTCTTTCCCAAGCAAGTAATGTTCCCACTGTTTTAAAGATTGAACAAGAGAGTAGAGTTCTTGTTCATAGGTTGACCATTTTTGTCTGGAAGGGCTCAATTTTTCACTAAAAAATTCTATAGGGTGCTTGTCTTGACTTAGCACAACTCCAATACCGATTCCAGAAGCATCTACTGCGACCTCAAATGGTTTATTAAAGTCTGGAAATCCTAGGACTGGAGTTGAGCTAAGCATTCTCTTTAATTCAGAAAAACTTTGTGATTGTTTCTCCCCCCATTTGAATGGAATATTGGCCTTTAAACAAGCTGTCATTAGTGCTGCAATGGTGCTAAAATGTGGGATGAATTTTCTATAAAATGAAGCTAAACAAAGAAAGCTTCGGATGTCTTTGGTAGTTTTTGGTTCTGACCATTCAACTATCGCCTCTATTTTTCTCGGGTCTACACTAATTCCCTTTGGGCTGATTAGAAATCCCAAAAAATAAAGTTCAGATTGAAGAAAAGAACATTTTTTGAAATTTGTATATAATGCATTTTCCTTTAAAACAGAAAAAACTGAATGTAAATGTTCTAAGTGTTTGTCATAGGAAGAGCTATAAGTTAGGATGTCATCAAAATAAACTACAAGGAATTTATTGCGAAATGGTAACAAGATTTGGTTTATTAAACGCATAAATGTACTTGGGACATTTGACAAACCAAAGGGTATCACAAGCCATTCAAAAAGGCCTTCATTTGTTTTAAAAGTCGTTCTCCACTCATCCCCCGATTGGATCCTAATTTGGTGATAACCACTTTTAAGGTCAATTTAGAAAAACTGGAGGCTCCTCCTAGTTGGTCTAGCAAATCAGAGAGTCGAGGTATTGGGAACCTATATTTTATAGTTATTTTGTTAATGGCTCTACTATCCACACAAAGCCTCCAAGATCCATCTTTTTTTGGTGCCAGTAGAGCAGGGACAGCACATGGGCTAAGGCTTGGTTGTAAATGTCCTTTATCTAATAAGGTGTGGATTTCATTGTGCAAAGCTTCATATTCTTTTGGACTCGTGCGATAATGTGGCAAATGAGGTAAGGAGCTCCCTAGTATTTGATCTATATGATGTTGAATGTTCCAAAGTGGTGGCAGAGAATTGGGTTCTTCTATTAGAGTAGGGAATTCATTTAATAGGTTGGATATGTGAGGATCTAAGATGTTAGAATTTGGACTCTCAAAAGGGTCTTGTTTTAAAATAAATGCTAAAAGTGTATTGTCTTTTTCTAATAGTAGATCCTTACCTGGACAAATGGAAAAGTTGTTTTTCAGTTGTAGAAGGTACCTTAAGAGCTTGCTGTCATTCTTACCGAGGGGAAGGAGAACCACCTTCTTGCCCATCCATCTGAATTCGTAGGTGTTGTCTCGTCCATTATGTGTTGTATTGTTGTTGTATTGTCATGGCCTTCCCAAGAGTAGGTGACACATCCATTTCCAACACATCGCATGTAATTTGGTATTGGTAAGTGTTTCCAATTTGGTCTTTAACCATTGTTTCTCCCCCTTTTTTGATCCAGCTAACCCTATACGGATTGGGTGTGCTTTAGCCTTCAAATTGAGTGCAGTAACCAACTTTTTTGACACAATATTCTTGCTGCTGCCACTGTCTATAATTATTTGACACACCCGACCATTTATAGTACATCTTGTCCGGAATAAGGAGTGTCTCTGAGGGTGGCTTTCAGATTTAGGTGTGAGGAGCACTTGTTGAAGCACACAAGACAATTGATCACCATCGTCAGGTTGTAAGTAAGCCAATTCTTCATTATCCTCTGAATTGCAGCCGTCTGCTCCATCCTCTTCTTCTTGTACAGCCAACGTCCTGCGTTGGGGACATTCATTAGAAAGGTGGCCTTGCTGTCCACAACGAAAGCACTTTGCTAATGTTGGTGGATTGTAGGGATTATTGTTTCTTCGGGCAACGCTTGTATCATTGCTTCGAATAGGTTGCTGTTTTAGAATTGAATCATCTTTCTTGGAATGTTGGTTCAATGTATTTCCAGAGATATGGTTCTTGAAGTTTCAATAGGTGTTTTTCTTGAAGCAGGTTGCTGTCTCTCCCATGCGTTTTTTCTTGAGTAGGTCTTTGTTTGCTTAACCCCTTGATGTATTAATAATTGAGTTTACTTTTTAATCTTTTTAGTTAGTAGCCGGTTGCTATGTATAACGGGTTTGTTAGCTAGTTAGTTGCATTTTAGTTTGTTGAGATCCTTGCCTATAAATAAAGGCTGGATCCCCTCTTTTAATCATCAATAAAAATACAATTTGAGTTGAGAATTTTCTCCAAGAATTGGTCTTACACCAATTGGTATCAGGGCCCCAAAAATCCTTGGAGCTTACGGCAGGGAAGAACGAACAATGGTGGCAAGTCCTAAGGAACTAGTAAAGAAGCGGAGTCTACCACTGCCATATCACCAAGAACTTTAACCGGACGCTTGCTGTCTATTGAAGATTCCATTGGTGGTATTCCTAGGTTACTAGAAAGAATGTCGACATGATTAGAAGAAATCGCCATTGAAGTTCAAGCCACCCGACCTCCACCAAATAATCAAGAAAACCAGCTAAGATTTATCAATCTACCTCAAGAAAGACAAAATGTTCATGTGCGGCAGTTCAACCAACCAAGAAACATCCAAGAACCCCATGCTATTCATCTAGAACACCTAAGAATGCAAGGTCACCGTGGGAGACAATGGCAGTTCAACGATTCTTCAAGTGAGGAAGGAGAAAACGATGAAGTTAGAAGATGGAGAGCTGGAACACAGCATCAGCACGAGCCGAATGAATACAAAGTCAAGTTAGACACATCCTCACATTGAAGAATTCTTGGAATGGATTAAAAATGTGGAAGGGTTCTTCAAATATGCCAACACCCCCAAGCATAAGAAGGTTCAATTAGTCGCCTTAAAATTGCATGGTGGTGCTTCTGCATGGTGGGAGCAATTGGAAGTAAACCGATATAGATGTGGCAAAAGTCCAATCACAAGTTGGGAGCAAACGAAGAGGTTGATGAAAGATTGATTCTTGCCAACTAACTATGAACACTATAATCAGTACCAAAATCTTCAACAAGGAGCTCGATCCGGGACTGAATATACTAAAGATTTTCATTGATTGGGAGCAAGAACCAACTTACCTGAAAGTGAACAGCACCTGATAGCAAGATTTGTTGGTGGTTTGCGGTCATATATAAAAGAAAAAGTTAAGCTGCAGCCGCTGGGTTTTCTTACAGACGCGATTTCCTTGGCAGAAACAGTGGAAGAGCTACAAGAATCTCAATCCAAGAGGTTCAGCCGAGGAAATCAGTGGGAATCCTCATCAAACAACCTGCAAAAGGGGAAGGTAACCGCTGCAAAATCCTCTGCCAATAGCTCTGTGAAGGCCAAAGAAACAGAGGCAGTTTCAAATAAAGATGTAACCCCTCCATACATCAAGAAACAGAGGCAGCTCAATCCGTAATGGTAGGCCAACTTTGGGAAAATGTTTTAGATGTGGGAAGAGTGGCCATCTATCCAATAATTGCCCTGATAGAAAAACAGTAGCCGTGGTGGATGATGAAGATTGCCAAGATCAAAAATCCGACAACCAAGAAAATGAAGAAACTGATTTCTTGGAACCGAATGAAGGAGATAGAGTGTCATGTGTTATTCAACATATTCTTCTCTCCCCTAAATCAGAATCTCCAAATCAAAACACTCCTTATTTAAAACAAGATGCACGGTAAAAGGAAAAATTTGCAATGTTATCATAGACAATGGGAGTTCGGAAAATGTGGTGTCCAAAAAATTAGTTAATGCCTTAAATTTGAAGTCGGAACCCCACCCAAATCCATACAAAGTCAGCTGGATAAAGAAAGGAGGTTAAGCTTAAGTAACACATACTTGCACGGTACAACTTTCAATAGGAAACAGCTACAAAGATCAGATAATTTGTGATGTTTTGGATATGGATGTTTGTTATATCCTGTTGGGACGCCCTTGGCAATACGACATTCAAGCAATCCACAAAGGGCGTGACAATACATATGAATTCTCTTGGCATGGAAGGAAGATTGTGCTTCTGCCATTACCAAAATCAAACTCACAGCACTCTTCCAAAGATCAAAATTGTAAGCTCTTTTGCATTCTTAATTGCAAACAATTTATCCAACTGTGGTGTGGGGCTTAGTAGCAAAAGGAATTTCTCCTCTTGATCCATCTTCTAAAAAGTTCAAGAATTACTATCCAAATTTCCGAATATTACCAATCCACCAGCCACTTTGCCTCCTTTGAGGGATATCCAACATCAAATTGATTTTTTGCCGGGGTCCTCTCTTCCTAACCTTCCTCATTATCGAATGAGTCCAGCTGAATACAATATTTTGCATGAACAAATCCAAAATTTGCTAAATAAAGGGTACATCTAGTCAAGTATCAGCCCCTGTGCAGTTCTGGCTCTTTTAACTCCAAAAAAGGATGGCAGTTGGCGCATGAGTGTAGATAGCAGGGCCATCAACAAAATTACAGTTAAGTACCGGTTTTCGATTCCTCAGATTACTAACCTTTTGGATTAATTAGGTGGTGCCTACATATTTTCCAAGTTAGATCTTCAAAGTGGCTACTACCAGATAAGGATTAAACTGAGAGATGAATGGAAGACCGCTTTCAAAACAAATGAAGGATTGTTTGAATGGTTGGTCATGCCGTTTGGCCTCTCCAATGCTCCTAATACATTCATGAGACTAATGAATCAGGTTTTTCTTCCCTTTCTCAATAAATTTGTTGTCCTTTATTTTGATTACATCCTTATTTTTAGCAAAACCTCAGAGGACCATATGATACACCTACACCCTGTCTTTCAAACTTTATAAAAAAATCAAATCAACTATCTTTAAACCAAAAAAAGTGTCTTTTTAGCCCACCTCTTCATTTTCTTTGATTGGGGAAGCCAAGATAATTGCATTAGCCAAATACGCAACAGGGTGTAGCTTGACAACTTCTTTGATTTCATTGCGAAGAACAAGAATGAATCTTGATACTAACTGTTGCTCGGTCTCGGGTAGATTGTTGCAGGCACCTAAGCACTGGAACTCTTCAGTGTAATAAAAAATTGATCGATCTCCCTGTTTGCAAAGTTGGTACTGACTGTATAGAATCTGCTGATAGTTCATAGGAAGGAATCTTTTCTTCCTCAGCCTTAGTAACTTGGGCCAATTTCTGATAGGTGGTTTCCCATAGTACTGGCGATTTGTTTCTAGTTGATCCCACCATGTTGAGGCTTCTTTTTTAAATTTAAAAGCCACCAACTTTACCTTCTTTTCCTCTGGAATAATAGCATACTCAAAAAAAAAATTTCGACCTTCTTACCCAATCAAGGAAAGCTTCTACTTCCATTCAATCATCGAAACTTGGAAGATCTACCTTCATCTTGTATTCTGGTGCTTCTTGCTGATATTGATATCTCCCCTATCTATTCTCCCTTCTTTCTTGAATTCCGAAGTAGCCGTGATCATCTTCATCGGAAGAATCCGAATCTTGCACCATATATCTGGCTAATTGGTTTTCTTGCTGATGAAATCTTGGTTGGAAAACGTTTCTTCTTGCTGGCAAATTTTGAGTTCCAAGCAGATTGTGTCCAATTACCTTTGCTTTCATTTGATTCTTGAAGGGTTTTTGAAATCTTTCTTGAATTCTTGCGCCCATTTGATCATCAATCGGTCCTTCTTCTTGAAGGTTTTCATTGATTTGAAGAATTCCTTTGTTTTTCTGATTTCCTTGCACTTGCTGACCCTCATTCTCTTTTGGCTTTTAAATATCCAGATGTTGAAGAATTTGAGCTAACATAACTTGCAAGTCACCCACTCCATTTTTCATCTCGATCATGGCAGTTCCTACTGAAGTTTGTTCTCCCAAGCTTTAATTGAAGAGGAAGCTTCTGCGTTTATGAGTTTGTTAATCCAATTTTAAGAATGCGCATTTGGATCGAATGCGCTGATACCAATTGATGCAAATGCTCCAAGAAGAATAAGAATAAATCTTGTATTGATATTCAAAATGAAGGGGTGGAAGCCTATTTATACATAAGTTTGGAAACTGAAAATAATTGTAAAATAATACTTAAAATATCCCTAAAGAAAGACTTACAAGGAGCTTCATTATAGATGGTTAAATACGTTTCTTAAATGTCTCTCTTTAGGTTGTTGTTGGATCCTTCCCCTATTAGTGAGTCGGTCTTTGATGTGGTTTGGAGGATTAAGATTCCAAAGAAAATCAAGTTATTTACCTCGCAAGTTTTTCTAGGTCAGGTGAATACTTTAGATAGGCTTGCTAGGAAGATGACTTTGTTAATGGGTCCTTTCTGCTGTATTCTTTGTCGGAAGGTGGAGGAAGACCTGGATCACCTCCGTTGGGCTATCAGTATGCGAGGTCTATGTGGAATTGCTTCCTGTAGGAGTTTGATGTTGAAATGGCTAGCCAGAGGGATATTTGTGCGATAATCGGGGAATTCCTCCCCCATCTGCCTTTCAGATAGAAAGATCGTTTTTTGTCTCCAAGAAACCAACAAGTCTTTATTATGGATAAAAAGTTGATCTTATAAAAGGGGACTTTCTCTATTTATAGAGAATTACAGGAGTTCTAAAAGGATAACTAAAAGAGGTTAAAACTAATTTGGTAATTAAAATGTAACTAGTCGAGGATTAACCAAGATTAACTTACAAGGAGGTCTATTGGGAAGAAAAGTCCCCTTGTAACTAATATCCCTAAAGAATGACTTACAAGGAGCTTTGTTATAGATGGTTAAACACGTTTCTTAAATAAAAGCTTACCTCATGTGCTTAAGAAAAAAAGCTTACTACATAAGAAATTTGACATGATTAGCTGACCCCCCACCCCACATTCGTTTTAAATTCAAAATTCAAAAAGTCTTCTTGAACATGTGCTCATGGGTATCTTAGCCCTTTTGTCTCTTGTTAGAAAAATATGCGGTCTCTAGATGCTCTGCTATTTTCAGTTTCTGCTTTGTTGGCAGCAAATGGGACATCAATGTTTACCCTTGTGTTGATGCATGTTGGGTTTTTTAAGTAATGTTTTTATAATTATAATTTAAATAAATAGGATTTGATTTTGAATTGTAACAGTTATCTTTTAGTTCTGCTTTATTGGAGACTTTTTCCAATCCCACATTTATTGCAATTTTCTTTTCCTGGGTTTAATAAATTTTGCTTTGATTTCCATGGTTTAGGGTTGAACATATAGCTCCCTTTTTCTCCTAATTTACCTTCGAGTATGATGACAATTTATCTGTGATAAAAATAATGTTGGAAATTTCATGGATATTTCAGAACTATACTACTGGGAGTCCTACTTCGGTGCTGTATATCAAGAACTTAGCCAAAGATGTATTGAATGATGACCTCTACTATATTTTTGGTCAGTTTCCTCGCTCCAATTCAGCCATCATGCATATATGGAAATTCATTTCCTGTTGTGTTGATTATTTGATAAGCTTTTTTACTTTTAGTTTATTATTTGTTGTTATTTATTATTTTCATGTGCTTTGTTATTAG

