ClCG02G007730 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G007730
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 9404419 .. 9405504 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTATGAACATGACCATCGAGTTAAGCTATAATAGACCTGACATACTGGTGAGCAAAAATTAGATTTTATTTATTTTTAAAGATATGTTATTAATCATTTACGGGTTGAAAACGAGATTGTATTTTATCGAGTTGAAATGCGAGCCTGCAATGGCGTCTTCATGACTATGGAAACTTCAAGCTTTTCTTGAAGATCAACTTCAGCAATGGCATCCCATTTGAACAACCATACCAAATTCCCCACAAAATACTGCAAATGAAGCATTGAAAACCCAATCCCAGGGCAGATTCTTCTCCCTCCCCCAAATGGCATAAATCTAATCTCCTTCTTCCCCGTCAGAACCTCCACTTCATCTTCCTCTTCCTCCTTCCTCAAGAATCTCTCCGCCCTGAACTCCATCGGCTCTTCCCACACTTCCCCATTCCTCGCCATCTCCGCCGCCGCAAAATGCACCGTCGTTTTCTCCGGCACCACGAATTTCCCGTCCAACACCACCTCCTCTGTCACCAAATGTGGTAGAGCCAAATGCCCTGGCGGATGCCGCCTCAAGGTTTCCATTATCACCGCCTTCAGGTACGGCAACTTCTTCACATCCTCTTCTGTTATGTGTTCTTTCGATGATGTTCCATCGATCATCTCATCCATCTCTCTGTATAGCTTCTCTTGGATTTCTGGATATTTTACGATGTTTGCCATTGCCCATTGCATCACCACTACTACGGAATGGACGATTCCGTTGAGAAATTCCGCGCATAGGCTGATGATTTCACCTTCTTCAAGCTTTCGATTCTCTTCTGGTAAGTGTAGGTTTATCAATGTATCAAGATAGGGCAAAATGTGTTCTGATTTTGTTTCTGATTCTATTTCGTTGTTCCTTTGTTCGATTTCACGTTGTCTTTCGTTGAATCGAGCTTCAATTAGAGGAATTATTGCAGTTTCAACTTCGTTTCGAAGTGTTGTGAGTTCATTCCAGAGATTCGGGTAGAGGAATTTCCCCAATTTTAATGGATATTGATTCAGTTTGTTTTGGCTGCTGGAATACAATAGAACGCGATGGAGGAGATCGGCTAGGGCTTTGA

mRNA sequence

ATGAAGATTATGAACATGACCATCGAGTTAAGCTATAATAGACCTGACATACTGATTCTTCTCCCTCCCCCAAATGGCATAAATCTAATCTCCTTCTTCCCCGTCAGAACCTCCACTTCATCTTCCTCTTCCTCCTTCCTCAAGAATCTCTCCGCCCTGAACTCCATCGGCTCTTCCCACACTTCCCCATTCCTCGCCATCTCCGCCGCCGCAAAATGCACCGTCGTTTTCTCCGGCACCACGAATTTCCCGTCCAACACCACCTCCTCTGTCACCAAATGTGGTAGAGCCAAATGCCCTGGCGGATGCCGCCTCAAGGTTTCCATTATCACCGCCTTCAGCTTCTCTTGGATTTCTGGATATTTTACGATGTTTGCCATTGCCCATTGCATCACCACTACTACGGAATGGACGATTCCGTTGAGAAATTCCGCGCATAGGCTGATGATTTCACCTTCTTCAAGCTTTCGATTCTCTTCTGTTTGTTTTGGCTGCTGGAATACAATAGAACGCGATGGAGGAGATCGGCTAGGGCTTTGA

Coding sequence (CDS)

ATGAAGATTATGAACATGACCATCGAGTTAAGCTATAATAGACCTGACATACTGATTCTTCTCCCTCCCCCAAATGGCATAAATCTAATCTCCTTCTTCCCCGTCAGAACCTCCACTTCATCTTCCTCTTCCTCCTTCCTCAAGAATCTCTCCGCCCTGAACTCCATCGGCTCTTCCCACACTTCCCCATTCCTCGCCATCTCCGCCGCCGCAAAATGCACCGTCGTTTTCTCCGGCACCACGAATTTCCCGTCCAACACCACCTCCTCTGTCACCAAATGTGGTAGAGCCAAATGCCCTGGCGGATGCCGCCTCAAGGTTTCCATTATCACCGCCTTCAGCTTCTCTTGGATTTCTGGATATTTTACGATGTTTGCCATTGCCCATTGCATCACCACTACTACGGAATGGACGATTCCGTTGAGAAATTCCGCGCATAGGCTGATGATTTCACCTTCTTCAAGCTTTCGATTCTCTTCTGTTTGTTTTGGCTGCTGGAATACAATAGAACGCGATGGAGGAGATCGGCTAGGGCTTTGA

