ClCG01G021110 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G021110
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-directed RNA polymerase II subunit rpb4
Location	CG_Chr01 : 35066771 .. 35075680 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGCAAACTAGTGAGATACTAAATGCTCCTTCTCGATTGCAATCTCACAAAGTGTTCACATAAGTTTGGAATCACATTGACATTTGACATTTTGAACGAGGACTCCACTAAGACATTAAATTTATTCTTATCATTAAATTCTTACAAAAATTTTGTTTCAATATTTGTAAACAATATATGTAATTTTTTATTTTTGTTTGAGTTCAACAATATGCTACCGAGATGTAGTGGAAGATTCAAAGCTCTAAAAAAAGTGTATAATTTAGGTCGGTTTGGTAACCATTTAATTTTTTATTTTGGGTTTTGAAGACTAAACATATTTTTTCTTATAATATTTGTATCTTTCTTATAAGTTGAATTTTTAGCCAAATTTCAAAAACAAAAATAAATTAAATTTATTTTTGTTTTTGAAATTTGGCTTAGTTTTTTAAGCAATCAGTAAACACTAGACAATAAAAGAAAAAATTTAGTGGCGAAAAAACAAAAACAAAAACAAAATAGTTATCAAAAAAAAAAAAAGCTTTTATATGTTAATTTTTGTCAATTTTTTTTTACCAATTTTTAAATATAACAAAACTAGCCAATTTATTTAATTGGGCTTTTTGCTTGAAAGTTGAATCCTTCAGAATTGGAGGTTGGAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTCCTTTTTCTCCTTCCACTCCGCCATTGCATTCTTCTCGATTCTTTTTCCCGTACTTCCCTATTTGGTTCCAGGAAAGATAATGTTTCAGTTTCCAATTTGTAAGCTGAGAAAAGCATGTCATGATTGCCTTAGTTTTGATTTTCTGAAGTAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCACTCTCAAGGATGGTTCGTATCGTTAATGTCTTTTGACGCTATCGGGAATGGGGTGGTTGAGTATCGTTTGCAATTATCTACTCGTGCGTATTTCAACTTCATGCATCTTTTGCCCCCATTGAACTGAATTCACTCTTGTCCAAATTATTTCTCAATCTTCAACCAAGTTTTTGTTTTGAGAATCTCTTGGATTTTAAAGCTCCCATGACTACTGTTTGTACATGACTGAAAAATTGTGAACCCTTGTTGCTTCCAGCTTCCATGGTTTATGCTTGTAGTTTGCTAAATGGATCATGGGTCACAGGAATACATCATTAACTATAATTAGTGATATTTTCTCTGGAACTGGGCATTTAAACGAGGTGGATCAGGATTAGAATAATTAAGCATGATTGGAAATTCTTTTAGGCATCACGGTTTCTTCTCTTCTACACTTTTTTTTTGTTTGCCCAATGTATATCAAATGCTTCCTGACTTGTTGCATAGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCCAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGTCAATAGTCTTTCTTATCATCCTAACAGCGATACTTTTTGTGTTATAAAAATCACTTGATGTGCCAATGTTAAATCAATTATCTGTCTAAATTGGTGTGCTTATTATATAAAACTACTTACTTCGGAAGTAATTGTACATACAGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTACCAGTTTTAAATGTTCATATTATTTCTATTCTACTCTTATCTTTCTGCTGTCTAACTTCAGCAGCCTGTTCTTTGTATTCTTCTGTTAATGCATATATTCTCCTTTTCAATCGTGGCTTGTAGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGGTGGGTACTTCCTTGAATTCGAATATTGTTATATTCGGTATTGCATAGTCTTGAATGTATCAGTTTTTGCTATTACTCATGGCATGGAAGATCGGTGTTGCCTTACTTTTTATGGCAACTGGCTGTTTTCTCTTTTCTGTTCTGAGGCTGTATTTTTTAGATATGTTTTCATATAATAGCAAAATAAGTCAACTTATTTACAGATATAGTCTATCAATGTCTATCACCGATAGAAAGTGATAGATGATAGTTAGTAATAGTAGTCTATCACTGTCTATTAGTTTGAAAAAACTTTTTGTTTTTGTTTTTTGCTTTTTTACTATATTTGAAAATATTTCCAACATTTTTGCCATTTAAAACAATCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

ATGAGAAGCAAACTATTGAATCCTTCAGAATTGGAGGTTGGAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCACTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCCAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCATGATCAGATGGTTCTTCTATCTGCAGATCCAACCATAAAAATTCCTACGTCATTTGATAGGGGATTGCAATACGCTAAAAGAGCCAACCACTATGTAAATAGCGAGTCAGTTAGACCAGTTCTCGAAACCCTCAAGAAACATGGCGTAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCAACCTTGAAGAAGTAG

Coding sequence (CDS)

ATGAGAAGCAAACTATTGAATCCTTCAGAATTGGAGGTTGGAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCACTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCCAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCATGATCAGATGGTTCTTCTATCTGCAGATCCAACCATAAAAATTCCTACGTCATTTGATAGGGGATTGCAATACGCTAAAAGAGCCAACCACTATGTAAATAGCGAGTCAGTTAGACCAGTTCTCGAAACCCTCAAGAAACATGGCGTAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCAACCTTGAAGAAGTAG

Protein sequence

MRSKLLNPSELEVGTRLVSRPIAQDERKDSPIFRSTNRFCLELNRTETGEQFSAMSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNLSMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKK

Homology

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BLAST of ClCG01G021110 vs. Swiss-Prot
Match: NRPD4_ARATH (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-32
Identity = 90/199 (45.23%), Postives = 110/199 (55.28%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQN-- 114
           MSEKG KG        KSSLKS   KD    GKD S +K KKGRK+ FD +         
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 115 NLSMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQ 174
           N+S           K GK      S        ELK   +LP+N   +C+MDCEA Q+L 
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK---DLPENA--ECMMDCEAFQILD 120

Query: 175 GIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVI 234
           GI  Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK +G++D E+CVI
Sbjct: 121 GIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVI 180

Query: 235 ANVCPDTTDEVFALLPTLK 252
           AN   ++ DEV A +P+LK
Sbjct: 181 ANASSESVDEVLAFIPSLK 181

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BLAST of ClCG01G021110 vs. Swiss-Prot
Match: NRPB4_ARATH (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-18
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 140 KEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQY 199
           +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 200 AKRANHYVNSESVRPVLETLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 252
            KR + Y N ++VR V E L +H +T+ E+CV+ N+CP+T +E  A++P+LK
Sbjct: 65  VKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

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BLAST of ClCG01G021110 vs. Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.5e-06
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 192 SFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 251
           +F + L YA++ + Y N  S++ V   L K  + + EI  +AN+CP+ +DE  +L+P+LK
Sbjct: 75  TFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK 134

Query: 252 K 253
           K
Sbjct: 135 K 135

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BLAST of ClCG01G021110 vs. TrEMBL
Match: A0A0A0KH45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.7e-96
Identity = 179/198 (90.40%), Postives = 187/198 (94.44%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           MSEKG+KGF VQK+PAKSSLKSS LKDASLKGKDDSLSK KKGRKVQFDAQGSVDA N  
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 115 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 174
           SMKYSGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 175 HDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIAN 234
            DQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+GVTDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 235 VCPDTTDEVFALLPTLKK 253
           VCPDTTDEVFALLP+LK+
Sbjct: 181 VCPDTTDEVFALLPSLKR 198

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BLAST of ClCG01G021110 vs. TrEMBL
Match: M5WHF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010773mg PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 136/205 (66.34%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 55  MSEKGDKGFPVQK-KPAKSSLKSS-TLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQN 114
           MSEKG KGF +   K  KSSLKS+ + KDASLKGKDDS +K KKGRKVQFD++G  + ++
Sbjct: 1   MSEKGGKGFSLPTGKAVKSSLKSTPSTKDASLKGKDDSSTKSKKGRKVQFDSEGLHEPKS 60

Query: 115 NLSMKY------SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCE 174
           N S K+      SGK  D GKGGKG  V     KEPQPLELKIEQELP++ KC  LMDCE
Sbjct: 61  NFSSKFDNPAAASGK--DWGKGGKGDKVGNGRKKEPQPLELKIEQELPQSAKC--LMDCE 120

Query: 175 AAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTD 234
           AA +LQGI +QM+LLS DPTIKIP SFD+GLQYAKR +HY N +SVR VLETL K+GV+D
Sbjct: 121 AADILQGIQEQMILLSKDPTIKIPVSFDKGLQYAKRTSHYTNPQSVRKVLETLTKYGVSD 180

Query: 235 SEICVIANVCPDTTDEVFALLPTLK 252
            EI VIANVCP+TTDEVFAL+P+LK
Sbjct: 181 GEISVIANVCPETTDEVFALVPSLK 201

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BLAST of ClCG01G021110 vs. TrEMBL
Match: M5X246_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010773mg PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 135/217 (62.21%), Postives = 159/217 (73.27%), Query Frame = 1


Query: 55  MSEKGDKGFPVQK-KPAKSSLKSS-TLKD------------ASLKGKDDSLSKPKKGRKV 114
           MSEKG KGF +   K  KSSLKS+ + KD            +SLKGKDDS +K KKGRKV
Sbjct: 1   MSEKGGKGFSLPTGKAVKSSLKSTPSTKDGLLFLRSLLFLTSSLKGKDDSSTKSKKGRKV 60

Query: 115 QFDAQGSVDAQNNLSMKY------SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELP 174
           QFD++G  + ++N S K+      SGK  D GKGGKG  V     KEPQPLELKIEQELP
Sbjct: 61  QFDSEGLHEPKSNFSSKFDNPAAASGK--DWGKGGKGDKVGNGRKKEPQPLELKIEQELP 120

Query: 175 KNVKCQCLMDCEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRP 234
           ++ KC  LMDCEAA +LQGI +QM+LLS DPTIKIP SFD+GLQYAKR +HY N +SVR 
Sbjct: 121 QSAKC--LMDCEAADILQGIQEQMILLSKDPTIKIPVSFDKGLQYAKRTSHYTNPQSVRK 180

Query: 235 VLETLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 252
           VLETL K+GV+D EI VIANVCP+TTDEVFAL+P+LK
Sbjct: 181 VLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLK 213

[Close]

BLAST of ClCG01G021110 vs. TrEMBL
Match: A0A059CDW6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00945 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.1e-55
Identity = 124/208 (59.62%), Postives = 145/208 (69.71%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           M+EKG KG  +  K AKSSLKS+T   AS KGKDD   KPKKGRKVQFD++G  D     
Sbjct: 1   MAEKGGKGHSLPGKAAKSSLKSTTPNGASAKGKDDGSGKPKKGRKVQFDSEGLGDGIFGF 60

Query: 115 SMKYSGKNGD-------LGKGGKG----VSVKASVAKEPQPLELKIEQELPKNVKCQCLM 174
           S   SG   D       LGKGGKG     + K+S  KE  PLEL++EQELPK+ KC  LM
Sbjct: 61  S---SGSKADSLLNKLNLGKGGKGDKTGSAAKSSAPKELPPLELRVEQELPKHAKC--LM 120

Query: 175 DCEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHG 234
           DCEAA++LQGI +QMV+LS DPTIKIP SF RGLQYAK   HY +  SVR  LE L ++G
Sbjct: 121 DCEAAEILQGIQEQMVVLSEDPTIKIPVSFTRGLQYAKNGIHYTDPGSVRRALEPLTQYG 180

Query: 235 VTDSEICVIANVCPDTTDEVFALLPTLK 252
           VT+ EICVI NVCP+T DEVFAL+P+LK
Sbjct: 181 VTEGEICVIGNVCPETPDEVFALVPSLK 203

[Close]

BLAST of ClCG01G021110 vs. TrEMBL
Match: D7T5E7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00020 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.9e-53
Identity = 120/207 (57.97%), Postives = 147/207 (71.01%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           M EKG KGF +     KSS KS    +ASL GKDDS +K K+GRKVQF+  G  +A+   
Sbjct: 1   MGEKGGKGFSLNSNLGKSSTKSPL--EASLTGKDDSAAKSKRGRKVQFNNGGLPEARLTS 60

Query: 115 SMKYSGKN------GDLGKGGKGVSV----KASVAKEPQPLELKIEQELPKNVKCQCLMD 174
           S+   GK       GDL KGGKG  V    K++V K P PLEL+IEQELPKN KC  +MD
Sbjct: 61  SLMSGGKTDIPIAKGDLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKC--MMD 120

Query: 175 CEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGV 234
           CEAA +L+GI +QMV+LS DPTIKIP SF++GLQYA+ +N Y + +SVR VLE L K+GV
Sbjct: 121 CEAALILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLEPLSKYGV 180

Query: 235 TDSEICVIANVCPDTTDEVFALLPTLK 252
           +D EICVIAN CP+T DEVFAL+P+LK
Sbjct: 181 SDGEICVIANTCPETIDEVFALVPSLK 203

[Close]

BLAST of ClCG01G021110 vs. TAIR10
Match: AT4G15950.1 (AT4G15950.1 RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 90/199 (45.23%), Postives = 110/199 (55.28%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQN-- 114
           MSEKG KG        KSSLKS   KD    GKD S +K KKGRK+ FD +         
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 115 NLSMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQ 174
           N+S           K GK      S        ELK   +LP+N   +C+MDCEA Q+L 
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK---DLPENA--ECMMDCEAFQILD 120