mRNA sequence

ATGTTGTTGGAATGTCAAATGGAGGATGCTGCCACAAAAGATGCCATATCTAAGGACCATAGGAGTAAATATTATACTGAGGGTATGAGAGCTAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCTTATCCTCCACCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGCTTCTATACTCAGGTGCTGCATTTAATGAACAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTGCATTCCTGCACCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCTTGCCACTCCAAGGCCTCAAGTAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGGGTTACAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACGATTGTAGGCCCTGGGATAGACAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCGAAAGAGATTCCTATGATAAAAAAGAAAAACCCAGTGATTCAGATTAGAATTGCCCCTAAAGTGATTCACGATGGAAAAGTCAATAACATTAATAATGATGGTGAAGAGAGAGAAAAGGAAGCAAATGATCTTAAGCCCTATGCAACACTCGAAGATTTAGAGAGAGGAAAATTGCCTCCAGAAGAAATTCTTTCACTTCCAATGTTCAAGAACTATACTACTGGGAGTCCTACTTCGGTGCTGTATATCAAGAACTTAGCCAAAGATGTATTGAATGATGACCTCTACTATATTTTTGGTCAGTTTCCTCGCTCCAATTCAGCCATCATGCATATATGGAAATTCATTTCCTGTTGTGTTGATTATTTGATAAGCTTTTTTACTTTTAGTTTATTATTTGTTGTTATTTATTATTTTCATGTGCTTTGTTATTAG

Coding sequence (CDS)

ATGTTGTTGGAATGTCAAATGGAGGATGCTGCCACAAAAGATGCCATATCTAAGGACCATAGGAGTAAATATTATACTGAGGGTATGAGAGCTAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCTTATCCTCCACCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGCTTCTATACTCAGGTGCTGCATTTAATGAACAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTGCATTCCTGCACCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCTTGCCACTCCAAGGCCTCAAGTAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGGGTTACAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACGATTGTAGGCCCTGGGATAGACAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCGAAAGAGATTCCTATGATAAAAAAGAAAAACCCAGTGATTCAGATTAGAATTGCCCCTAAAGTGATTCACGATGGAAAAGTCAATAACATTAATAATGATGGTGAAGAGAGAGAAAAGGAAGCAAATGATCTTAAGCCCTATGCAACACTCGAAGATTTAGAGAGAGGAAAATTGCCTCCAGAAGAAATTCTTTCACTTCCAATGTTCAAGAACTATACTACTGGGAGTCCTACTTCGGTGCTGTATATCAAGAACTTAGCCAAAGATGTATTGAATGATGACCTCTACTATATTTTTGGTCAGTTTCCTCGCTCCAATTCAGCCATCATGCATATATGGAAATTCATTTCCTGTTGTGTTGATTATTTGATAAGCTTTTTTACTTTTAGTTTATTATTTGTTGTTATTTATTATTTTCATGTGCTTTGTTATTAG

