ClCG02G000480 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G000480
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 518197 .. 520123 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCCTCCTCTACCTTGGTCGGATTTGATCCGAATCCCAGCTGCCGAATCCCAAACGTTTAAATCCTCGATCGTAATGTTTGATATTCCACCCGACATCTCACTTCCTATTCCAACACCAGAACAGGTTGGAGTGGTGCCAGAAACTCGCCTTATGATGATGTTCGAGCTCGGGCGTGCAAGGTTGATTCCATATTGATCCCATCCGCTCTTCACTGCTACTAGATCATCTCCGCTTTCAATGTAACAGTCCTCGATACAAACATTGGTACTCGAATCTACACCATAAGATCATTTGGAGTTTAGAAACCTTCACCATTGTTTTCTTTTATTTCTCATACCTCCTCCAAGAAAGACGCAAAATACCTGGATCGATACCGTCTGTGTTCGGGGCATTGAGCGGAGCCAAGATGGTCATGTCTTTGATAACAACATTGCTGAAATTATAAAAGGAAAACAAAGAGAAATTTAAGAAACAAAACACAAGTCTATAGAATGACAGAGAGAATATTGAGAACGAAACCTGCAATAGACAGGATGGATGGTCCAAAAGGGGGAATTTTTGAAGGTGAGATTGGAGATGAGAATATTGTGAGAGTTCATGAGCTCTACAAGATGGCCCCTTGTGTGATTTAATGTTCTATTCCACCAAAGGTCCCACCACATCTTGCCTTGCCCATCAATGGTTCCATTCTGTCCTGGAAAACAACACACAAACTCATCAAATTTTCATTATTTAGAACATTCTCGAAACCGAGTGCGAATCAAAGCTAAATGAGAAGAAGAGTTCACACTATTTCGAGTTTCAATACACTAAGCTAATGTAGATCAAAAGTTATGATCTCATTCTATCTTTTTTGTAAGGTAGTTAAAAACTTTTTATGCCTAATCTTTATGGATTGGCTCTACGGGTATTTATTTAAATTCAACAATACGTGCAAGTGAGGGTTCAAACATCAAATATTTTGGTCAAAGTTATATATGCTTTAACTAGTTGAACTATCGTAGTCACGTTGGTGGCCAACTAATATTTATTTAGGTATGGTAAAAAGCAAGAGAATCAAAGAAAAAAATATGTGGGTCGAGTAGTCCTAGAATGTGCATCTTATGCTTTAGATTCAAATACCTAACTTTTCTCATTTCATTTTTCTCTTTTTTTTTTTTTTTGCTAATTTGTGAGTGTCCAAGCCAACTTATGTTCAACCTCAACTAATCTTACTGTGACAACCCGTCTGACCACCTTACAACATTTGAGGGTCAAGGAAATTTGTAGAATATTAAACCCTAGGCAGGCAGGTGACCACCATAGATTGAACTCATTCCCTTTTAGCCATTTATCAAACCCGAGTCTTTCACACCTTATGTGATCCCTTAACGTAAAATCTTTCAATCTTCTTGACAACCAGAATGTATCAAAGGTCACGTGACTTTTTACAAAATTTCCTTTATTGATTTTTTTTTTTTTTTTTTAAAGAAACATTTCATTGATAAATGAAATAAGGGGAAAACCCCAAAACACCTATAGGTGATTATAAGAAAGATTGCCAATTGGTAACTAGAAAAAATAAACCATAATAGTTAAAAGGGTGATTAATTTTGCACTATGAAAAAACAGTAAAGAGAACTGATTCCAAAAATCTACCAAAAGAGGAAAAACAATCACGAAAAAGACGACCGTAATGGTTAAAAGGGTCCTTTATTGAAAATTTCACTTTTTTAAAAACACTTTATGAGGTAAAGTGACGTTGCTACTACGATCCATTGAGATTCAAACCTACGTCGCTCTAATTCATCCCTTCCCGCACATAAAAACACAAGCAAAGAAGCATAATCTTGAGATACAGAAATAATATTCCTGGCCCTAAATTTTTTCCTTTTTTAATCTTATCTTGGTTTCTAATAGCTTAGTCATGATCAGAGTTTGA

