ClCG02G001590 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACTGGAAGAAGCTGGGGTATTATGATATATCATTTTCTGTTTCACTTGATCTCCTCTATCACTCTTGATAACCAAGCCTTGGTTAATGACCAAATTGAGGAATGGGCTAACCTAATGTCTTCCTTACTGAATCCTTACTGGAGGCTTGATAGCAGAAGAAACCTAAAGTGCATTGGCTTTGAAAGTGAATTGAATATTCTATACAAACTCCTTCGCACAAGGCCGGAAACTCCAGGCCTATATGCATACATGTGGGAATCTTCAAAACAATACCTATCTCAGCTCTAAACTTGCTGCATGACAGAATCCCAAGTGATTTTCAATGGGGTTGCTTTAAAAATTTATTTCCTGTGGAATTTTATGATAAGAGGTTATGCTTCTGATGGTACTAATGCTTACAAGGCCCTTGATATGTTTCGTAAAATGCTAGCATTAGGATTTACGCTGCTATTAAACAATGGACTGTTGCGGAAAAGGTGAGGCCTACGATGAGAAAACATGGATTGAAAAAACCTGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATACGTTCTTTGTTGGAGACAAATCACACCAACAGACAAAAGATATATATGCCAAATTGAAGGATATAAATTCGCTACTCAAGGAGGATGGGTACAAGCCCGATACAAGTCTGGTGTTATATGATGTCCATGAAGAACAAAAAGAGAAGATTCTTTGGGATCATAGTGAGCGGTTGGCCATTGCTTTTGCTCTTCTAAATACCTCTCCAGGCACTAAAATTAGGATAACTAAGAATCTTCGAGTATGTGTAGATTGCCACACGGTAGCAAAATTAATATCAAAACTCATGGATCGAGAAATCTTCAGGTTTCACCATTTTATTGATGGCCTTTGTTCTTGTGGTGATTACATAACTTTGTTTCATATCAAATTTATTCAAAAACAAGAGGTATGGTATTTCTTATATATGAACTTTGTAGCAATCCTTTTATAGTTAGCAATTAAATATGTTCATGGTTCTTTCTAAGTATCATGCTTGGTAACCATAGGTTTCACCATTTTATAGATAG ATGGCTACTGGAAGAAGCTGGGGTATTATGATATATCATTTTCTGTTTCACTTGATCTCCTCTATCACTCTTGATAACCAAGCCTTGGTTAATGACCAAATTGAGGAATGGGCTAACCTAATGTCTTCCTTACTGAATCCTTACTGGAGGCTTGATAGCAGAAGAAACCTAAAGTGCATTGGCTTTGAAAGTGAATTGAATATTCTATACAAACTCCTTCGCACAAGGCCGGAAACTCCAGGCCTATATGCATACATCATTAGGATTTACGCTGCTATTAAACAATGGACTGTTGCGGAAAAGGTGAGGCCTACGATGAGAAAACATGGATTGAAAAAACCTGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATACGTTCTTTGTTGGAGACAAATCACACCAACAGACAAAAGATATATATGCCAAATTGAAGGATATAAATTCGCTACTCAAGGAGGATGGGTACAAGCCCGATACAAGTCTGGTGTTATATGATGTCCATGAAGAACAAAAAGAGAAGATTCTTTGGGATCATAGTGAGCGGTTGGCCATTGCTTTTGCTCTTCTAAATACCTCTCCAGGCACTAAAATTAGGATAACTAAGAATCTTCGAGTATGTGTAGATTGCCACACGGTAGCAAAATTAATATCAAAACTCATGGATCGAGAAATCTTCAGGTTTCACCATTTTATTGATGGCCTTTGTTCTTGTGGTGATTACATAACTTTGTTTCATATCAAATTTATTCAAAAACAAGAGGTTTCACCATTTTATAGATAG ATGGCTACTGGAAGAAGCTGGGGTATTATGATATATCATTTTCTGTTTCACTTGATCTCCTCTATCACTCTTGATAACCAAGCCTTGGTTAATGACCAAATTGAGGAATGGGCTAACCTAATGTCTTCCTTACTGAATCCTTACTGGAGGCTTGATAGCAGAAGAAACCTAAAGTGCATTGGCTTTGAAAGTGAATTGAATATTCTATACAAACTCCTTCGCACAAGGCCGGAAACTCCAGGCCTATATGCATACATCATTAGGATTTACGCTGCTATTAAACAATGGACTGTTGCGGAAAAGGTGAGGCCTACGATGAGAAAACATGGATTGAAAAAACCTGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATACGTTCTTTGTTGGAGACAAATCACACCAACAGACAAAAGATATATATGCCAAATTGAAGGATATAAATTCGCTACTCAAGGAGGATGGGTACAAGCCCGATACAAGTCTGGTGTTATATGATGTCCATGAAGAACAAAAAGAGAAGATTCTTTGGGATCATAGTGAGCGGTTGGCCATTGCTTTTGCTCTTCTAAATACCTCTCCAGGCACTAAAATTAGGATAACTAAGAATCTTCGAGTATGTGTAGATTGCCACACGGTAGCAAAATTAATATCAAAACTCATGGATCGAGAAATCTTCAGGTTTCACCATTTTATTGATGGCCTTTGTTCTTGTGGTGATTACATAACTTTGTTTCATATCAAATTTATTCAAAAACAAGAGGTTTCACCATTTTATAGATAG MATGRSWGIMIYHFLFHLISSITLDNQALVNDQIEEWANLMSSLLNPYWRLDSRRNLKCIGFESELNILYKLLRTRPETPGLYAYIIRIYAAIKQWTVAEKVRPTMRKHGLKKPAGYSLIELDSQVHTFFVGDKSHQQTKDIYAKLKDINSLLKEDGYKPDTSLVLYDVHEEQKEKILWDHSERLAIAFALLNTSPGTKIRITKNLRVCVDCHTVAKLISKLMDREIFRFHHFIDGLCSCGDYITLFHIKFIQKQEVSPFYR
BLAST of ClCG02G001590 vs. Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 9.7e-45 Identity = 90/178 (50.56%), Postives = 117/178 (65.73%), Query Frame = 1
BLAST of ClCG02G001590 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.8e-44 Identity = 88/177 (49.72%), Postives = 113/177 (63.84%), Query Frame = 1
BLAST of ClCG02G001590 vs. Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 2.4e-43 Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 1
BLAST of ClCG02G001590 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 176.4 bits (446), Expect = 4.1e-43 Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 1
