ClCG02G005820 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G005820
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NADH dehydrogenase subunit F
Location	CG_Chr02 : 6421848 .. 6422379 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTCTGCGTTGGGCTCGCTTCTTCAAGCGGAGCCCAACCTATACAAGACAAGGTGCTGCTCGCTTTCTCTCAGCCACAAGTGGCTTATTTATGTAGTGGTCGGCATTCCTACGTGCTCCTCCCTCCTTGCTCACCGACTTAAGAATCTAAAAGTGACCTTTGGATGTTGTCGTGACGCTTTGGTTACGAAGGTTGCCGGGGTCTAGGTTTATGGATGGATTCAGTCAACGAAAGTCCCTCAAACTCAATCAATATCAACAACATGTCGTGACCGGTTAGGCTTGGTTGATTTTGTCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGGTTTGCCGGCCGATAAGATCTTTAAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTTTGCGCGAGTCACCTTCTTCTAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

mRNA sequence

ATGGCTTTCTCTGCGTTGGGCTCGCTTCTTCAAGCGGAGCCCAACCTATACAAGACAAGGTGCTGCTCGCTTTCTCTCAGCCACAAGTGGCTTATTTATGTAGTGGTCGGCATTCCTACGTGCTCCTCCCTCCTTGCTCACCGACTTAAGAATCTAAAAGTGACCTTTGGATGTTGTCGTGACGCTTTGGTTACGAAGGTTGCCGGGGCTTGGTTGATTTTGTCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGGTTTGCCGGCCGATAAGATCTTTAAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTTTGCGCGAGTCACCTTCTTCTAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

Coding sequence (CDS)

ATGGCTTTCTCTGCGTTGGGCTCGCTTCTTCAAGCGGAGCCCAACCTATACAAGACAAGGTGCTGCTCGCTTTCTCTCAGCCACAAGTGGCTTATTTATGTAGTGGTCGGCATTCCTACGTGCTCCTCCCTCCTTGCTCACCGACTTAAGAATCTAAAAGTGACCTTTGGATGTTGTCGTGACGCTTTGGTTACGAAGGTTGCCGGGGCTTGGTTGATTTTGTCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGGTTTGCCGGCCGATAAGATCTTTAAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTTTGCGCGAGTCACCTTCTTCTAGGCTTCGCTGGACGACACGGCATTCTCGTTCAAATATAG

Protein sequence

MAFSALGSLLQAEPNLYKTRCCSLSLSHKWLIYVVVGIPTCSSLLAHRLKNLKVTFGCCRDALVTKVAGAWLILSEKKVGFGGSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVWLFLSIEKESAVCASHLLLGFAGRHGILVQI

Homology

[Close]

BLAST of ClCG02G005820 vs. TrEMBL
Match: A0A0D2QR83_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G161100 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-41
Identity = 100/145 (68.97%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 1   MAFSALGSLLQAEPNLYKTRCCSLSLSHKWLIYVVVGIPTCSSLLAHRLKNLKVTFGCCR 60
           MAFS  GSLLQA PNLYK     L+ S   + YVVVGIPTCSS    R++   +      
Sbjct: 1   MAFSDRGSLLQAPPNLYKVL---LAFSQPLVAYVVVGIPTCSSPPYLRIQRSPLD----- 60

Query: 61  DALVTKVAGAWLILSEKKVGFGGSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVW 120
                    AWLILSEKKVGFGGSLIS P VLVRSGPWSSVSGLPADKI +IDQPAGLVW
Sbjct: 61  ---------AWLILSEKKVGFGGSLISTPPVLVRSGPWSSVSGLPADKISEIDQPAGLVW 120

Query: 121 LFLSIEKESAVCASHLLLGFAGRHG 146
           LFLSIEKESAVCASHLLLG AGRHG
Sbjct: 121 LFLSIEKESAVCASHLLLGSAGRHG 128

[Close]

BLAST of ClCG02G005820 vs. TrEMBL
Match: G7LCU8_MEDTR (NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Medicago truncatula GN=MTR_8g059760 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-21
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 83  GSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVWLFLSIE-KESAVCASHLLLGFA 142
           GSLIS P VL+RSGPWSSVSG PADKI +IDQPAGLVWLFLSIE KESAVCASHLLLG A
Sbjct: 19  GSLISTPPVLIRSGPWSSVSGFPADKISEIDQPAGLVWLFLSIEKKESAVCASHLLLGSA 78

