ClCG02G005490 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G005490
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 5994360 .. 5994695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGTGGATCATTATAACAACACAACGAAAAGAGAAACTAAGGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCATTCTCTGGTGTGTTATTTGAACTAGTGGTAGAGGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

mRNA sequence

ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGTGGATCATTATAACAACACAACGAAAAGAGAAACTAAGGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCATTCTCTGGTGTGTTATTTGAACTAGTGGTAGAGGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

Coding sequence (CDS)

ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGTGGATCATTATAACAACACAACGAAAAGAGAAACTAAGGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCATTCTCTGGTGTGTTATTTGAACTAGTGGTAGAGGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

Protein sequence

MSCVPKDDHLKPIVDIHEEFVQNVGRLAVDHYNNTTKRETKVKFKRVVNGLSGGVIFSFSGVLFELVVEVEEDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK
Homology
[Close]
BLAST of ClCG02G005490 vs. TrEMBL
Match: A0A0A0L191_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508520 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 10  LKPIVDIHEEFVQNVGRLAVDHYNNTTKRETKVKFKRVVNGLSGGVIFS---FSGVLFEL 69
           LKPI+DI++  VQ +G+LAV+ +++    E K+KF RVVNGL             +L+ L
Sbjct: 10  LKPIIDINDPHVQIIGKLAVEDHDSHNPGE-KLKFVRVVNGLKSDKYIGPGFTEVILYHL 69

Query: 70  VVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
           V+E +  +E N +Y  K++     +     I + F+SFEPVL Y K
Sbjct: 70  VLEAKTNEEINWTYATKLE----KVYSGCLIRHVFLSFEPVLPYNK 110

[Close]
BLAST of ClCG02G005490 vs. TrEMBL
Match: A0A0A0KZ98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508510 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1 

Query: 1   MSCVPKDDHLKPIVDIHEEFVQNVGRLAVDHYNNTTKRETKVKFKRVVNGLSGGVIFS-- 60
           MS       LKPI+DI++  VQ +G LAV++  +    E K+KF RVVNGL         
Sbjct: 1   MSIEESRHRLKPIIDINDPHVQALGELAVENLYSKNSGE-KLKFVRVVNGLKSDKYIGPG 60

Query: 61  -FSGVLFELVVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
               +L+ LV+E +  +E N +Y  K++     L     I + F+SFEPVL Y K
Sbjct: 61  FTEVILYHLVLEAKTNEEINWTYATKLEEVSGGL-----IRHVFLSFEPVLPYYK 109

[Close]
BLAST of ClCG02G005490 vs. NCBI nr
Match: gi|700199666|gb|KGN54824.1| (hypothetical protein Csa_4G508520 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 10  LKPIVDIHEEFVQNVGRLAVDHYNNTTKRETKVKFKRVVNGLSGGVIFS---FSGVLFEL 69
           LKPI+DI++  VQ +G+LAV+ +++    E K+KF RVVNGL             +L+ L
Sbjct: 10  LKPIIDINDPHVQIIGKLAVEDHDSHNPGE-KLKFVRVVNGLKSDKYIGPGFTEVILYHL 69

Query: 70  VVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
           V+E +  +E N +Y  K++     +     I + F+SFEPVL Y K
Sbjct: 70  VLEAKTNEEINWTYATKLE----KVYSGCLIRHVFLSFEPVLPYNK 110

[Close]
BLAST of ClCG02G005490 vs. NCBI nr
Match: gi|700199665|gb|KGN54823.1| (hypothetical protein Csa_4G508510 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1 

Query: 1   MSCVPKDDHLKPIVDIHEEFVQNVGRLAVDHYNNTTKRETKVKFKRVVNGLSGGVIFS-- 60
           MS       LKPI+DI++  VQ +G LAV++  +    E K+KF RVVNGL         
Sbjct: 1   MSIEESRHRLKPIIDINDPHVQALGELAVENLYSKNSGE-KLKFVRVVNGLKSDKYIGPG 60

Query: 61  -FSGVLFELVVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
               +L+ LV+E +  +E N +Y  K++     L     I + F+SFEPVL Y K
Sbjct: 61  FTEVILYHLVLEAKTNEEINWTYATKLEEVSGGL-----IRHVFLSFEPVLPYYK 109

The following BLAST results are available for this feature:
BLAST of ClCG02G005490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L191_CUCSA2.6e-0637.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508520 PE=4 SV=1[more]
A0A0A0KZ98_CUCSA3.4e-0637.39Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508510 PE=4 SV=1[more]
BLAST of ClCG02G005490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199666|gb|KGN54824.1|3.8e-0637.74hypothetical protein Csa_4G508520 [Cucumis sativus][more]
gi|700199665|gb|KGN54823.1|4.9e-0637.39hypothetical protein Csa_4G508510 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G005490.1ClCG02G005490.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 15..84
score: 4.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 18..96
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G005490Cla97C02G032480Watermelon (97103) v2wcgwmbB138
ClCG02G005490Bhi05G001033Wax gourdwcgwgoB275
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G005490Cucumber (Chinese Long) v3cucwcgB140
ClCG02G005490Cucumber (Chinese Long) v3cucwcgB572
ClCG02G005490Watermelon (97103) v2wcgwmbB171
ClCG02G005490Watermelon (Charleston Gray)wcgwcgB017
ClCG02G005490Watermelon (Charleston Gray)wcgwcgB086
ClCG02G005490Watermelon (Charleston Gray)wcgwcgB138
ClCG02G005490Cucumber (Gy14) v1cgywcgB156
ClCG02G005490Cucumber (Gy14) v1cgywcgB396
ClCG02G005490Cucumber (Gy14) v1cgywcgB405
ClCG02G005490Cucurbita maxima (Rimu)cmawcgB101
ClCG02G005490Cucurbita maxima (Rimu)cmawcgB460
ClCG02G005490Cucurbita maxima (Rimu)cmawcgB485
ClCG02G005490Cucurbita maxima (Rimu)cmawcgB531
ClCG02G005490Cucurbita maxima (Rimu)cmawcgB757
ClCG02G005490Cucurbita moschata (Rifu)cmowcgB088
ClCG02G005490Cucurbita moschata (Rifu)cmowcgB459
ClCG02G005490Cucurbita moschata (Rifu)cmowcgB485
ClCG02G005490Cucurbita moschata (Rifu)cmowcgB759
ClCG02G005490Wild cucumber (PI 183967)cpiwcgB131
ClCG02G005490Wild cucumber (PI 183967)cpiwcgB136
ClCG02G005490Wild cucumber (PI 183967)cpiwcgB576
ClCG02G005490Cucumber (Chinese Long) v2cuwcgB127
ClCG02G005490Cucumber (Chinese Long) v2cuwcgB547
ClCG02G005490Melon (DHL92) v3.5.1mewcgB104
ClCG02G005490Melon (DHL92) v3.5.1mewcgB197
ClCG02G005490Melon (DHL92) v3.5.1mewcgB518
ClCG02G005490Watermelon (97103) v1wcgwmB198
ClCG02G005490Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G005490Cucurbita pepo (Zucchini)cpewcgB267
ClCG02G005490Cucurbita pepo (Zucchini)cpewcgB428
ClCG02G005490Cucurbita pepo (Zucchini)cpewcgB590
ClCG02G005490Cucurbita pepo (Zucchini)cpewcgB662
ClCG02G005490Bottle gourd (USVL1VR-Ls)lsiwcgB057
ClCG02G005490Bottle gourd (USVL1VR-Ls)lsiwcgB097
ClCG02G005490Bottle gourd (USVL1VR-Ls)lsiwcgB428
ClCG02G005490Cucumber (Gy14) v2cgybwcgB122
ClCG02G005490Cucumber (Gy14) v2cgybwcgB125
ClCG02G005490Cucumber (Gy14) v2cgybwcgB507
ClCG02G005490Melon (DHL92) v3.6.1medwcgB192
ClCG02G005490Melon (DHL92) v3.6.1medwcgB272
ClCG02G005490Melon (DHL92) v3.6.1medwcgB513
ClCG02G005490Silver-seed gourdcarwcgB0203
ClCG02G005490Silver-seed gourdcarwcgB0786
ClCG02G005490Silver-seed gourdcarwcgB0868