BLAST of ClCG02G001590 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 3.4e-42 Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = 1
BLAST of ClCG02G001590 vs. TrEMBL
Match: A0A0B2QSR9_GLYSO (Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=glysoja_020793 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57 Identity = 113/178 (63.48%), Postives = 130/178 (73.03%), Query Frame = 1
BLAST of ClCG02G001590 vs. TrEMBL
Match: I1LRU2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G102800 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57 Identity = 113/178 (63.48%), Postives = 130/178 (73.03%), Query Frame = 1
BLAST of ClCG02G001590 vs. TrEMBL
Match: A0A151S678_CAJCA (Pentatricopeptide repeat-containing protein At4g30700 family OS=Cajanus cajan GN=KK1_027900 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56 Identity = 120/212 (56.60%), Postives = 143/212 (67.45%), Query Frame = 1
BLAST of ClCG02G001590 vs. TrEMBL
Match: M5WUT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020947mg PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55 Identity = 110/178 (61.80%), Postives = 128/178 (71.91%), Query Frame = 1
BLAST of ClCG02G001590 vs. TrEMBL
Match: A0A067K248_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22909 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55 Identity = 122/219 (55.71%), Postives = 143/219 (65.30%), Query Frame = 1
BLAST of ClCG02G001590 vs. TAIR10
Match: AT4G30700.1 (AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 181.8 bits (460), Expect = 5.5e-46 Identity = 90/178 (50.56%), Postives = 117/178 (65.73%), Query Frame = 1
BLAST of ClCG02G001590 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 179.5 bits (454), Expect = 2.7e-45 Identity = 88/177 (49.72%), Postives = 113/177 (63.84%), Query Frame = 1
BLAST of ClCG02G001590 vs. TAIR10
Match: AT3G26782.1 (AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44 Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 1
BLAST of ClCG02G001590 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 176.4 bits (446), Expect = 2.3e-44 Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 1
BLAST of ClCG02G001590 vs. TAIR10
Match: AT4G33170.1 (AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 173.3 bits (438), Expect = 1.9e-43 Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = 1
BLAST of ClCG02G001590 vs. NCBI nr
Match: gi|470105560|ref|XP_004289150.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Fragaria vesca subsp. vesca]) HSP 1 Score: 240.4 bits (612), Expect = 3.7e-60 Identity = 126/212 (59.43%), Postives = 148/212 (69.81%), Query Frame = 1
BLAST of ClCG02G001590 vs. NCBI nr
Match: gi|502165367|ref|XP_004513547.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Cicer arietinum]) HSP 1 Score: 233.8 bits (595), Expect = 3.4e-58 Identity = 120/205 (58.54%), Postives = 144/205 (70.24%), Query Frame = 1
BLAST of ClCG02G001590 vs. NCBI nr
Match: gi|731409822|ref|XP_010657333.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Vitis vinifera]) HSP 1 Score: 231.5 bits (589), Expect = 1.7e-57 Identity = 116/178 (65.17%), Postives = 130/178 (73.03%), Query Frame = 1
BLAST of ClCG02G001590 vs. NCBI nr
Match: gi|694324436|ref|XP_009353237.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Pyrus x bretschneideri]) HSP 1 Score: 229.9 bits (585), Expect = 5.0e-57 Identity = 113/172 (65.70%), Postives = 129/172 (75.00%), Query Frame = 1
BLAST of ClCG02G001590 vs. NCBI nr
Match: gi|955353870|ref|XP_014620273.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Glycine max]) HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56 Identity = 113/178 (63.48%), Postives = 130/178 (73.03%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |