ClCG02G008080 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G008080
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 10147525 .. 10148549 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACATATGGAGTTCTGGTTTGTGGTATGTCCGGGAGTAAATGTGAAGTGGGCATGCCTTATGTGTTTGCTAAGCGGAGACGCGCGGGAGTTGGCCCCATAATTGACAATAAAGGAAAGGCTAAAGTAAGTTCCTCTAACCTTACCTTAACTGATTTGGTAGGATCGGGGATAGAAATCTTTTCGAAGGAGAGTAAGTCCTCATCTAGTGAATCGTCGGATCACTCAAACAAATTTATGGTTATATCGTGAAACCCTAGTGTGCATGATAAGGCTCGATCTTTGGGGTTAAAACAAGTTAGGGTTAATGAAACAAGTGGTATTGATAAATCTATCCTGCATGAAGGTGTGTGTCCTGAGTCAATTCAGTCTGAAATAATAATTACCAATAATGTGTCTTCTAAGAATCGGCCTAGATCTGTTGAAGGAATGTCTGATGATTGCAATACCAGAATTTTATCGTAACTATGACATCTGTGGTTGATATGGTTGCCGAGTGTGATACTGGAAAGCACAGTTCCCCTATTGATAATGTTGAGTGTAATCCTTCTATCCCCTCAAAGTCCCCTAATGATAGCATTATGAAAAGAAGTAACTCTGCGAGTACTGATCCTAAGATCAGTGTTGTGAACAATTCGCTTTTTGCTGTTCAGAGAGTTAGAATTTTTGATGACTTGCCTAGCCTGCCTATTAGTGGTGTTTATGTTGAGCAAGTTGTGTCAGCAAAAGATGCCGATGTGTCTCCAGGGTCTTCCAGTACAAAGTCTAAGAAAATGTCTGTTGATGAAGAAGATGATTGGGGTCTGTTGAGTAGTTCAAAGGAAGAAACCCCTGTTACAACCAGAGTAACAAGGAGTTCTGCAAAAAGAAAAAGCAAGGCTGCCTTAGTAGGGAATGTTGCTACTGTCTCATTAGATGATGTGTCATTTCACTCTGAAGAAGGGGCTAGTCTTTGGAAGTATGTAGTGAAACGAAAGATCATTGATGAGAAGGAATTGTCGCCAAGCATTCAAGAATGTTAG

mRNA sequence

ATGAACACATATGGAGTTCTGGTTTGTGGTATGTCCGGGAGTAAATGTGAAGTGGGCATGCCTTATGTGTTTGCTAAGCGGAGACGCGCGGGAGTTGGCCCCATAATTGACAATAAAGGAAAGGCTAAAGTAAGTTCCTCTAACCTTACCTTAACTGATTTGGTAGGATCGGGGATAGAAATCTTTTCGAAGGAGAGTAAGTCCTCATCTAGTGAATCGTCGGATCACTCAAACAAATTTATGAATTTTATCGTAACTATGACATCTGTGGTTGATATGGTTGCCGAGTGTGATACTGGAAAGCACAGTTCCCCTATTGATAATGTTGAGTGTAATCCTTCTATCCCCTCAAAGTCCCCTAATGATAGCATTATGAAAAGAAGTAACTCTGCGAGTACTGATCCTAAGATCAGTGTTGTGAACAATTCGCTTTTTGCTGTTCAGAGAGTTAGAATTTTTGATGACTTGCCTAGCCTGCCTATTAGTGGTGTTTATGTTGAGCAAGTTGTGTCAGCAAAAGATGCCGATGTGTCTCCAGGGTCTTCCAGTACAAAGTCTAAGAAAATGTCTGTTGATGAAGAAGATGATTGGGGTCTGTTGAGTAGTTCAAAGGAAGAAACCCCTGTTACAACCAGAGTAACAAGGAGTTCTGCAAAAAGAAAAAGCAAGGCTGCCTTAGTAGGGAATGTTGCTACTGTCTCATTAGATGATGTGTCATTTCACTCTGAAGAAGGGGCTAGTCTTTGGAAGTATGTAGTGAAACGAAAGATCATTGATGAGAAGGAATTGTCGCCAAGCATTCAAGAATGTTAG

Coding sequence (CDS)

ATGAACACATATGGAGTTCTGGTTTGTGGTATGTCCGGGAGTAAATGTGAAGTGGGCATGCCTTATGTGTTTGCTAAGCGGAGACGCGCGGGAGTTGGCCCCATAATTGACAATAAAGGAAAGGCTAAAGTAAGTTCCTCTAACCTTACCTTAACTGATTTGGTAGGATCGGGGATAGAAATCTTTTCGAAGGAGAGTAAGTCCTCATCTAGTGAATCGTCGGATCACTCAAACAAATTTATGAATTTTATCGTAACTATGACATCTGTGGTTGATATGGTTGCCGAGTGTGATACTGGAAAGCACAGTTCCCCTATTGATAATGTTGAGTGTAATCCTTCTATCCCCTCAAAGTCCCCTAATGATAGCATTATGAAAAGAAGTAACTCTGCGAGTACTGATCCTAAGATCAGTGTTGTGAACAATTCGCTTTTTGCTGTTCAGAGAGTTAGAATTTTTGATGACTTGCCTAGCCTGCCTATTAGTGGTGTTTATGTTGAGCAAGTTGTGTCAGCAAAAGATGCCGATGTGTCTCCAGGGTCTTCCAGTACAAAGTCTAAGAAAATGTCTGTTGATGAAGAAGATGATTGGGGTCTGTTGAGTAGTTCAAAGGAAGAAACCCCTGTTACAACCAGAGTAACAAGGAGTTCTGCAAAAAGAAAAAGCAAGGCTGCCTTAGTAGGGAATGTTGCTACTGTCTCATTAGATGATGTGTCATTTCACTCTGAAGAAGGGGCTAGTCTTTGGAAGTATGTAGTGAAACGAAAGATCATTGATGAGAAGGAATTGTCGCCAAGCATTCAAGAATGTTAG

Protein sequence

MNTYGVLVCGMSGSKCEVGMPYVFAKRRRAGVGPIIDNKGKAKVSSSNLTLTDLVGSGIEIFSKESKSSSSESSDHSNKFMNFIVTMTSVVDMVAECDTGKHSSPIDNVECNPSIPSKSPNDSIMKRSNSASTDPKISVVNNSLFAVQRVRIFDDLPSLPISGVYVEQVVSAKDADVSPGSSSTKSKKMSVDEEDDWGLLSSSKEETPVTTRVTRSSAKRKSKAALVGNVATVSLDDVSFHSEEGASLWKYVVKRKIIDEKELSPSIQEC
Homology
[Close]
BLAST of ClCG02G008080 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 51/187 (27.27%), Postives = 81/187 (43.32%), Query Frame = 1 

Query: 89  SVVDMVAECDTGKHSSPIDNVECNPSIPSKSPNDSIMKRSNSASTDPKISVVNNSLFAVQ 148
           SV  +V + D+   S  IDN      +PS++ +      + S    P++S+  +   A  
Sbjct: 43  SVETVVLDFDS---SDGIDN-----DVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASD 102

Query: 149 RVRIFDDLPSLPISGVYVEQVVSAKDADVSPGSSSTKSKKMSVDEEDDWGL-----LSSS 208
            +   D +P    +    E + S +D   SP + + + +      E    +     + SS
Sbjct: 103 DIDE-DYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSISMSPLVHVGSS 162

Query: 209 KEETPVTTRVTRSSAKRKSKAALVGNVATVSLDDVSFHSEEGASLWKYVVKRKIIDEKEL 268
                   R  R  + +     +  N+  +S+D VSFHSEEGA  WKYVVKR I+DE  L
Sbjct: 163 SRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHSEEGAHKWKYVVKRCIVDEANL 220

Query: 269 SPSIQEC 271
           S     C
Sbjct: 223 SDQFNFC 220

The following BLAST results are available for this feature:
BLAST of ClCG02G008080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128057|ref|XP_008464024.1|5.4e-0627.27PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G008080.1ClCG02G008080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G008080Silver-seed gourdcarwcgB0406
ClCG02G008080Silver-seed gourdcarwcgB0930
ClCG02G008080Cucumber (Chinese Long) v3cucwcgB138
ClCG02G008080Watermelon (97103) v2wcgwmbB138
ClCG02G008080Wax gourdwcgwgoB294
ClCG02G008080Wax gourdwcgwgoB299
ClCG02G008080Cucumber (Gy14) v1cgywcgB071
ClCG02G008080Cucurbita maxima (Rimu)cmawcgB484
ClCG02G008080Cucurbita maxima (Rimu)cmawcgB530
ClCG02G008080Cucurbita moschata (Rifu)cmowcgB481
ClCG02G008080Cucurbita moschata (Rifu)cmowcgB528
ClCG02G008080Wild cucumber (PI 183967)cpiwcgB129
ClCG02G008080Cucumber (Chinese Long) v2cuwcgB123
ClCG02G008080Melon (DHL92) v3.5.1mewcgB090
ClCG02G008080Watermelon (97103) v1wcgwmB208
ClCG02G008080Cucurbita pepo (Zucchini)cpewcgB270
ClCG02G008080Cucurbita pepo (Zucchini)cpewcgB663
ClCG02G008080Bottle gourd (USVL1VR-Ls)lsiwcgB055
ClCG02G008080Cucumber (Gy14) v2cgybwcgB120
ClCG02G008080Melon (DHL92) v3.6.1medwcgB088