Protein sequence

MLLECQMEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGQFPRSNSAIMHIWKFISCCVDYLISFFTFSLLFVVIYYFHVLCY

Homology

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BLAST of ClCG02G009850 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-77
Identity = 166/308 (53.90%), Postives = 202/308 (65.58%), Query Frame = 1


Query: 6   QMEDAATK----DAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPP 65
           Q+E++ TK      +S ++ SK       +  +  GEPIA +LG+DYPFPPHL+YAYPPP
Sbjct: 111 QIEESVTKGNAFSTVSTNNDSK-------SGQILSGEPIAPKLGIDYPFPPHLQYAYPPP 170

Query: 66  DGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPP 125
           D NIL NI NALIAVP  YTQVLHLMNKMN+P PFRL LPTPPLP   P           
Sbjct: 171 DANILANITNALIAVPPLYTQVLHLMNKMNLPPPFRLALPTPPLPKAGP----------- 230

Query: 126 LPPLATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDK 185
                  +  + + SS ESEMES E+             T+KSG KR+R   +VG G+DK
Sbjct: 231 ------QQTDLEHQSSSESEMESDED-----------IGTSKSGRKRARHGFLVGLGMDK 290

Query: 186 DVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEEREKEA 245
           DV HE VGVKPS+L PKEIP I+K   V+QI+I  KV  D  K  + N D   E +EK++
Sbjct: 291 DVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDS 350

Query: 246 NDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG- 305
           N LKP+A+LE+LE+G+LPP++ILSLPMFKNYT G+P+ VLYIKNLAKDV+ DD YYIFG 
Sbjct: 351 N-LKPFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGS 382

[Close]

BLAST of ClCG02G009850 vs. Swiss-Prot
Match: RBM40_HUMAN (RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.3e-27
Identity = 99/316 (31.33%), Postives = 144/316 (45.57%), Query Frame = 1


Query: 40  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLP 99
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 100 LPTPPL-----PPCIPAPPSPSLTLPPLPPLATPRP-QVTNMSSDESEMESSEE------ 159
              PP+     P   P PP+      P PP   P P +   +SS+ESE ES+++      
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS-----PQPPEEPPLPDEDEELSSEESEYESTDDEDRQRM 262

Query: 160 --------------------DVEGKYNSSGVTKTAKSGNKRSRCETIVGPGI---DKDVA 219
                                V  K     +  T    +  S    ++   +    + V 
Sbjct: 263 NKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVG 322

Query: 220 HEAVGVKPSTLVP--------KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEERE 279
           ++ +    ST +P        KE    +K + +    +    I  GK+    N D  E  
Sbjct: 323 NKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEI 382

Query: 280 KEANDLKPYATLE--DLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY 310
           KE +D  P   +   +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL 
Sbjct: 383 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 442

[Close]

BLAST of ClCG02G009850 vs. Swiss-Prot
Match: RBM40_PONAB (RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-27
Identity = 97/306 (31.70%), Postives = 141/306 (46.08%), Query Frame = 1


Query: 40  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLP 99
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 100 LPTPPL-----PPCIPAPPSPSLTLPPLPPLATPRPQVTN-MSSDESEMESSEE------ 159
              PP+     P   P PP+      P PP   P P+    +SS+ESE ES+++      
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS-----PQPPEEPPLPEEDEELSSEESEYESTDDEDRQRM 262

Query: 160 --------------------DVEGKYNSSGVTKTAKSGNKRSRCETIVGPGI---DKDVA 219
                                V  K     +  T    +  S    ++   +    + V 
Sbjct: 263 NKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPVG 322

Query: 220 HEAVGVKPSTLVP--------KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEERE 279
           ++ +    ST +P        KE    +K + +    +    I  GK+    N D  E  
Sbjct: 323 NKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEEI 382

Query: 280 KEANDLKPYATLE--DLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY 300
           KE +D  P   +   +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL 
Sbjct: 383 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLK 442

[Close]

BLAST of ClCG02G009850 vs. Swiss-Prot
Match: RBM40_RAT (RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-20
Identity = 93/331 (28.10%), Postives = 132/331 (39.88%), Query Frame = 1


Query: 40  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLP 99
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 100 LPTP-----------PLPPCIPAPPSPSLTLPPLPPLATPRPQVTNMSSDESEMESSEED 159
              P           PLPP  P PP      PPLP       +  ++SS ESE ESS+E+
Sbjct: 203 TARPPMYEDYVQLHAPLPPTSPQPPEE----PPLP------DEDEDLSSKESEYESSDEE 262

Query: 160 VEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNP 219
              + N     K  +  N + +    V P       H     K   ++    P  +  +P
Sbjct: 263 DRQRMN-----KLMELANFQPKRPKTVKP------RHVRKKRKIKDMLTVPSPASQSLHP 322

Query: 220 VI---QIRIAPKVIHDGKVN-----------NINNDGEEREKEANDLKPYATLEDLERG- 279
           V+    +   P+ + + K+            N + + E+  +E N   P   L+D   G 
Sbjct: 323 VLLPSDVFDQPQPVGNKKIEFNISTNVPAALNKDLETEQNNEEKNSDSPDTGLDDSNTGF 382

Query: 280 --------------------KLPPEEILSLPMFKNYTTGSPTSVL--------------- 310
                               ++P + I    + K   +      L               
Sbjct: 383 GKLFPKPNVNITEEIKEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRI 442

[Close]

BLAST of ClCG02G009850 vs. Swiss-Prot
Match: RBM40_MOUSE (RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-19
Identity = 57/126 (45.24%), Postives = 67/126 (53.17%), Query Frame = 1


Query: 40  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLP 99
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 100 LPTP-----------PLPPCIPAPPSPSLTLPPLPPLATPRPQVTNMSSDESEMESSEED 155
              P           PLPP  P PP      PPLP       +  ++SS ESE ESS+E+
Sbjct: 203 TARPPMYEDYMPLHAPLPPTSPQPPEE----PPLP------DEDEDLSSKESEYESSDEE 258

HSP 2 Score: 53.5 bits (127), Expect = 5.2e-06
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 226 NINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAK 285
           N+N   E  E        + + ++LE+G++  EE+ +L +F++Y  G P   +Y+KNLA+
Sbjct: 368 NLNITEEITEDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAR 427

Query: 286 DVLNDDLYYIFGQFPRSNSAIMHI 310
            V   DL +IFG++   +S    I
Sbjct: 428 HVQEKDLKFIFGRYVDFSSETQRI 451

[Close]

BLAST of ClCG02G009850 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 9.7e-153
Identity = 270/291 (92.78%), Postives = 275/291 (94.50%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           ME AA KDAISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP IPAPPSPSLTLPPLPP  
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVGNINNDGEEAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           LEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFG 291

[Close]

BLAST of ClCG02G009850 vs. TrEMBL
Match: D7SNK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 4.9e-104
Identity = 192/272 (70.59%), Postives = 220/272 (80.88%), Query Frame = 1


Query: 27  EGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHL 86
           EG+++  L   EPIAARLG+DYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFY QVLHL
Sbjct: 130 EGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHL 189

Query: 87  MNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLATPRPQVTNMSSDESEMESSE 146
           MNKMNIPAPFR+ LPTPPLPP +PAPP      PP PP    RP + ++SS ESEMESS+
Sbjct: 190 MNKMNIPAPFRMALPTPPLPPPVPAPP------PPPPPPEAARPNLEDLSSGESEMESSD 249

Query: 147 EDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK 206
           E+V+G   S+G  +  K G KR + E IVGPG+DKDVAHEAVGVKP+TLVPKEIPMIKKK
Sbjct: 250 EEVDGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKK 309

Query: 207 NPVIQIRIAPKVIHDGKVN-NINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPM 266
           NPV+QI+I PKVI + K   +I  + E+ EKE  DLKPYATLE+L+ GKLPPEEILSLPM
Sbjct: 310 NPVLQIKIVPKVITEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPM 369

Query: 267 FKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           FKNYT G+P  VLYIKNLAKDV+ DD Y+IFG
Sbjct: 370 FKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFG 395

[Close]

BLAST of ClCG02G009850 vs. TrEMBL
Match: F6HYT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 5.2e-98
Identity = 187/272 (68.75%), Postives = 217/272 (79.78%), Query Frame = 1


Query: 27  EGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHL 86
           EG+++  L   EPIAARLG+DYPFPPHLEY +P  DGNILTNIVNALIAVPRFY QVLHL
Sbjct: 130 EGLKSSSLPASEPIAARLGIDYPFPPHLEYVHP--DGNILTNIVNALIAVPRFYVQVLHL 189

Query: 87  MNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLATPRPQVTNMSSDESEMESSE 146
           MNKMNIPAPFR+ LPTPP+PP +PAPP+P    PP P  A  RP + ++SS ESEMESS+
Sbjct: 190 MNKMNIPAPFRMALPTPPIPPPVPAPPTP----PPPPEAA--RPNLEDLSSGESEMESSD 249

Query: 147 EDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK 206
           E+V+GK  S G  +  K G KR + E I GPG+DKDVAHEAVGVKP+TLVPKEIPMIKKK
Sbjct: 250 EEVDGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKK 309

Query: 207 NPVIQIRIAPKVIHDGKVN-NINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPM 266
           NPV+QI+IAPKVI + K   +I  + E+ EKE  DLK YATLE+L+ GKLPPEEILSLPM
Sbjct: 310 NPVLQIKIAPKVITEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPM 369

