ClCG02G009770 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G009770
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCell wall-associated hydrolase
LocationCG_Chr02 : 15350050 .. 15351120 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCCCCCGACTGATTCTACCATAGAGGCCAACGATAGACAATAACTCCCCCCCGAACACAGCTTACAACTTTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGTACTGAGTTGGAATCCCATTCTAACTAAGGATTCTTGTGGTTCCGGAGAATCCAGCTACAGGAGAACCAGGAACGGAGAGCTTTCCCCCCTTTTCCGCCCGCCTCTTTGGTCTTAAGAATGCTGGTTTTAAGAATGAGTGATTGCCCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACAGCTAATGCGTTCCACTTATTGAACAGGGTTCTATGGTCGGTCCGCGACCCCTGGATACCGAAGGCGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGACGATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAACCCTAAGAGAGCCGCCGACTCCAACTACCGTCCATGTACGATCCATACTAGATCTGACCAACTGCCCATCCTACCTCCTCTACGTTCTTGACAGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGGGCCTGCATGAAGGAGTCAGATGCTTCTTCTATTCTTTTATTCTTTTCCTTGGCGTAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

mRNA sequence

ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAACTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

Coding sequence (CDS)

ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAACTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

Protein sequence

MINHRSNCRIGKMECYHIALYRLSSRVGDKRTRTADIRHRPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLGHPGLEPETSPVK
Homology
[Close]
BLAST of ClCG02G009770 vs. TrEMBL
Match: K3Z2R1_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_020829mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 65/86 (75.58%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP-------- 111
           MF+SSSPLLRKSEPPVQVQDTIITAWTIR PTRNRNDPIARAELYQLSYIPP        
Sbjct: 1   MFQSSSPLLRKSEPPVQVQDTIITAWTIRQPTRNRNDPIARAELYQLSYIPPEPSGVCMK 60

Query: 112 ----------SQLGHPGLEPETSPVK 120
                     +QLGHPGLEPETSPVK
Sbjct: 61  ESDASSILFLAQLGHPGLEPETSPVK 86

[Close]
BLAST of ClCG02G009770 vs. TrEMBL
Match: S8EEV4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00245 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 42  IFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 101
           +FVSVESFSGMFRSSSPLLRKSEP VQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI
Sbjct: 3   VFVSVESFSGMFRSSSPLLRKSEPLVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 62

Query: 102 PPS 105
           PPS
Sbjct: 63  PPS 65

[Close]
BLAST of ClCG02G009770 vs. TrEMBL
Match: G7J0Z8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g035630 PE=4 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 47  ESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP 104
           +SFSGMFRSS PLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP
Sbjct: 69  QSFSGMFRSSFPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP 125

[Close]
BLAST of ClCG02G009770 vs. TrEMBL
Match: G7I913_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g015430 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 48  SFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLG 107
           SF GMFRSS PLL+KSEPPVQVQDTIIT WT+RHPT NRNDPIARAELYQLSYIPPSQ+G
Sbjct: 64  SFGGMFRSSFPLLKKSEPPVQVQDTIITTWTVRHPTCNRNDPIARAELYQLSYIPPSQVG 123

[Close]
BLAST of ClCG02G009770 vs. TrEMBL
Match: A0A0B2SUI2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041588 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLGH 109
           MFRSS PLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPS++ H
Sbjct: 1   MFRSSFPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSRVEH 57

[Close]
BLAST of ClCG02G009770 vs. NCBI nr
Match: gi|944221266|gb|KQK85719.1| (hypothetical protein SETIT_020829mg [Setaria italica])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 65/86 (75.58%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP-------- 111
           MF+SSSPLLRKSEPPVQVQDTIITAWTIR PTRNRNDPIARAELYQLSYIPP        
Sbjct: 1   MFQSSSPLLRKSEPPVQVQDTIITAWTIRQPTRNRNDPIARAELYQLSYIPPEPSGVCMK 60

Query: 112 ----------SQLGHPGLEPETSPVK 120
                     +QLGHPGLEPETSPVK
Sbjct: 61  ESDASSILFLAQLGHPGLEPETSPVK 86

[Close]
BLAST of ClCG02G009770 vs. NCBI nr
Match: gi|527209919|gb|EPS74528.1| (hypothetical protein M569_00245, partial [Genlisea aurea])

HSP 1 Score: 125.2 bits (313), Expect = 7.8e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 42  IFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 101
           +FVSVESFSGMFRSSSPLLRKSEP VQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI
Sbjct: 3   VFVSVESFSGMFRSSSPLLRKSEPLVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 62

Query: 102 PPS 105
           PPS
Sbjct: 63  PPS 65

[Close]
BLAST of ClCG02G009770 vs. NCBI nr
Match: gi|922374974|ref|XP_003599575.2| (hypothetical protein MTR_3g035630 [Medicago truncatula])

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 47  ESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP 104
           +SFSGMFRSS PLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP
Sbjct: 69  QSFSGMFRSSFPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP 125

[Close]
BLAST of ClCG02G009770 vs. NCBI nr
Match: gi|357437313|ref|XP_003588932.1| (hypothetical protein MTR_1g015430 [Medicago truncatula])

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 48  SFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLG 107
           SF GMFRSS PLL+KSEPPVQVQDTIIT WT+RHPT NRNDPIARAELYQLSYIPPSQ+G
Sbjct: 64  SFGGMFRSSFPLLKKSEPPVQVQDTIITTWTVRHPTCNRNDPIARAELYQLSYIPPSQVG 123

[Close]
BLAST of ClCG02G009770 vs. NCBI nr
Match: gi|255631262|gb|ACU15998.1| (unknown [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLGH 109
           MFRSS PLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPS++ H
Sbjct: 1   MFRSSFPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSRVEH 57

The following BLAST results are available for this feature:
BLAST of ClCG02G009770 vs. TrEMBL
Match NameE-valueIdentityDescription
K3Z2R1_SETIT3.2e-2675.58Uncharacterized protein OS=Setaria italica GN=SETIT_020829mg PE=4 SV=1[more]
S8EEV4_9LAMI5.4e-2696.83Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00245 PE=4 SV=1[more]
G7J0Z8_MEDTR3.3e-2396.49Uncharacterized protein OS=Medicago truncatula GN=MTR_3g035630 PE=4 SV=2[more]
G7I913_MEDTR1.6e-2288.33Uncharacterized protein OS=Medicago truncatula GN=MTR_1g015430 PE=4 SV=1[more]
A0A0B2SUI2_GLYSO4.8e-2292.98Uncharacterized protein OS=Glycine soja GN=glysoja_041588 PE=4 SV=1[more]
BLAST of ClCG02G009770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944221266|gb|KQK85719.1|4.6e-2675.58hypothetical protein SETIT_020829mg [Setaria italica][more]
gi|527209919|gb|EPS74528.1|7.8e-2696.83hypothetical protein M569_00245, partial [Genlisea aurea][more]
gi|922374974|ref|XP_003599575.2|4.7e-2396.49hypothetical protein MTR_3g035630 [Medicago truncatula][more]
gi|357437313|ref|XP_003588932.1|2.3e-2288.33hypothetical protein MTR_1g015430 [Medicago truncatula][more]
gi|255631262|gb|ACU15998.1|6.8e-2292.98unknown [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G009770.1ClCG02G009770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G009770Watermelon (97103) v1wcgwmB202
ClCG02G009770Watermelon (97103) v2wcgwmbB138