Query: 175 GIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVI 234
           GI  Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK +G++D E+CVI
Sbjct: 121 GIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVI 180

Query: 235 ANVCPDTTDEVFALLPTLK 252
           AN   ++ DEV A +P+LK
Sbjct: 181 ANASSESVDEVLAFIPSLK 181

[Close]

BLAST of ClCG01G021110 vs. TAIR10
Match: AT5G09920.1 (AT5G09920.1 RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 140 KEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQY 199
           +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 200 AKRANHYVNSESVRPVLETLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 252
            KR + Y N ++VR V E L +H +T+ E+CV+ N+CP+T +E  A++P+LK
Sbjct: 65  VKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

[Close]

BLAST of ClCG01G021110 vs. NCBI nr
Match: gi|778720042|ref|XP_011658100.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 179/198 (90.40%), Postives = 187/198 (94.44%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           MSEKG+KGF VQK+PAKSSLKSS LKDASLKGKDDSLSK KKGRKVQFDAQGSVDA N  
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 115 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 174
           SMKYSGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 175 HDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIAN 234
            DQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+GVTDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 235 VCPDTTDEVFALLPTLKK 253
           VCPDTTDEVFALLP+LK+
Sbjct: 181 VCPDTTDEVFALLPSLKR 198

[Close]

BLAST of ClCG01G021110 vs. NCBI nr
Match: gi|659080742|ref|XP_008440955.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 179/197 (90.86%), Postives = 187/197 (94.92%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           MSEKG+KGF VQKKPAKSSLKSS LKDASLKGKDDSLSK KKGRKVQFDAQGSVDA N+ 
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 115 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 174
           SMKYSGKNGD+GKGGKG + KASVAKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 175 HDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIAN 234
            DQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+G+TDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 235 VCPDTTDEVFALLPTLK 252
           VCPDTTDEVFALLP+LK
Sbjct: 181 VCPDTTDEVFALLPSLK 197

[Close]

BLAST of ClCG01G021110 vs. NCBI nr
Match: gi|778720056|ref|XP_011658103.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 3.5e-92
Identity = 175/198 (88.38%), Postives = 183/198 (92.42%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           MSEKG+KGF VQK+PAKSSLKSS LKD    GKDDSLSK KKGRKVQFDAQGSVDA N  
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 115 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 174
           SMKYSGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 175 HDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIAN 234
            DQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+GVTDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 235 VCPDTTDEVFALLPTLKK 253
           VCPDTTDEVFALLP+LK+
Sbjct: 181 VCPDTTDEVFALLPSLKR 194

[Close]

BLAST of ClCG01G021110 vs. NCBI nr
Match: gi|659080750|ref|XP_008440960.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 3.5e-92
Identity = 175/197 (88.83%), Postives = 183/197 (92.89%), Query Frame = 1


Query: 55  MSEKGDKGFPVQKKPAKSSLKSSTLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQNNL 114
           MSEKG+KGF VQKKPAKSSLKSS LKD    GKDDSLSK KKGRKVQFDAQGSVDA N+ 
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 115 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 174
           SMKYSGKNGD+GKGGKG + KASVAKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 175 HDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTDSEICVIAN 234
            DQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+G+TDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 235 VCPDTTDEVFALLPTLK 252
           VCPDTTDEVFALLP+LK
Sbjct: 181 VCPDTTDEVFALLPSLK 193

[Close]

BLAST of ClCG01G021110 vs. NCBI nr
Match: gi|645236256|ref|XP_008224649.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Prunus mume])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 136/205 (66.34%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 55  MSEKGDKGFPVQK-KPAKSSLKSS-TLKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQN 114
           MSEKG KGF +   K  KSSLKS+ + KDASLKGKDDS +K KKGRKVQFD++G  + ++
Sbjct: 1   MSEKGGKGFSLPTGKAVKSSLKSTPSTKDASLKGKDDSSTKSKKGRKVQFDSEGLHEPKS 60

Query: 115 NLSMKY------SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCE 174
           N S K+      SGK  D GKGGKG  V     KEPQPLELKIEQELP++ KC  LMDCE
Sbjct: 61  NFSSKFDNPAAASGK-ADWGKGGKGDKVGNGRKKEPQPLELKIEQELPQSAKC--LMDCE 120

Query: 175 AAQLLQGIHDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGVTD 234
           AA +LQGI +QM+LLS DPTIKIP SFD+GLQYAKR +HY N +SVR VLETL K+GV+D
Sbjct: 121 AADILQGIQEQMILLSKDPTIKIPVSFDKGLQYAKRTSHYTNPQSVRKVLETLTKYGVSD 180

