ClCG02G001340 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G001340
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Wound-responsive family protein LENGTH=83
Location	CG_Chr02 : 1503630 .. 1503878 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

mRNA sequence

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSANHLQQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of ClCG02G001340 vs. TrEMBL
Match: A0A0A0K6Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. TrEMBL
Match: A0A0A0K5N2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-35
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. TrEMBL
Match: A0A0A0K3P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-25
Identity = 62/85 (72.94%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSS---AVP 60
          MS   +  VVAA+VGVVEALKDQGICRWNH +RS   YA+NHVRSISQAKKLSS   A  
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SANHLQQSEESLRTVMYLSCWGPNN 83
          S +   QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of ClCG02G001340 vs. TrEMBL
Match: I3SKC5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSA- 60
          MSS++RA  VAA+VGVVEALKDQG+CRWN V+RSA H+ +NHVRS+SQAKKLSS+  S+ 
Sbjct: 2  MSSASRAWTVAASVGVVEALKDQGLCRWNSVIRSAQHHVKNHVRSLSQAKKLSSSSSSSA 61

Query: 61 ---------NHLQQSEESLRTVMYLSCWGPNN 83
                      ++SEESLRTVMYLSCWGPNN
Sbjct: 62 MVSNRSLKEEEAKKSEESLRTVMYLSCWGPNN 93

[Close]

BLAST of ClCG02G001340 vs. TrEMBL
Match: A0A0B2S8V4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017207 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSS  RA  VA +VGVVEALKDQGICRWNH LRSA H+ +NHV S SQA KLSS+  S+ 
Sbjct: 1  MSSGIRAWSVATSVGVVEALKDQGICRWNHALRSAQHHLKNHVGSFSQANKLSSSAMSST 60

Query: 61 HLQ-----QSEESLRTVMYLSCWGPN 82
           L+     QSEESLRTVMYLSCWGPN
Sbjct: 61 TLKHEKTNQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of ClCG02G001340 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.2e-25
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHVLRSAHHYARNHVRSISQAKKL-SSAVPS 60
          MSS+++  +VAA++G VEALKDQ G+CRWN+V+RSA+ Y RN++RS+SQAKKL SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANHLQQSEESLRTVMYLSCWGPN 82
           N  +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of ClCG02G001340 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 99.8 bits (247), Expect = 8.5e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSA 60
          MSS+++A  VA ++G VEALKDQ G+CRWN++LRS + + RN+VRS+SQ K+ SS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NHLQQSEESLRTVMYLSCWGPN 82
                     +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of ClCG02G001340 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-06
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1


Query: 10 VAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLS--SAVPSANHLQQS-- 69
          VA  +  VE LKDQG+ RWN++ R  H  A   VR+I+   + S  ++  SA  ++    
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 -----EESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: gi|449438060|ref|XP_004136808.1| (PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: gi|659110685|ref|XP_008455358.1| (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-35
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV SISQAKK SSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: gi|449438058|ref|XP_004136807.1| (PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: gi|659110681|ref|XP_008455355.1| (PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSS---AVP 60
          MS S +  VVAA+VGVVEALKDQGICRWNH +RS   YA+NHVRSISQAKKLSS   A  
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SANHLQQSEESLRTVMYLSCWGPNN 83
          S +  +QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: gi|659110683|ref|XP_008455356.1| (PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKL---SSAVP 60
          MSSS RA +VAA+VGVVEALKDQGICRWNH +RSAH YARNHVRS+ QA +L   S+AV 
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SANHLQ-QSEESLRTVMYLSCWGPN 82
          S+   Q QSEESLRTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

The following BLAST results are available for this feature:

BLAST of ClCG02G001340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y8_CUCSA	3.6e-37	96.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1	[more]
A0A0A0K5N2_CUCSA	7.5e-35	91.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1	[more]
A0A0A0K3P5_CUCSA	7.1e-25	72.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1	[more]
I3SKC5_LOTJA	1.6e-24	65.22	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2S8V4_GLYSO	1.3e-23	69.77	Uncharacterized protein OS=Glycine soja GN=glysoja_017207 PE=4 SV=1	[more]

BLAST of ClCG02G001340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	8.2e-25	63.86	Wound-responsive family protein	[more]
AT4G10270.1	8.5e-22	55.56	Wound-responsive family protein	[more]
AT4G33560.1	1.7e-06	36.25	Wound-responsive family protein	[more]

BLAST of ClCG02G001340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438060\|ref\|XP_004136808.1\|	5.2e-37	96.34	PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus]	[more]
gi\|659110685\|ref\|XP_008455358.1\|	2.2e-35	92.68	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo]	[more]
gi\|449438058\|ref\|XP_004136807.1\|	1.1e-34	91.46	PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus]	[more]
gi\|659110681\|ref\|XP_008455355.1\|	1.6e-25	74.12	PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo]	[more]
gi\|659110683\|ref\|XP_008455356.1\|	2.0e-25	75.29	PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G001340.1	ClCG02G001340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 score: 9.3
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..81 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G001340	Cucurbita maxima (Rimu)	cmawcgB102
ClCG02G001340	Cucurbita maxima (Rimu)	cmawcgB190
ClCG02G001340	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G001340	Cucurbita maxima (Rimu)	cmawcgB532
ClCG02G001340	Cucurbita maxima (Rimu)	cmawcgB580
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB094
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB181
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB484
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB529
ClCG02G001340	Cucurbita moschata (Rifu)	cmowcgB576
ClCG02G001340	Wild cucumber (PI 183967)	cpiwcgB036
ClCG02G001340	Wild cucumber (PI 183967)	cpiwcgB478
ClCG02G001340	Wild cucumber (PI 183967)	cpiwcgB574
ClCG02G001340	Cucumber (Chinese Long) v2	cuwcgB032
ClCG02G001340	Cucumber (Chinese Long) v2	cuwcgB456
ClCG02G001340	Cucumber (Chinese Long) v2	cuwcgB546
ClCG02G001340	Melon (DHL92) v3.5.1	mewcgB146
ClCG02G001340	Melon (DHL92) v3.5.1	mewcgB195
ClCG02G001340	Melon (DHL92) v3.5.1	mewcgB519
ClCG02G001340	Watermelon (97103) v1	wcgwmB183
ClCG02G001340	Watermelon (97103) v1	wcgwmB194
ClCG02G001340	Watermelon (97103) v1	wcgwmB206
ClCG02G001340	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G001340	Cucurbita pepo (Zucchini)	cpewcgB596
ClCG02G001340	Cucurbita pepo (Zucchini)	cpewcgB665
ClCG02G001340	Bottle gourd (USVL1VR-Ls)	lsiwcgB060
ClCG02G001340	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G001340	Bottle gourd (USVL1VR-Ls)	lsiwcgB128
ClCG02G001340	Cucumber (Gy14) v2	cgybwcgB506
ClCG02G001340	Melon (DHL92) v3.6.1	medwcgB137
ClCG02G001340	Melon (DHL92) v3.6.1	medwcgB190
ClCG02G001340	Melon (DHL92) v3.6.1	medwcgB514
ClCG02G001340	Silver-seed gourd	carwcgB0032
ClCG02G001340	Silver-seed gourd	carwcgB0329
ClCG02G001340	Silver-seed gourd	carwcgB0624
ClCG02G001340	Silver-seed gourd	carwcgB0696
ClCG02G001340	Silver-seed gourd	carwcgB0851
ClCG02G001340	Cucumber (Chinese Long) v3	cucwcgB036
ClCG02G001340	Cucumber (Chinese Long) v3	cucwcgB476
ClCG02G001340	Cucumber (Chinese Long) v3	cucwcgB571
ClCG02G001340	Watermelon (97103) v2	wcgwmbB138
ClCG02G001340	Watermelon (97103) v2	wcgwmbB155
ClCG02G001340	Wax gourd	wcgwgoB276
ClCG02G001340	Wax gourd	wcgwgoB295
ClCG02G001340	Wax gourd	wcgwgoB310
ClCG02G001340	Watermelon (Charleston Gray)	wcgwcgB088
ClCG02G001340	Watermelon (Charleston Gray)	wcgwcgB123
ClCG02G001340	Cucumber (Gy14) v1	cgywcgB023
ClCG02G001340	Cucumber (Gy14) v1	cgywcgB248