ClCG01G023760 (gene) Watermelon (Charleston Gray)

NameClCG01G023760
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionGK19179, related
LocationCG_Chr01 : 37014994 .. 37017351 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTGTATCAATGTTGAGAACATTGTTCCTTTAACGAAGGCAGCCTCCATGTTGAGTGAGATTGGTAAGGAAGTATGCCTCAAATTTTCACCCACCATGTTCACCATAACTACTCTTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCACAAATTCTCAGCAATCCTAATTTTGCCAAGCTCCTCATTCGCCAACTATTCCGTCGATCGCAATCACAGTTCAAAGGTTTCCCTCCGATCCTTCCAGAATGCTTTATTGCAAGGCCGGAGGTTTTCTTCAATCACCATCCATCTTCTCGAACCCCTAAATCGCTTACTCCTTAGATTTCACCTTCAGCCTTCAGGTTAAGTGCTTGTTTTAATTTCTATGCATTATATATTATTATTATTATTATTATTTAAAAAAGATTACGATAGTGGGTTGGAGGTTGGCAGCCTCGTAACACCCCCATCCTATCCAACTCAATTTCATTAAAAATATATATAGCATATGAGCAAGAGGGTTGGAGAGGAGCCACAGGGCAGTCAGATGGGTAAGATTTTAGCTCGAGAAGATCAAAATTTGAAGATTTGGGTTGTTCCTCTCCTTCCAAATGACCTAACAAATAGCAACACTGAGGGGTTGAAATATATATTATTATTTATTTAATTACCTACCTCCTTAATAATAATCTTCCCTTTCTTTAATTTCAGAGTCTTATTCGGCACAACCATTGCATTATCATGAATTGGAATTATTTCCTTTGGAAGATTGGAAAGATCCTGCCCGAATTAGGTTAAATCAAAAGCATTTTTCAATTGATTCACAATGCTTCAAACGTATTATTCAAACATTCTCTCTCTACGATAATCAAACTTCTTCAAGTAATTATTAAACTCTTCCTTTCTTTTTCCTTCCATTTTCTTCATATATATATTGCTAACATTATTATATTTGTCATTATAGTTTCTATTATTTCAAAGGGTACTTCTGTCACCTTCTCCATTTTGCCATTTGCGGAGATTACTCTTAGTGAAGAGGTATGTTCACATCTAATTAAATTCCATCATTTTCAAATAGTCTACTCTTTAATTTCTTCTTACACTTTAATGGATGAGTAGTATAATTAAACCCAGTGAACATGTATTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAGACACTAGTTTGAAGATTGAATGATCCCTATCGGATCTCGAGTATGATGACAGGTGCTAATTAGGGTATACCTACTCACCTACTAACTTCTTAATAACACTAGTTTAAATGGTTTTTATCATTTAGTTTAAATGGTTTTTATCATTTCCTTTAAATCATTTTCTATATATAACAAAACCAATTTTTTTATTAAAAAAATTAAACTATTGACATTTTTACTAAAACTTTTACATATTGTATTTTCTGGCAGTTGGGACAATGCTCCTTCCGAGGCGAGGAAGAAGATGAAGTTGATATAAAAATCAACATCAATCCCGCTTCGTTTTTTATTAGTTTGGCAAATCAAGTACAAAGGGTATCATTCTTCCACAAAAATAATGATGATTCTCATATTGCAATAATGTATTTCCCTTTTGGAGGGGAATCTCATGGTATGCTCATTTCTTTCCCCCAAATATGACATTGGCAAAGTTTTTATTTATTTATTATTTATTTTTTTATTTTTTTTTTTTAAGAAAAAGAAGAAAAAGATAGGGTAGTGTTTCTTGGTTTGAATGTTGTTCATTTCAGAGTTCCAAGATTTCCCTTGAATCCTTCCATGATGCTATGTTTTGTTCAATGACTATCCAACTTTTGGACAAAATAAACCAAATGATCCTTAGATTATTTGAGACTTCA

mRNA sequence

ATGATTTGTATCAATGTTGAGAACATTGTTCCTTTAACGAAGGCAGCCTCCATGTTGAGTGAGATTGGTAAGGAAGTATGCCTCAAATTTTCACCCACCATGTTCACCATAACTACTCTTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCACAAATTCTCAGCAATCCTAATTTTGCCAAGCTCCTCATTCGCCAACTATTCCGTCGATCGCAATCACAGTTCAAAGGTTTCCCTCCGATCCTTCCAGAATGCTTTATTGCAAGGCCGGAGGTTTTCTTCAATCACCATCCATCTTCTCGAACCCCTAAATCGCTTACTCCTTAGATTTCACCTTCAGCCTTCAGTTTCTATTATTTCAAAGGGTACTTCTGTCACCTTCTCCATTTTGCCATTTGCGGAGATTACTCTTAGTGAAGAGTTGGGACAATGCTCCTTCCGAGGCGAGGAAGAAGATGAAGTTGATATAAAAATCAACATCAATCCCGCTTCGTTTTTTATTAGTTTGGCAAATCAAGTACAAAGGGTATCATTCTTCCACAAAAATAATGATGATTCTCATATTGCAATAATTTCCAAGATTTCCCTTGAATCCTTCCATGATGCTATGTTTTGTTCAATGACTATCCAACTTTTGGACAAAATAAACCAAATGATCCTTAGATTATTTGAGACTTCA