Query: 235 SEICVIANVCPDTTDEVFALLPTLK 252
            EI VIANVCP+TTDEVFAL+P+LK
Sbjct: 181 GEISVIANVCPETTDEVFALVPSLK 202

The following BLAST results are available for this feature:

BLAST of ClCG01G021110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPD4_ARATH	2.4e-32	45.23	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana GN=NRPD4...	[more]
NRPB4_ARATH	2.6e-18	39.29	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 S...	[more]
RPB4_DICDI	6.5e-06	37.70	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2...	[more]

BLAST of ClCG01G021110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH45_CUCSA	4.7e-96	90.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510870 PE=4 SV=1	[more]
M5WHF1_PRUPE	1.2e-62	66.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010773mg PE=4 SV=1	[more]
M5X246_PRUPE	1.2e-59	62.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010773mg PE=4 SV=1	[more]
A0A059CDW6_EUCGR	4.1e-55	59.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00945 PE=4 SV=1	[more]
D7T5E7_VITVI	2.9e-53	57.97	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00020 PE=4 SV=...	[more]

BLAST of ClCG01G021110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15950.1	1.3e-33	45.23	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	1.4e-19	39.29	RNA polymerase II, Rpb4, core protein	[more]

BLAST of ClCG01G021110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778720042\|ref\|XP_011658100.1\|	6.8e-96	90.40	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis s...	[more]
gi\|659080742\|ref\|XP_008440955.1\|	6.8e-96	90.86	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis m...	[more]
gi\|778720056\|ref\|XP_011658103.1\|	3.5e-92	88.38	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis s...	[more]
gi\|659080750\|ref\|XP_008440960.1\|	3.5e-92	88.83	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis m...	[more]
gi\|645236256\|ref\|XP_008224649.1\|	1.3e-62	66.34	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005574	RPB4/RPC9
IPR006590	RNA_pol_Rpb4/RPC9_core
IPR010997	HRDC-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0044237	cellular metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0000166	nucleotide binding
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000418	DNA-directed RNA polymerase IV complex
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G021110.1	ClCG01G021110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005574	RNA polymerase II, Rpb4	PFAM	PF03874	RNA_pol_Rpb4	coord: 186..251 score: 8.
IPR006590	RNA polymerase II, Rpb4, core	SMART	SM00657	rpol4neu2	coord: 154..252 score: 0.
IPR010997	HRDC-like	unknown	SSF47819	HRDC-like	coord: 140..251 score: 8.72
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 120..251 score: 2.2
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 120..251 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G021110	Csa6G510870	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G021110	MELO3C007997	Melon (DHL92) v3.5.1	mewcgB514
ClCG01G021110	Cla97C01G020690	Watermelon (97103) v2	wcgwmbB089
ClCG01G021110	Bhi03G000534	Wax gourd	wcgwgoB227
ClCG01G021110	CSPI06G32680	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G021110	Cucsa.044470	Cucumber (Gy14) v1	cgywcgB022
ClCG01G021110	CmaCh03G006040	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G021110	CmaCh07G003670	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G021110	CmoCh07G003620	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G021110	CmoCh03G006310	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G021110	Lsi01G005100	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G021110	Cp4.1LG19g08250	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G021110	CsGy6G032300	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G021110	MELO3C007997.2	Melon (DHL92) v3.6.1	medwcgB509
ClCG01G021110	Carg07898	Silver-seed gourd	carwcgB0623
ClCG01G021110	Carg00523	Silver-seed gourd	carwcgB0397
ClCG01G021110	CsaV3_6G048110	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G021110	Watermelon (Charleston Gray)	wcgwcgB085
ClCG01G021110	Cucurbita maxima (Rimu)	cmawcgB349
ClCG01G021110	Wild cucumber (PI 183967)	cpiwcgB030
ClCG01G021110	Cucumber (Chinese Long) v2	cuwcgB019
ClCG01G021110	Melon (DHL92) v3.5.1	mewcgB136
ClCG01G021110	Watermelon (97103) v1	wcgwmB141
ClCG01G021110	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G021110	Cucurbita pepo (Zucchini)	cpewcgB460
ClCG01G021110	Bottle gourd (USVL1VR-Ls)	lsiwcgB178
ClCG01G021110	Cucumber (Gy14) v2	cgybwcgB026
ClCG01G021110	Cucumber (Chinese Long) v3	cucwcgB029
ClCG01G021110	Watermelon (97103) v2	wcgwmbB092