Protein sequence

MKIMNMTIELSYNRPDILILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFSGTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAFSFSWISGYFTMFAIAHCITTTTEWTIPLRNSAHRLMISPSSSFRFSSVCFGCWNTIERDGGDRLGL

Homology

[Close]

BLAST of ClCG02G007730 vs. TrEMBL
Match: A0A0P0XW62_ORYSJ (Os10g0514550 protein OS=Oryza sativa subsp. japonica GN=Os10g0514550 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.7e-12
Identity = 58/161 (36.02%), Postives = 70/161 (43.48%), Query Frame = 1


Query: 19  ILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFS 78
           IL P PNGI  I   PV ++ S S     +NLS +NSIG SH+   L ISA  K TV   
Sbjct: 45  ILRPTPNGIMRIPLLPVTSTPSPSPPG--RNLSGMNSIGFSHSFSSLPISATMKFTVAPL 104

Query: 79  GTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAF------------------------- 138
           G   +P  + SS   CG AK PGGC  + S +TAF                         
Sbjct: 105 G-MRYPPTSMSSAALCGSAKWPGGCFRRPSRMTAFRYGIFWVSSSVISSWSSLVLDLISS 164

Query: 139 -SFSWISGYFTMFAIAHCITTTTEWTIPLRNSAHRLMISPS 154
            S  W+ G+ T  A+ HC           RNS   L IS S
Sbjct: 165 WSLDWMDGFLTSSAMIHCSVVDIVSVPASRNSEQSLTISSS 202

[Close]

BLAST of ClCG02G007730 vs. TrEMBL
Match: A0A0E0EZV5_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 58/171 (33.92%), Postives = 72/171 (42.11%), Query Frame = 1


Query: 19  ILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFS 78
           ILLP PNGI   S  PV ++ S S  +  +N S +NSIG SH+   L ISA  K TV   
Sbjct: 45  ILLPTPNGIIRTSRLPVTSTPSPSPPA--RNRSGMNSIGFSHSLSSLPISATMKFTVAPL 104

Query: 79  GTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAF------------------------- 138
           G   +P  + SS   CG  K  GGC  + S +TAF                         
Sbjct: 105 G-MRYPPTSVSSAILCGSTKWAGGCLRRPSRMTAFRYGMSCVSSSVISSWSSPSLVLDLI 164

Query: 139 ---SFSWISGYFTMFAIAHCITTTTEWTIPLRNSAHRLMISPSSSFRFSSV 162
              S  W+ G+ T  A+ HC          LRNS   +  S S   R  SV
Sbjct: 165 SSWSLDWMDGFLTSSAMIHCSAVAVVSVPALRNSEESITSSSSVRARSPSV 212

[Close]

BLAST of ClCG02G007730 vs. TrEMBL
Match: A0A0P0XWM5_ORYSJ (Os10g0514425 protein OS=Oryza sativa subsp. japonica GN=Os10g0514425 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = 1


Query: 19  ILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFS 78
           IL P PNGI  I   PV ++ S S     +NLS +N IG SH+   L ISA  K TV   
Sbjct: 19  ILRPTPNGIMRILLLPVMSTPSPSPPG--RNLSGMNCIGFSHSLSSLPISATMKFTVAPL 78

Query: 79  GTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAFSFS--WIS 120
           G   +P  + SS   CG AK P GC  + S +TAF +   W+S
Sbjct: 79  G-MRYPPTSMSSAALCGSAKWPSGCFRRPSRMTAFRYGIFWVS 118

[Close]

BLAST of ClCG02G007730 vs. TrEMBL
Match: A0A103XV92_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000444 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 44  SSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFSGTTNFPSNTTSSVTKCGRAKCPGGC 103
           SSF+KNLS LNSIGSSHT     ISA  K  V  SG   +PS +TS VT CG  + P GC
Sbjct: 15  SSFIKNLSGLNSIGSSHTFGSQPISATKKLMVAPSGIL-YPSTSTSFVTLCGSRRWPDGC 74

Query: 104 RLKVSIITAFSF 116
            L  S  TAF +
Sbjct: 75  LLSPSKTTAFRY 85

[Close]

BLAST of ClCG02G007730 vs. NCBI nr
Match: gi|937936734|dbj|BAT11648.1| (Os10g0514550 [Oryza sativa Japonica Group])

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-12
Identity = 58/161 (36.02%), Postives = 70/161 (43.48%), Query Frame = 1


Query: 19  ILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFS 78
           IL P PNGI  I   PV ++ S S     +NLS +NSIG SH+   L ISA  K TV   
Sbjct: 45  ILRPTPNGIMRIPLLPVTSTPSPSPPG--RNLSGMNSIGFSHSFSSLPISATMKFTVAPL 104

Query: 79  GTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAF------------------------- 138
           G   +P  + SS   CG AK PGGC  + S +TAF                         
Sbjct: 105 G-MRYPPTSMSSAALCGSAKWPGGCFRRPSRMTAFRYGIFWVSSSVISSWSSLVLDLISS 164

