ClCG01G021170 (gene) Watermelon (Charleston Gray)

NameClCG01G021170
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUPF0329 protein ECU05_1680/ECU11_0050
LocationCG_Chr01 : 35110758 .. 35111307 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATCAAATCGGGATATCAGTCGATCAACATAGCCATTGCAAATGCAGTTTCTGGGTACAATTTCAACTAGTCTAAACTGAATTAAAATTACTAAACGAACTCCATAAACATGATCGACAACTAATAAGAACTTATAAGAGCCAAAAGAAACCCGGATCTTTCTCACTGAAACACGGTTTCAGTGAAACCCCATCACAGATCCAAAGCCAGGTCGCGACCCAGATGCGAGAAACATAACCAGAAGATAAGGCGATGCAGACCCTTGAAGAACAAAGGCAAGAAAACCAAAAAGCAAAGCGAGAGTAGCCGAAAAGTATACCCAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTCAAGAACTGGAGCTGAGCAGCTTTGCTTTTGTTGGCAGAGTAAAAGGAGTGCTGTAGAAAGATGTCTTGAAATAGCTCAGCCCTGAGAGAAGAAGGAAAGGAAGGGAGGGAGAAGAGAGTAATAAAAATGGATTTAGCTCTGGTTCTGGTGGATTAGAAGAGAAGGAGGAGAGGTAG

mRNA sequence

ATGACCATCAAATCGGGATATCAGTCGATCAACATAGCCATTGCAAATGCAGTTTCTGGATGCGAGAAACATAACCAGAAGATAAGGCGATGCAGACCCTTGAAGAACAAAGGCAAGAAAACCAAAAAGCAAAGCGAGAGTAGCCGAAAAGTATACCCAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTCAAGAACTGGAGCTGAGCAGCTTTGCTTTTGTTGGCAGAGTAAAAGGAGTGCTAGAAGAAGGAAAGGAAGGGAGGGAGAAGAGAGTAATAAAAATGGATTTAGCTCTGGTTCTGGTGGATTAGAAGAGAAGGAGGAGAGGTAG

Coding sequence (CDS)

ATGACCATCAAATCGGGATATCAGTCGATCAACATAGCCATTGCAAATGCAGTTTCTGGATGCGAGAAACATAACCAGAAGATAAGGCGATGCAGACCCTTGAAGAACAAAGGCAAGAAAACCAAAAAGCAAAGCGAGAGTAGCCGAAAAGTATACCCAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTCAAGAACTGGAGCTGAGCAGCTTTGCTTTTGTTGGCAGAGTAAAAGGAGTGCTAGAAGAAGGAAAGGAAGGGAGGGAGAAGAGAGTAATAAAAATGGATTTAGCTCTGGTTCTGGTGGATTAGAAGAGAAGGAGGAGAGGTAG

Protein sequence

MTIKSGYQSINIAIANAVSGCEKHNQKIRRCRPLKNKGKKTKKQSESSRKVYPKKKKKKKKKKKKKKISRTGAEQLCFCWQSKRSARRRKGREGEESNKNGFSSGSGGLEEKEER
BLAST of ClCG01G021170 vs. TrEMBL
Match: G4UU03_NEUT9 (Uncharacterized protein OS=Neurospora tetrasperma (strain FGSC 2509 / P0656) GN=NEUTE2DRAFT_140245 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-06
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1

Query: 4   KSGYQSINIA-----IANAVSGCEKHNQKIRRCRPLKNKGKKTKKQSESSRKVYPKKKKK 63
           K GY  I I      +  ++   EKH +K ++ +  K K KK KK+ +  +K   KKKKK
Sbjct: 255 KEGYGGIYITATVLQVNQSIKRNEKHKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 314

Query: 64  KKKKKKKKKISRTGAEQLCFCWQSKRSARRRKGREGEESNKNGFSS 105
           KKKKKKKKK  +   ++       K+  +++K ++ ++  +N ++S
Sbjct: 315 KKKKKKKKKKKKKKKKK-------KKKKKKKKKKKKKKRGQNAYTS 353