Coding sequence (CDS)

ATGATTTGTATCAATGTTGAGAACATTGTTCCTTTAACGAAGGCAGCCTCCATGTTGAGTGAGATTGGTAAGGAAGTATGCCTCAAATTTTCACCCACCATGTTCACCATAACTACTCTTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCACAAATTCTCAGCAATCCTAATTTTGCCAAGCTCCTCATTCGCCAACTATTCCGTCGATCGCAATCACAGTTCAAAGGTTTCCCTCCGATCCTTCCAGAATGCTTTATTGCAAGGCCGGAGGTTTTCTTCAATCACCATCCATCTTCTCGAACCCCTAAATCGCTTACTCCTTAGATTTCACCTTCAGCCTTCAGTTTCTATTATTTCAAAGGGTACTTCTGTCACCTTCTCCATTTTGCCATTTGCGGAGATTACTCTTAGTGAAGAGTTGGGACAATGCTCCTTCCGAGGCGAGGAAGAAGATGAAGTTGATATAAAAATCAACATCAATCCCGCTTCGTTTTTTATTAGTTTGGCAAATCAAGTACAAAGGGTATCATTCTTCCACAAAAATAATGATGATTCTCATATTGCAATAATTTCCAAGATTTCCCTTGAATCCTTCCATGATGCTATGTTTTGTTCAATGACTATCCAACTTTTGGACAAAATAAACCAAATGATCCTTAGATTATTTGAGACTTCA

Protein sequence

MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHLLEPLNRLLLRFHLQPSVSIISKGTSVTFSILPFAEITLSEELGQCSFRGEEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIISKISLESFHDAMFCSMTIQLLDKINQMILRLFETS
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G023760.1ClCG01G023760.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 4..116
score: 4.
NoneNo IPR availableunknownSSF55979DNA clampcoord: 4..116
score: 1.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G023760Cla009696Watermelon (97103) v1wcgwmB141
ClCG01G023760Cla97C01G023710Watermelon (97103) v2wcgwmbB089
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G023760Cucurbita pepo (Zucchini)cpewcgB027
ClCG01G023760Cucurbita pepo (Zucchini)cpewcgB062
ClCG01G023760Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G023760Cucurbita pepo (Zucchini)cpewcgB450
ClCG01G023760Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G023760Bottle gourd (USVL1VR-Ls)lsiwcgB170
ClCG01G023760Cucumber (Gy14) v2cgybwcgB024
ClCG01G023760Cucumber (Gy14) v2cgybwcgB399
ClCG01G023760Melon (DHL92) v3.6.1medwcgB131
ClCG01G023760Melon (DHL92) v3.6.1medwcgB510
ClCG01G023760Silver-seed gourdcarwcgB0143
ClCG01G023760Silver-seed gourdcarwcgB0531
ClCG01G023760Silver-seed gourdcarwcgB0772
ClCG01G023760Cucumber (Chinese Long) v3cucwcgB027
ClCG01G023760Cucumber (Chinese Long) v3cucwcgB455
ClCG01G023760Cucumber (Chinese Long) v3cucwcgB562
ClCG01G023760Watermelon (97103) v2wcgwmbB104
ClCG01G023760Wax gourdwcgwgoB227
ClCG01G023760Wax gourdwcgwgoB242
ClCG01G023760Watermelon (Charleston Gray)wcgwcgB093
ClCG01G023760Watermelon (Charleston Gray)wcgwcgB110
ClCG01G023760Cucumber (Gy14) v1cgywcgB022
ClCG01G023760Cucumber (Gy14) v1cgywcgB384
ClCG01G023760Cucurbita maxima (Rimu)cmawcgB185
ClCG01G023760Cucurbita maxima (Rimu)cmawcgB344
ClCG01G023760Cucurbita maxima (Rimu)cmawcgB754
ClCG01G023760Cucurbita maxima (Rimu)cmawcgB576
ClCG01G023760Cucurbita moschata (Rifu)cmowcgB755
ClCG01G023760Cucurbita moschata (Rifu)cmowcgB176
ClCG01G023760Cucurbita moschata (Rifu)cmowcgB339
ClCG01G023760Cucurbita moschata (Rifu)cmowcgB573
ClCG01G023760Wild cucumber (PI 183967)cpiwcgB028
ClCG01G023760Wild cucumber (PI 183967)cpiwcgB453
ClCG01G023760Cucumber (Chinese Long) v2cuwcgB025
ClCG01G023760Cucumber (Chinese Long) v2cuwcgB432
ClCG01G023760Melon (DHL92) v3.5.1mewcgB138
ClCG01G023760Melon (DHL92) v3.5.1mewcgB515
ClCG01G023760Watermelon (97103) v1wcgwmB125
ClCG01G023760Watermelon (97103) v1wcgwmB129