Query: 139 -SFSWISGYFTMFAIAHCITTTTEWTIPLRNSAHRLMISPS 154
            S  W+ G+ T  A+ HC           RNS   L IS S
Sbjct: 165 WSLDWMDGFLTSSAMIHCSVVDIVSVPASRNSEQSLTISSS 202

[Close]

BLAST of ClCG02G007730 vs. NCBI nr
Match: gi|937936732|dbj|BAT11646.1| (Os10g0514425 [Oryza sativa Japonica Group])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = 1


Query: 19  ILLPPPNGINLISFFPVRTSTSSSSSSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFS 78
           IL P PNGI  I   PV ++ S S     +NLS +N IG SH+   L ISA  K TV   
Sbjct: 19  ILRPTPNGIMRILLLPVMSTPSPSPPG--RNLSGMNCIGFSHSLSSLPISATMKFTVAPL 78

Query: 79  GTTNFPSNTTSSVTKCGRAKCPGGCRLKVSIITAFSFS--WIS 120
           G   +P  + SS   CG AK P GC  + S +TAF +   W+S
Sbjct: 79  G-MRYPPTSMSSAALCGSAKWPSGCFRRPSRMTAFRYGIFWVS 118

[Close]

BLAST of ClCG02G007730 vs. NCBI nr
Match: gi|976910799|gb|KVH97470.1| (hypothetical protein Ccrd_000444 [Cynara cardunculus var. scolymus])

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 44  SSFLKNLSALNSIGSSHTSPFLAISAAAKCTVVFSGTTNFPSNTTSSVTKCGRAKCPGGC 103
           SSF+KNLS LNSIGSSHT     ISA  K  V  SG   +PS +TS VT CG  + P GC
Sbjct: 15  SSFIKNLSGLNSIGSSHTFGSQPISATKKLMVAPSGIL-YPSTSTSFVTLCGSRRWPDGC 74

Query: 104 RLKVSIITAFSF 116
            L  S  TAF +
Sbjct: 75  LLSPSKTTAFRY 85

The following BLAST results are available for this feature:

BLAST of ClCG02G007730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P0XW62_ORYSJ	6.7e-12	36.02	Os10g0514550 protein OS=Oryza sativa subsp. japonica GN=Os10g0514550 PE=4 SV=1	[more]
A0A0E0EZV5_9ORYZ	1.3e-10	33.92	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
A0A0P0XWM5_ORYSJ	1.2e-08	42.72	Os10g0514425 protein OS=Oryza sativa subsp. japonica GN=Os10g0514425 PE=4 SV=1	[more]
A0A103XV92_CYNCS	3.5e-08	54.17	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000444 PE=4 ...	[more]

BLAST of ClCG02G007730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|937936734\|dbj\|BAT11648.1\|	9.6e-12	36.02	Os10g0514550 [Oryza sativa Japonica Group]	[more]
gi\|937936732\|dbj\|BAT11646.1\|	1.7e-08	42.72	Os10g0514425 [Oryza sativa Japonica Group]	[more]
gi\|976910799\|gb\|KVH97470.1\|	5.0e-08	54.17	hypothetical protein Ccrd_000444 [Cynara cardunculus var. scolymus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G007730.1	ClCG02G007730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G007730	CmoCh20G009560	Cucurbita moschata (Rifu)	cmowcgB481

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G007730	Cucumber (Chinese Long) v3	cucwcgB138
ClCG02G007730	Watermelon (97103) v2	wcgwmbB138
ClCG02G007730	Wax gourd	wcgwgoB299
ClCG02G007730	Cucumber (Gy14) v1	cgywcgB458
ClCG02G007730	Cucurbita maxima (Rimu)	cmawcgB484
ClCG02G007730	Cucurbita maxima (Rimu)	cmawcgB530
ClCG02G007730	Cucurbita moschata (Rifu)	cmowcgB528
ClCG02G007730	Wild cucumber (PI 183967)	cpiwcgB129
ClCG02G007730	Cucumber (Chinese Long) v2	cuwcgB123
ClCG02G007730	Melon (DHL92) v3.5.1	mewcgB090
ClCG02G007730	Watermelon (97103) v1	wcgwmB208
ClCG02G007730	Cucurbita pepo (Zucchini)	cpewcgB270
ClCG02G007730	Cucurbita pepo (Zucchini)	cpewcgB663
ClCG02G007730	Bottle gourd (USVL1VR-Ls)	lsiwcgB055
ClCG02G007730	Cucumber (Gy14) v2	cgybwcgB120
ClCG02G007730	Melon (DHL92) v3.6.1	medwcgB088
ClCG02G007730	Silver-seed gourd	carwcgB0930
ClCG02G007730	Silver-seed gourd	carwcgB1026