BLAST of ClCG01G021170 vs. NCBI nr
Match: gi|432102587|gb|ELK30154.1| (UPF0510 protein INM02 [Myotis davidii])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1

Query: 22  EKHNQKIRRCRPLKNKGKKTKKQSESSRKVYPKKKKKKKKKKKKKKISRTGAEQLCFCWQ 81
           +K  +K ++ +  K K KK KK+ +  +K   KKKKKKKKKKKKKK  +   ++     +
Sbjct: 311 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 370

Query: 82  SKRSARRRKGREGEESNKNGFSSGSGG 109
            K+  +++K +E EE  + G   G GG
Sbjct: 371 KKKKKKKKKKKEEEEPERRGEGGGEGG 397

BLAST of ClCG01G021170 vs. NCBI nr
Match: gi|432102587|gb|ELK30154.1| (UPF0510 protein INM02 [Myotis davidii])

HSP 1 Score: 41.2 bits (95), Expect = 1.4e+00
Identity = 20/65 (30.77%), Postives = 39/65 (60.00%), Query Frame = 1

Query: 35  KNKGKKTKKQSESSRKVYPKKKKKKKKKKKKKKISRTGAEQLCFCWQSKRSARRRKGREG 94
           + +G++ K++ E   +   KKKKKKKKKKKKKK  +   ++     + K+  +++K ++ 
Sbjct: 255 EEEGEEEKEEKEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 314

Query: 95  EESNK 100
           ++  K
Sbjct: 315 KKKKK 319


HSP 2 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 1

Query: 4   KSGYQSINIAIANAVSGCEKHNQKIRRCRPLKNKGKKTKKQSESSRKVYPKKKKKKKKKK 63
           KSG    N+++   +SG     QK RR R  + K +K KK+ +  +K   KKKKKKKKKK
Sbjct: 8   KSGVSIFNLSLKRTISGVTTPPQKQRRKRRRRRKRRKKKKKKKKKKKKKKKKKKKKKKKK 67

Query: 64  KKKKISRTGAEQLCFCW----------QSKRSARRRKGREGEESNKNGF 103
           KKKK +      L   W          Q++   +RR  +E  ++ K G+
Sbjct: 68  KKKKKTHPSLSFL-LVWMIGTPSSTPLQNQHERKRRLEKEQCKTKKGGY 115

BLAST of ClCG01G021170 vs. NCBI nr
Match: gi|918306995|gb|KOF78889.1| (hypothetical protein OCBIM_22030170mg [Octopus bimaculoides])

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-06
Identity = 36/93 (38.71%), Postives = 45/93 (48.39%), Query Frame = 1

Query: 22  EKHNQKIRRCRPLKNKGKKTKKQSESSRKVYPKKKKKKKKKKKKKKISRTGAEQLCFCWQ 81
           EK  +   R R  K K KK KK+ +  +K   KKKKKK+KKKKKKK+   G         
Sbjct: 19  EKGERSKGRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKKKMEEEGG-------- 78

Query: 82  SKRSARRRKGREGEESNKNGFSSGSGGLEEKEE 115
                   + +E EE  + G   G G  EEKEE
Sbjct: 79  GGEEEEEEEEKEEEEEEEGGGGGGGGEKEEKEE 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
G4UU03_NEUT97.9e-0632.08Uncharacterized protein OS=Neurospora tetrasperma (strain FGSC 2509 / P0656) GN=... [more]
Match NameE-valueIdentityDescription
gi|432102587|gb|ELK30154.1|2.3e-0636.78UPF0510 protein INM02 [Myotis davidii][more]
gi|432102587|gb|ELK30154.1|1.4e+0030.77UPF0510 protein INM02 [Myotis davidii][more]
gi|918306995|gb|KOF78889.1|8.7e-0638.71hypothetical protein OCBIM_22030170mg [Octopus bimaculoides][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G021170.1ClCG01G021170.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score:

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None