ClCG01G021540 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G021540
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ralf-like 28 LENGTH=85
Location	CG_Chr01 : 35311547 .. 35315653 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGGTGGATGAGGACGCTATATAACTATTACATACAAATTTCAAACAACTTTTAGCATTATTTTGTCAACCATATAGTGTTGGTCTTTTCTAATGATTATATTTGTTGTATCATTATTTTGTCAACCATATCGTGTTGGGCATTTTCTAATGATTATATTCGTTGCACAAGCACGACCAAGGTTTTTTTTTATAATTTTTTATTTAGTTATATGTTGTCTTAATCAGTTGAACTATGCTAATAATTAGGATTTGCTAATGTTCAACCAAAATCAATTTATTTTATCATAATAATAGGTGTTTTGTTACGAAATAGTTTAACTTAACGGTAATTGGCGTGACCTTTCTCCTTGAAGTTGAAGGTTCGATCTCCATATTCTCACAATCGTTGTACTAAAAAAAATATATGAATAGAGATTCAAACTTTGTAATTTGGTTGAATATATATATCTTAACTAGTTGAACTATGGTTAAAAAATACAAAATTAATATAAATCAACCTTAATAAATTATGTAGGTAAGATTAGTGAGTTTTATTGTACTAATGATTTAAGTATCAAGTAATAAGTCATATTAGTCGAAAATGTCAGGAGGTTGTTGGCATTGTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAAATGAGAAAGAGAATCGCTTTTCAAAGGCAAAAGAAACAATGAAGGCTAAATATTACACCTCAACCATTTTATGTTAAGCACTTTTTAATTCACCAAATCAACACAAAATCATTATATATAAATTATATTCTCTTCAATTTCCCCCCGTCCCAACTGAGTAGATTTTGGTTTCCATTATACATTTAATATGTGAAAAAAAAAATAGGGACAACGAACCAAAATTCAACCAAAATGAAAATTCGTTATAAAGGATGAAAATATTTTTAATTGAAAAATAAAATATGACAAAATTACATTAATAATTTACCTTCAAATTCTATAAACTTAAGCAAAATCTGACCCAGCTATTAGTTTGGACCTTTTCTTAAAATAAAAAAAATATATATATATAATTTATTCATTTTCTTCTAGTAACAAATAAAGGAATTTGTTATGAATTTACATCTTTCAAATCGCGTGGTTTCGAACATAGCATATATTAACTTATATGATTAAAGTAAGTTTGAGATTACTTTTAGAAGAGTAAAAAGTAGAGGTGCAACATAAAATAAGAAAAATTGAATTATGGTAGTTTGATTTACCCAAATCTATAGAGGGTTGTTTTCAAATATAGCAAAGATGAGCTAATATATTAAATGCCTAACAAAACCTGAGAAACAAGCATGCCCTAAGTGGTGGATTGTTTCTGGTTTTGGGTGACTTTCAGTTTTCATATTTTATTACAAAAAAATTGAACTTTCATGATATATCACCATTTAAGTTTTGAACTTTTATATCTGTATCCAAACAAAACATAATAAAGAGATTTAAATTGATACAATTATGAAAATTCAAGGTTTAAATTAATATATTAAAAAAAGTTAGAGGCTAAATCGATAAAATTATTAGTTTGGAGTTTAATAATTGATAGAACCCAAAATTTAAGGTTTAAATTGATATTTATCTTAAAATTTATTAATTAAAACTACAAGATTTCACGTGATGAATCTTAGATAAAAATGGATCAGAAAAATAAATGTGTGTCCATTTTGAGAAAACAACGTGGCACATCCCCTCATTTCAGCAGCCGGTTTCATAGACTTTGCTCGAAATGTAATGGCAATCACAGAAAAACCCACTAAATTAAGCAAAACCCAACCGTTCTTAAAAATAGAAGTGGAAACAAATTGATGGATGGTTGCCTCAAAAGACAATATAAATTGAGATCCATTGGTTCATTTCTCTTCGCCTTCATTCAAATTAATAGAGTTGAAGCCAAGAAGATATTAGAAAAGTAAAAGGTCAATATACTCAATACAAAATGGCAGCCTCCATCAAGACATTGGCAATTTTCATAACTACAATGATGGTTTGCTCATTTCTAGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

mRNA sequence

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

Coding sequence (CDS)

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

Protein sequence

MAASTKTLTIFITMMMVCSFMVNSTNANSISYGAIGGDGKPICKDGNCEGDAANGYNRGCESEDRCRTDNIVNPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG

Homology

[Close]

BLAST of ClCG01G021540 vs. TrEMBL
Match: A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRT 69
          Y RGCE E+ CR+
Sbjct: 61 YTRGCEPEEHCRS 71

[Close]

BLAST of ClCG01G021540 vs. TrEMBL
Match: A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-03
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1


Query: 73  NPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG 112
           NP +AT + YGAI + G  +C DG C+ LGDPAN Y RG
Sbjct: 25  NPTNATSLDYGAIGK-GDARCKDGKCEILGDPANNYTRG 62

