ClCG02G007570 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G007570
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPhotosystem II protein N
LocationCG_Chr02 : 8942623 .. 8943342 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACAGCAACCCTAGTTGCCATCTCTATATCTGGTTTACTTGTAAGTTTTACTGGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAACACGGGGACTAGTTGAAGTAATGAGCCTCACAATATTGTGAGGCTCATTACTTCAATTGAGATAATGAGAAATCATTTCGCCTTTTTAGTTGGAACTTTAGGCGGTTCGCGAAAAAAGATAGCGAAAAAAATTATTCCTAGAGTCGAGACTAAGAGGAATGTATAAACCAATGCTTCCATAGATTTGATTTCGGTTTACAATTATAGCTTCCATACCTGTTTAGTTGGGATCTTTTTACGGATAAAAAAAAGACCAAGACAAGAGTCAAAGAAACGAAAAGTCGGCAATCCGAATCAAGATTTATCCGCTACCCCTATCTATGTCAAATCAAAAAATAAAGGAAAAAAGGAACAGAGCAATCTTGTATCAGACTAGACTCTTTTTGTAGTTGGATCTCCAAGTTTTTGGAATGCCCCAAATTCTACTTGAGCGTCCAAATCTGGGTCAATCCCAGCAAAGACATCTCTGAACAAGGTTCTAGCACCATGCCAAATGTGTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAAACCAACCCCTTGGACTGCTACGAAAAACCCCATCGAATTTCAAAGTAGCACGATCTAA

mRNA sequence

ATGGAAACAGCAACCCTAGTTGCCATCTCTATATCTGGTTTACTTTTTTACTGGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAACACGGGGACTAGTTGAAATAATGAGAAATCATTTCGCCTTTTTAGTTGGAACTTTAGGCGGTTCGCGAAAAAAGATAGCGAAAAAAATTATTCCTAGAGTCGAGACTAAGAGGAATTTTTTGGAATGCCCCAAATTCTACTTGAGCGTCCAAATCTGGGTCAATCCCAGCAAAGACATCTCTGAACAAGGTTCTAGCACCATGCCAAATGTGTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAAACCAACCCCTTGGACTGCTACGAAAAACCCCATCGAATTTCAAAGTAGCACGATCTAA

Coding sequence (CDS)

ATGGAAACAGCAACCCTAGTTGCCATCTCTATATCTGGTTTACTTTTTTACTGGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAACACGGGGACTAGTTGAAATAATGAGAAATCATTTCGCCTTTTTAGTTGGAACTTTAGGCGGTTCGCGAAAAAAGATAGCGAAAAAAATTATTCCTAGAGTCGAGACTAAGAGGAATTTTTTGGAATGCCCCAAATTCTACTTGAGCGTCCAAATCTGGGTCAATCCCAGCAAAGACATCTCTGAACAAGGTTCTAGCACCATGCCAAATGTGTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAAACCAACCCCTTGGACTGCTACGAAAAACCCCATCGAATTTCAAAGTAGCACGATCTAA

Protein sequence

METATLVAISISGLLFYWVCLIYCFWATLSTTKRSIRGTRGLVEIMRNHFAFLVGTLGGSRKKIAKKIIPRVETKRNFLECPKFYLSVQIWVNPSKDISEQGSSTMPNVSEEEEQSKRSMPKSKPTPWTATKNPIEFQSSTI
Homology
[Close]
BLAST of ClCG02G007570 vs. TrEMBL
Match: A0A0D2S2N2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G136200 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  METATLVAISISGLLFYWVCLIYCFWATLSTTKRSIRGTRGLVEIMRNHFAFLVGTLGGS 60
          ME ATLVAISISGLL                  RSIRGTRG++E+M+ HF FLV  LGGS
Sbjct: 1  MEIATLVAISISGLL------------------RSIRGTRGIIEVMKTHFIFLVRILGGS 59

Query: 61 RKKIAKKIIPRVETKRN 78
          RKKIAKKIIP+V+TKRN
Sbjct: 61 RKKIAKKIIPKVDTKRN 59

[Close]
BLAST of ClCG02G007570 vs. NCBI nr
Match: gi|297735948|emb|CBI23505.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 55/77 (71.43%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 1  METATLVAISISGLLFYWVCLIYCFWATLSTTKRSIRGTRGLVEIMRNHFAFLVGTLGGS 60
          METATLVAISIS L               STTKRSIRGTRGLVEIM+ +F FLV +LGGS
Sbjct: 1  METATLVAISISAL---------------STTKRSIRGTRGLVEIMKKNFIFLVFSLGGS 60

Query: 61 RKKIAKKIIPRVETKRN 78
          RKKIAKKIIPRVETKRN
Sbjct: 61 RKKIAKKIIPRVETKRN 62

[Close]
BLAST of ClCG02G007570 vs. NCBI nr
Match: gi|763810525|gb|KJB77427.1| (hypothetical protein B456_012G136200 [Gossypium raimondii])

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-14
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  METATLVAISISGLLFYWVCLIYCFWATLSTTKRSIRGTRGLVEIMRNHFAFLVGTLGGS 60
          ME ATLVAISISGLL                  RSIRGTRG++E+M+ HF FLV  LGGS
Sbjct: 1  MEIATLVAISISGLL------------------RSIRGTRGIIEVMKTHFIFLVRILGGS 59

Query: 61 RKKIAKKIIPRVETKRN 78
          RKKIAKKIIP+V+TKRN
Sbjct: 61 RKKIAKKIIPKVDTKRN 59

The following BLAST results are available for this feature:
BLAST of ClCG02G007570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2S2N2_GOSRA3.3e-1462.34Uncharacterized protein OS=Gossypium raimondii GN=B456_012G136200 PE=4 SV=1[more]
BLAST of ClCG02G007570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297735948|emb|CBI23505.3|1.3e-1671.43unnamed protein product [Vitis vinifera][more]
gi|763810525|gb|KJB77427.1|4.8e-1462.34hypothetical protein B456_012G136200 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007570.1ClCG02G007570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G007570Watermelon (97103) v2wcgwmbB138
ClCG02G007570Watermelon (97103) v1wcgwmB208