Query: 143 GRHGIL 148
           GRH  +
Sbjct: 79  GRHAFV 84

[Close]

BLAST of ClCG02G005820 vs. TrEMBL
Match: A0A072TI43_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0082s0270 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 83  GSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVWLFLSIE-KESAVCA 134
           GSLIS P VL+RSGPWSSVSGLPADKI +IDQPAGLVWLFLSIE KESAVCA
Sbjct: 37  GSLISTPPVLIRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKKESAVCA 88

[Close]

BLAST of ClCG02G005820 vs. TrEMBL
Match: A0A072TI43_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0082s0270 PE=4 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 1.6e+02
Identity = 21/36 (58.33%), Postives = 23/36 (63.89%), Query Frame = 1


Query: 1  MAFSALGSLLQAEPNLYKTRCCSLSLSHKWLIYVVV 37
          MAFS  GSLLQA PNLYK     L+ S   + YVVV
Sbjct: 1  MAFSDRGSLLQAPPNLYKV---LLAFSQPPVAYVVV 33

[Close]

BLAST of ClCG02G005820 vs. NCBI nr
Match: gi|763742236|gb|KJB09735.1| (hypothetical protein B456_001G161100 [Gossypium raimondii])

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41
Identity = 100/145 (68.97%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 1   MAFSALGSLLQAEPNLYKTRCCSLSLSHKWLIYVVVGIPTCSSLLAHRLKNLKVTFGCCR 60
           MAFS  GSLLQA PNLYK     L+ S   + YVVVGIPTCSS    R++   +      
Sbjct: 1   MAFSDRGSLLQAPPNLYKVL---LAFSQPLVAYVVVGIPTCSSPPYLRIQRSPLD----- 60

Query: 61  DALVTKVAGAWLILSEKKVGFGGSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVW 120
                    AWLILSEKKVGFGGSLIS P VLVRSGPWSSVSGLPADKI +IDQPAGLVW
Sbjct: 61  ---------AWLILSEKKVGFGGSLISTPPVLVRSGPWSSVSGLPADKISEIDQPAGLVW 120

Query: 121 LFLSIEKESAVCASHLLLGFAGRHG 146
           LFLSIEKESAVCASHLLLG AGRHG
Sbjct: 121 LFLSIEKESAVCASHLLLGSAGRHG 128

[Close]

BLAST of ClCG02G005820 vs. NCBI nr
Match: gi|357516417|ref|XP_003628497.1| (NADH-ubiquinone oxidoreductase (complex I), chain 5 [Medicago truncatula])

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-21
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 83  GSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVWLFLSIE-KESAVCASHLLLGFA 142
           GSLIS P VL+RSGPWSSVSG PADKI +IDQPAGLVWLFLSIE KESAVCASHLLLG A
Sbjct: 19  GSLISTPPVLIRSGPWSSVSGFPADKISEIDQPAGLVWLFLSIEKKESAVCASHLLLGSA 78

Query: 143 GRHGIL 148
           GRH  +
Sbjct: 79  GRHAFV 84

[Close]

BLAST of ClCG02G005820 vs. NCBI nr
Match: gi|922326897|ref|XP_013442841.1| (hypothetical protein MTR_0082s0270 [Medicago truncatula])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 83  GSLISKPTVLVRSGPWSSVSGLPADKIFKIDQPAGLVWLFLSIE-KESAVCA 134
           GSLIS P VL+RSGPWSSVSGLPADKI +IDQPAGLVWLFLSIE KESAVCA
Sbjct: 37  GSLISTPPVLIRSGPWSSVSGLPADKISEIDQPAGLVWLFLSIEKKESAVCA 88

[Close]

BLAST of ClCG02G005820 vs. NCBI nr
Match: gi|922326897|ref|XP_013442841.1| (hypothetical protein MTR_0082s0270 [Medicago truncatula])

HSP 1 Score: 34.3 bits (77), Expect = 2.3e+02
Identity = 21/36 (58.33%), Postives = 23/36 (63.89%), Query Frame = 1


Query: 1  MAFSALGSLLQAEPNLYKTRCCSLSLSHKWLIYVVV 37
          MAFS  GSLLQA PNLYK     L+ S   + YVVV
Sbjct: 1  MAFSDRGSLLQAPPNLYKV---LLAFSQPPVAYVVV 33