mRNA sequence

ATGTGGCCTCCTCTACCTTGGTCGGATTTGATCCGAATCCCAGCTGCCGAATCCCAAACGTTTAAATCCTCGATCGTAATGTTTGATATTCCACCCGACATCTCACTTCCTATTCCAACACCAGAACAGGTTGGAGTGGTGCCAGAAACTCGCCTTATGATGATGTTCGAGCTCGGGCGTGCAAGCTTAGTCATGATCAGAGTTTGA

Coding sequence (CDS)

ATGTGGCCTCCTCTACCTTGGTCGGATTTGATCCGAATCCCAGCTGCCGAATCCCAAACGTTTAAATCCTCGATCGTAATGTTTGATATTCCACCCGACATCTCACTTCCTATTCCAACACCAGAACAGGTTGGAGTGGTGCCAGAAACTCGCCTTATGATGATGTTCGAGCTCGGGCGTGCAAGCTTAGTCATGATCAGAGTTTGA

Protein sequence

MWPPLPWSDLIRIPAAESQTFKSSIVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELGRASLVMIRV
Homology
[Close]
BLAST of ClCG02G000480 vs. TrEMBL
Match: A0A0A9QNA9_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-10
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 1  MWPPLPWSDLIRIPAAESQTFKSSIVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELG 60
          M+PP P S L  I  AE  T++S    FD+PPDISLP PTPE VGVVPET  M MFELG
Sbjct: 6  MYPPRPTSVLSLIADAEFHTWRSRTSTFDMPPDISLPKPTPEHVGVVPETLWMTMFELG 64

[Close]
BLAST of ClCG02G000480 vs. NCBI nr
Match: gi|297743383|emb|CBI36250.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 25 IVMFDIPPDISLPIPTPEQVGVVPETRLMMMFELGRA 62
          +V F+I PDISLPIPTPE VGV+PE+  +M+FELGRA
Sbjct: 1  MVTFEISPDISLPIPTPEHVGVIPESLFIMIFELGRA 37

The following BLAST results are available for this feature:
BLAST of ClCG02G000480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9QNA9_ARUDO4.1e-1062.71Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of ClCG02G000480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297743383|emb|CBI36250.3|5.1e-0670.27unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G000480.1ClCG02G000480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G000480Cucumber (Gy14) v2cgybwcgB121
ClCG02G000480Melon (DHL92) v3.6.1medwcgB089
ClCG02G000480Silver-seed gourdcarwcgB0694
ClCG02G000480Silver-seed gourdcarwcgB1030
ClCG02G000480Cucumber (Chinese Long) v3cucwcgB139
ClCG02G000480Watermelon (97103) v2wcgwmbB138
ClCG02G000480Wax gourdwcgwgoB303
ClCG02G000480Cucurbita maxima (Rimu)cmawcgB482
ClCG02G000480Cucurbita maxima (Rimu)cmawcgB544
ClCG02G000480Cucurbita moschata (Rifu)cmowcgB480
ClCG02G000480Cucurbita moschata (Rifu)cmowcgB540
ClCG02G000480Wild cucumber (PI 183967)cpiwcgB096
ClCG02G000480Cucumber (Chinese Long) v2cuwcgB126
ClCG02G000480Melon (DHL92) v3.5.1mewcgB091
ClCG02G000480Watermelon (97103) v1wcgwmB206
ClCG02G000480Cucurbita pepo (Zucchini)cpewcgB268
ClCG02G000480Cucurbita pepo (Zucchini)cpewcgB274
ClCG02G000480Cucurbita pepo (Zucchini)cpewcgB647
ClCG02G000480Bottle gourd (USVL1VR-Ls)lsiwcgB056