Query: 267 FKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           FKNY  G+P  VLYIKNLAKDV+ DD Y+IFG
Sbjct: 370 FKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFG 393

[Close]

BLAST of ClCG02G009850 vs. TrEMBL
Match: M5W4H5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.9e-96
Identity = 186/296 (62.84%), Postives = 225/296 (76.01%), Query Frame = 1


Query: 10  AATKDAISKDHRSK-------YYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPD 69
           AA KD++S    SK            ++   +   EPIA RLGVDYPFPPHLEYAYPPPD
Sbjct: 105 AANKDSLSITATSKSSLVHNPIINRDIQETEVSRSEPIAPRLGVDYPFPPHLEYAYPPPD 164

Query: 70  GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPL 129
           GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR+ LP+PPLPP +P PP      PP 
Sbjct: 165 GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPSPPLPPSVPVPP------PPP 224

Query: 130 PPLATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKD 189
           PPLA  +P   ++SS+ESEMESS+E+++GK  SSG ++    G KR + E IVGP +DKD
Sbjct: 225 PPLAA-KPPSADLSSEESEMESSDEEIDGK-PSSGTSR----GQKRVKREAIVGPAVDKD 284

Query: 190 VAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVI-HDGKVNNINNDGEEREKEANDL 249
           VAHE VG+KP+ LVPKE PMIKKKNP++QI+IAPKV+ ++ K ++I  D E  + E++D+
Sbjct: 285 VAHEDVGLKPAILVPKERPMIKKKNPIVQIKIAPKVVNNEHKDDSITKDSEHPKNESSDI 344

Query: 250 KPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
             +AT E+LERGKLPPEEILSLPMFKNY  G+P SVLYIKNLAKD++ DD YYIFG
Sbjct: 345 NSFATPEELERGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDIVADDFYYIFG 388

[Close]

BLAST of ClCG02G009850 vs. TrEMBL
Match: B9SHJ5_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_1122320 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.1e-95
Identity = 180/291 (61.86%), Postives = 222/291 (76.29%), Query Frame = 1


Query: 8   EDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILT 67
           +D     ++ KD  +   T+G R++ +   EPIA RLGVDYPFPPHLEY YPPPDGNILT
Sbjct: 101 KDHTLPTSVDKDASAMIDTDG-RSKSVPASEPIAPRLGVDYPFPPHLEYTYPPPDGNILT 160

Query: 68  NIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLAT 127
           NIVNALIAVPRFYTQVLHLMNKMNIPAPFR+ LPTPPLPP  P PP      PP PP   
Sbjct: 161 NIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPSAPPPP------PPPPPTVA 220

Query: 128 PRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEA 187
            +P + ++SS E+EMESS+ED++ K  +  V++  KS  KR R E IVGPG+DKDV HEA
Sbjct: 221 GKPHLADLSSSEAEMESSDEDIDNK--THPVSREIKSRRKRVRQEAIVGPGVDKDVVHEA 280

Query: 188 VGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNIN-NDGEEREKEANDLKPYAT 247
           VG+KPS+LVPKEIP+IKKKNPV+QI+IAPKV    + ++I+  + +E+++E  D KP+AT
Sbjct: 281 VGLKPSSLVPKEIPVIKKKNPVLQIKIAPKVSQTEQTDDISMKESDEQDEEGLDHKPFAT 340

Query: 248 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
            E+LE  KL PEEILSLP FKNYT G+P SVLYIKNL+KD++ DD +YIFG
Sbjct: 341 PEELESNKLAPEEILSLPQFKNYTVGNPASVLYIKNLSKDMVADDFFYIFG 382

[Close]

BLAST of ClCG02G009850 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 291.2 bits (744), Expect = 8.3e-79
Identity = 166/308 (53.90%), Postives = 202/308 (65.58%), Query Frame = 1


Query: 6   QMEDAATK----DAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPP 65
           Q+E++ TK      +S ++ SK       +  +  GEPIA +LG+DYPFPPHL+YAYPPP
Sbjct: 111 QIEESVTKGNAFSTVSTNNDSK-------SGQILSGEPIAPKLGIDYPFPPHLQYAYPPP 170

Query: 66  DGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPP 125
           D NIL NI NALIAVP  YTQVLHLMNKMN+P PFRL LPTPPLP   P           
Sbjct: 171 DANILANITNALIAVPPLYTQVLHLMNKMNLPPPFRLALPTPPLPKAGP----------- 230

Query: 126 LPPLATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDK 185
                  +  + + SS ESEMES E+             T+KSG KR+R   +VG G+DK
Sbjct: 231 ------QQTDLEHQSSSESEMESDED-----------IGTSKSGRKRARHGFLVGLGMDK 290

Query: 186 DVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEEREKEA 245
           DV HE VGVKPS+L PKEIP I+K   V+QI+I  KV  D  K  + N D   E +EK++
Sbjct: 291 DVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDS 350