HSP 2 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 96  GPWSSVSGLPADKIFKIDQPAGLVWLFLSIEKESA 131
           GPWSSVSGLPADKI +IDQPAGLVWLFLSIEK+SA
Sbjct: 5   GPWSSVSGLPADKITEIDQPAGLVWLFLSIEKDSA 39

The following BLAST results are available for this feature:

BLAST of ClCG02G005820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2QR83_GOSRA	1.5e-41	68.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G161100 PE=4 SV=1	[more]
G7LCU8_MEDTR	5.1e-21	83.33	NADH-ubiquinone oxidoreductase (Complex I), chain 5 OS=Medicago truncatula GN=MT...	[more]
A0A072TI43_MEDTR	1.9e-15	88.46	Uncharacterized protein OS=Medicago truncatula GN=MTR_0082s0270 PE=4 SV=1	[more]
A0A072TI43_MEDTR	1.6e+02	58.33	Uncharacterized protein OS=Medicago truncatula GN=MTR_0082s0270 PE=4 SV=1	[more]

BLAST of ClCG02G005820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763742236\|gb\|KJB09735.1\|	2.2e-41	68.97	hypothetical protein B456_001G161100 [Gossypium raimondii]	[more]
gi\|357516417\|ref\|XP_003628497.1\|	7.3e-21	83.33	NADH-ubiquinone oxidoreductase (complex I), chain 5 [Medicago truncatula]	[more]
gi\|922326897\|ref\|XP_013442841.1\|	2.7e-15	88.46	hypothetical protein MTR_0082s0270 [Medicago truncatula]	[more]
gi\|922326897\|ref\|XP_013442841.1\|	2.3e+02	58.33	hypothetical protein MTR_0082s0270 [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G005820.1	ClCG02G005820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G005820	Cla97C02G032800	Watermelon (97103) v2	wcgwmbB138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G005820	Wild cucumber (PI 183967)	cpiwcgB136
ClCG02G005820	Wild cucumber (PI 183967)	cpiwcgB576
ClCG02G005820	Cucumber (Chinese Long) v2	cuwcgB547
ClCG02G005820	Melon (DHL92) v3.5.1	mewcgB197
ClCG02G005820	Melon (DHL92) v3.5.1	mewcgB518
ClCG02G005820	Watermelon (97103) v1	wcgwmB192
ClCG02G005820	Watermelon (97103) v1	wcgwmB198
ClCG02G005820	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G005820	Cucurbita pepo (Zucchini)	cpewcgB590
ClCG02G005820	Bottle gourd (USVL1VR-Ls)	lsiwcgB132
ClCG02G005820	Bottle gourd (USVL1VR-Ls)	lsiwcgB428
ClCG02G005820	Cucumber (Gy14) v2	cgybwcgB125
ClCG02G005820	Cucumber (Gy14) v2	cgybwcgB507
ClCG02G005820	Melon (DHL92) v3.6.1	medwcgB192
ClCG02G005820	Melon (DHL92) v3.6.1	medwcgB272
ClCG02G005820	Melon (DHL92) v3.6.1	medwcgB513
ClCG02G005820	Silver-seed gourd	carwcgB0203
ClCG02G005820	Silver-seed gourd	carwcgB0523
ClCG02G005820	Silver-seed gourd	carwcgB0746
ClCG02G005820	Silver-seed gourd	carwcgB0786
ClCG02G005820	Cucumber (Chinese Long) v3	cucwcgB304
ClCG02G005820	Cucumber (Chinese Long) v3	cucwcgB572
ClCG02G005820	Watermelon (97103) v2	wcgwmbB129
ClCG02G005820	Watermelon (97103) v2	wcgwmbB167
ClCG02G005820	Wax gourd	wcgwgoB275
ClCG02G005820	Wax gourd	wcgwgoB314
ClCG02G005820	Watermelon (Charleston Gray)	wcgwcgB086
ClCG02G005820	Watermelon (Charleston Gray)	wcgwcgB138
ClCG02G005820	Cucumber (Gy14) v1	cgywcgB396
ClCG02G005820	Cucumber (Gy14) v1	cgywcgB405
ClCG02G005820	Cucurbita maxima (Rimu)	cmawcgB101
ClCG02G005820	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G005820	Cucurbita maxima (Rimu)	cmawcgB757
ClCG02G005820	Cucurbita moschata (Rifu)	cmowcgB088
ClCG02G005820	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G005820	Cucurbita moschata (Rifu)	cmowcgB759