HSP 2 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1  MAAST-KTLTIF-ITMMMVCSFMVNSTNANSISYGAIGGDGKPICKDGNCE--GDAANGY 60
          MA +T KTL I  I M+M CS + N TNA S+ YG IG  G   CKDG CE  GD AN Y
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIG-KGDARCKDGKCEILGDPANNY 60

Query: 61 NRGCESEDRCRTDNIVNP 75
           RGCE E+ CR+ +  +P
Sbjct: 61 TRGCEPEEHCRSGSSGSP 77

[Close]

BLAST of ClCG01G021540 vs. TrEMBL
Match: A0A0A0KJT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-03
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1


Query: 71  IVNPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG 112
           I NP +AT + YG I + G  +C DG C+ LGDPAN Y RG
Sbjct: 23  IENPTNATSLGYGVIGK-GDARCKDGKCEILGDPANNYTRG 62

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: gi|700194487|gb|KGN49664.1| (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRT 69
          Y RGCE E+ CR+
Sbjct: 61 YTRGCEPEEHCRS 71

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: gi|700194487|gb|KGN49664.1| (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-03
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1


Query: 73  NPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG 112
           NP +AT + YGAI + G  +C DG C+ LGDPAN Y RG
Sbjct: 25  NPTNATSLDYGAIGK-GDARCKDGKCEILGDPANNYTRG 62

HSP 2 Score: 72.8 bits (177), Expect = 4.3e-10
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1  MAAST-KTLTIF-ITMMMVCSFMVNSTNANSISYGAIGGDGKPICKDGNCE--GDAANGY 60
          MA +T KTL I  I M+M CS + N TNA S+ YG IG  G   CKDG CE  GD AN Y
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIG-KGDARCKDGKCEILGDPANNY 60

Query: 61 NRGCESEDRCRTDNIVNP 75
           RGCE E+ CR+ +  +P
Sbjct: 61 TRGCEPEEHCRSGSSGSP 77

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: gi|700193860|gb|KGN49064.1| (hypothetical protein Csa_6G511800 [Cucumis sativus])

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-03
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1


Query: 71  IVNPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG 112
           I NP +AT + YG I + G  +C DG C+ LGDPAN Y RG
Sbjct: 23  IENPTNATSLGYGVIGK-GDARCKDGKCEILGDPANNYTRG 62

HSP 2 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 1  MAASTKTLTIFITMMMVCSFMVNS--TNANSISYGAIGGDGKPICKDGNCEGDAANGYNR 60
          MA S K L I I  +++CSF V+    NA  ISYGA+ G+G P CK  NC    +N YNR
Sbjct: 1  MAMSNKALAICIIAIVICSFAVDDVLVNAVPISYGAMRGNGIP-CKGPNCLPPPSNTYNR 60

Query: 61 GCESEDRCR 68
          GCE  + CR
Sbjct: 61 GCEKSNECR 68

The following BLAST results are available for this feature:

BLAST of ClCG01G021540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD0_CUCSA	2.7e-11	58.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1	[more]
A0A0A0KLD0_CUCSA	1.2e-03	56.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1	[more]
A0A0A0KJT5_CUCSA	2.1e-03	53.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1	[more]

BLAST of ClCG01G021540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194487\|gb\|KGN49664.1\|	3.9e-11	58.90	hypothetical protein Csa_5G054060 [Cucumis sativus]	[more]
gi\|700194487\|gb\|KGN49664.1\|	1.7e-03	56.41	hypothetical protein Csa_5G054060 [Cucumis sativus]	[more]
gi\|700193860\|gb\|KGN49064.1\|	3.0e-03	53.66	hypothetical protein Csa_6G511800 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G021540.1	ClCG01G021540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 27..67 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G021540	Csa6G511800	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G021540	Cla97C01G021110	Watermelon (97103) v2	wcgwmbB089
ClCG01G021540	CSPI06G33110	Wild cucumber (PI 183967)	cpiwcgB453

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G021540	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G021540	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G021540	Cucurbita pepo (Zucchini)	cpewcgB460
ClCG01G021540	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G021540	Bottle gourd (USVL1VR-Ls)	lsiwcgB175
ClCG01G021540	Cucumber (Gy14) v2	cgybwcgB018
ClCG01G021540	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G021540	Melon (DHL92) v3.6.1	medwcgB510
ClCG01G021540	Silver-seed gourd	carwcgB0397
ClCG01G021540	Silver-seed gourd	carwcgB0623
ClCG01G021540	Cucumber (Chinese Long) v3	cucwcgB029
ClCG01G021540	Cucumber (Chinese Long) v3	cucwcgB455
ClCG01G021540	Watermelon (97103) v2	wcgwmbB091
ClCG01G021540	Wax gourd	wcgwgoB227
ClCG01G021540	Cucumber (Gy14) v1	cgywcgB022
ClCG01G021540	Cucurbita maxima (Rimu)	cmawcgB349
ClCG01G021540	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G021540	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G021540	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G021540	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G021540	Wild cucumber (PI 183967)	cpiwcgB022
ClCG01G021540	Cucumber (Chinese Long) v2	cuwcgB019
ClCG01G021540	Melon (DHL92) v3.5.1	mewcgB136
ClCG01G021540	Melon (DHL92) v3.5.1	mewcgB515
ClCG01G021540	Watermelon (97103) v1	wcgwmB141