Query: 246 NDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG- 305
           N LKP+A+LE+LE+G+LPP++ILSLPMFKNYT G+P+ VLYIKNLAKDV+ DD YYIFG 
Sbjct: 351 N-LKPFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGS 382

[Close]

BLAST of ClCG02G009850 vs. NCBI nr
Match: gi|449444421|ref|XP_004139973.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus])

HSP 1 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 270/291 (92.78%), Postives = 275/291 (94.50%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           ME AA KDAISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP IPAPPSPSLTLPPLPP  
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVGNINNDGEEAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           LEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFG 291

[Close]

BLAST of ClCG02G009850 vs. NCBI nr
Match: gi|778712593|ref|XP_011656912.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 270/291 (92.78%), Postives = 275/291 (94.50%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           ME AA KDAISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP IPAPPSPSLTLPPLPP  
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVGNINNDGEEAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           LEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFG 291

[Close]

BLAST of ClCG02G009850 vs. NCBI nr
Match: gi|700191445|gb|KGN46649.1| (hypothetical protein Csa_6G118290 [Cucumis sativus])

HSP 1 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 270/291 (92.78%), Postives = 275/291 (94.50%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           ME AA KDAISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP IPAPPSPSLTLPPLPP  
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVGNINNDGEEAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           LEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFG 291

[Close]

BLAST of ClCG02G009850 vs. NCBI nr
Match: gi|659094665|ref|XP_008448180.1| (PREDICTED: RNA-binding protein 40 isoform X4 [Cucumis melo])

HSP 1 Score: 545.0 bits (1403), Expect = 9.0e-152
Identity = 277/324 (85.49%), Postives = 284/324 (87.65%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           MEDAA K AISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP  PAPPSPSLTLPPLPP A
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGQFPRSN--- 306
           LEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG     +   
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSDSTDHLFL 300

Query: 307 --SAIMHIWKFISCCVDYLISFFT 326
               +M  WK      D L SF T
Sbjct: 301 HCIFVMRFWK------DILYSFET 318

[Close]

BLAST of ClCG02G009850 vs. NCBI nr
Match: gi|659094651|ref|XP_008448172.1| (PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo])

HSP 1 Score: 543.9 bits (1400), Expect = 2.0e-151
Identity = 269/291 (92.44%), Postives = 274/291 (94.16%), Query Frame = 1


Query: 7   MEDAATKDAISKDHRSKYYTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 66
           MEDAA K AISKDH S+ +TEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 67  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPCIPAPPSPSLTLPPLPPLA 126
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPP  PAPPSPSLTLPPLPP A
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 127 TPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHE 186
           T R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 187 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYAT 246
           AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYAT
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYAT 240

Query: 247 LEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG 298
           LEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG
Sbjct: 241 LEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFG 291

The following BLAST results are available for this feature:

BLAST of ClCG02G009850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1165_ARATH	1.5e-77	53.90	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G...	[more]
RBM40_HUMAN	5.3e-27	31.33	RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1	[more]
RBM40_PONAB	6.9e-27	31.70	RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1	[more]
RBM40_RAT	3.7e-20	28.10	RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=1 SV=2	[more]
RBM40_MOUSE	3.1e-19	45.24	RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2	[more]

BLAST of ClCG02G009850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCT1_CUCSA	9.7e-153	92.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1	[more]
D7SNK2_VITVI	4.9e-104	70.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=...	[more]
F6HYT0_VITVI	5.2e-98	68.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=...	[more]
M5W4H5_PRUPE	2.9e-96	62.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1	[more]
B9SHJ5_RICCO	1.1e-95	61.86	RNA binding protein, putative OS=Ricinus communis GN=RCOM_1122320 PE=4 SV=1	[more]

BLAST of ClCG02G009850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09230.1	8.3e-79	53.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of ClCG02G009850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444421\|ref\|XP_004139973.1\|	1.4e-152	92.78	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cu...	[more]
gi\|778712593\|ref\|XP_011656912.1\|	1.4e-152	92.78	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cu...	[more]
gi\|700191445\|gb\|KGN46649.1\|	1.4e-152	92.78	hypothetical protein Csa_6G118290 [Cucumis sativus]	[more]
gi\|659094665\|ref\|XP_008448180.1\|	9.0e-152	85.49	PREDICTED: RNA-binding protein 40 isoform X4 [Cucumis melo]	[more]
gi\|659094651\|ref\|XP_008448172.1\|	2.0e-151	92.44	PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G009850.1	ClCG02G009850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 269..308 score: 5.
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 6..299 score: 2.7E
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING PROTEIN 40	coord: 6..299 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G009850	Cla002125	Watermelon (97103) v1	wcgwmB216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G009850	Watermelon (97103) v2	wcgwmbB138
ClCG02G009850	Watermelon (97103) v1	wcgwmB202