ClCG01G015490 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G015490
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Chromatin assembly factor 1 subunit B
Location	CG_Chr01 : 29710333 .. 29711796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCGAAGCCGGTGCTCACCCTAGATTTCCATCCACTTTCAGGTCTCCTCGCAACTGGCGGAGCCGATTTCGATATCAAGGTCTGCATTCAGTTTCCCTTTTCGCTTCTGATTTTGATCTTTGATGTAATTAGGCTACCCAATTTCAATTATTAGGTTTTTTCCAACTTAGGCCATCAAGGGATATGTTCTGAGTATTTAGATTTGAGTGGTTGGTTGGATGTATGGCAATTGGGCTAACTGTTACCTTCGATTCTACCAGCTTTGGTTATTAAATTCAGGGGATGAACTAAAAAAGGTCCCTGGTGCTACGTATCAAAGCAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTTTCACCTTCTGGTATGTAAAATGTTTCTTGGTCCCTTAACATTATGTTTAATAGTACATTTCGTGAAATGTTTGTAAAATATTAGCACTTTATTTGGTGGATTCAAATATTTTGCTTCAAGGTCAAGCTATAATTTCGTCAAAAATTCAGGATGTGCAATTTTGGTTACATCAGTGCTACAAAAAGTAATATCCCCTCTGTAAACCATCAGCTTAATATATGATTATTCTAAGTCTTTGAACATATATAACTGTTAGGAGCGCAAACATAGTCCCATATTTTGGTTGGGGAAGGAAGTGACCATGGGTATATAGGACAATTATCTTCATTGGTATGAGTCTTTTGGGTGGTTCCAAAAGCAAAATCACGTTTATGCTCAGAAGGTCAATATCATAGCATTGTGGAGATACGTGAAGAGTCGTTGTCCTTGACAATAACCATTTCGAATGCATTGGATGAATTTGGTTGATTAATGATTCCAGGATCTTGGTGCTTCAAAAGGGTATTTTCCCTTTTGTAAACCGTCAACCTAATACTTACTATACATCAGGTCTTTGAACATATGATCAATTTGAATGCTTTAGATGATTAAAGATTCCAAGACCAACTTTTCAAATAAGAATTTTGTTTCACAAAAGATGGTTTTTATATAGGACTCTATATGATTAGTGAGTTATTGATGGATATTAGGTCAAAAAGAGAGGGAGGGAATGAGTATTATCATAACTAATATTGCACTTTTGCAGAAGTCATTTTCAAAATTAAAATGCTTAACTTAAGTTTATTGATATTTCTCTTGTATTCTCTACAGTTTCTTATGTCCTCAATAGGGAATGGATTTTAATTTATTGACTTTCTTGGGAGAATTTATTGGTTGGAAGGGTTAGTAAGGGTATTTTGAAATCAATTAAAGATTATTAATTTAATTATTAATTTTTATTAATTTTTTTACGAGAAATCTAATTAGAGATGTTATGCCATTCTAGTTGTGCTTTTCAAGATGAGGTTGCCAGTAGTTTTGATATGGTTGAGGTTAGGCTTCTCTGTGGATTGCTCAAAGATGGCTAG

mRNA sequence

ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCGAAGCCGGTGCTCACCCTAGATTTCCATCCACTTTCAGGTCTCCTCGCAACTGGCGGAGCCGATTTCGATATCAAGCTTTGGTTATTAAATTCAGGGGATGAACTAAAAAAGGTCCCTGGTGCTACGTATCAAAGCAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTTTCACCTTCTGATGAGGTTGCCAGTAGTTTTGATATGGTTGAGGTTAGGCTTCTCTGTGGATTGCTCAAAGATGGCTAG

Coding sequence (CDS)

ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCGAAGCCGGTGCTCACCCTAGATTTCCATCCACTTTCAGGTCTCCTCGCAACTGGCGGAGCCGATTTCGATATCAAGCTTTGGTTATTAAATTCAGGGGATGAACTAAAAAAGGTCCCTGGTGCTACGTATCAAAGCAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTTTCACCTTCTGATGAGGTTGCCAGTAGTTTTGATATGGTTGAGGTTAGGCTTCTCTGTGGATTGCTCAAAGATGGCTAG

Protein sequence

MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSLSYHGSAVNSLRFSPSDEVASSFDMVEVRLLCGLLKDG

Homology

[Close]

BLAST of ClCG01G015490 vs. Swiss-Prot
Match: FAS2_ARATH (Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana GN=FAS2 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-30
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGT+QI+WHD KPVLT+DFHP+SGLLAT GAD+DIKLWL+NSG   KKVP  +YQSSL
Sbjct: 1  MKGGTIQISWHDGKPVLTVDFHPISGLLATAGADYDIKLWLINSGQAEKKVPSVSYQSSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          +YHG AVN++RFSPS E+ +S
Sbjct: 61 TYHGCAVNTIRFSPSGELLAS 81

[Close]

BLAST of ClCG01G015490 vs. Swiss-Prot
Match: FAS2_ORYSJ (Chromatin assembly factor 1 subunit FAS2 homolog OS=Oryza sativa subsp. japonica GN=FAS2 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-25
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          M+GGT+QINWH+ +PVLTLDFHP+S  LATGG+D DIK+W++ S D  KK+P ATY SSL
Sbjct: 1  MRGGTVQINWHEQQPVLTLDFHPVSRRLATGGSDHDIKIWVIASDDSDKKLPTATYHSSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          S H SAVN LRFSPS E  +S
Sbjct: 61 SSHSSAVNVLRFSPSGENLAS 81

[Close]

BLAST of ClCG01G015490 vs. Swiss-Prot
Match: CAF1B_HUMAN (Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-08
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDF-HPLSGL---LATGGADFDIKLWLLNSGDELKKVPGATY 60
          MK  T +I WH+ +PV +LDF H  +G    LA+ G D ++++W +  G + K +    +
Sbjct: 1  MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAI--VEF 60

Query: 61 QSSLSYHGSAVNSLRFSPSDEVASS 82
           S+L+ H  AVN +RFSP+ E+ +S
Sbjct: 61 LSNLARHTKAVNVVRFSPTGEILAS 83

HSP 2 Score: 29.3 bits (64), Expect = 3.0e+01
Identity = 14/39 (35.90%), Postives = 20/39 (51.28%), Query Frame = 1


Query: 13  SKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKV 52
           +K V  + F P   +LA+GG D  I LW +N   E +++
Sbjct: 66  TKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQI 104

[Close]

BLAST of ClCG01G015490 vs. Swiss-Prot
Match: CAF1B_CHICK (Chromatin assembly factor 1 subunit B OS=Gallus gallus GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDF-HPLSGL---LATGGADFDIKLWLLNSGDELKKVPGATY 60
          MK  T +I WH+ +PV +LDF H   G    LA+ G D  +++W +  G + K +    +
Sbjct: 1  MKVITCEIAWHNKEPVYSLDFQHGTDGKINRLASAGVDTAVRVWKVEKGPDGKAI--VEF 60

Query: 61 QSSLSYHGSAVNSLRFSPSDEVASS 82
           S+L+ H  AVN +RFSPS EV +S
Sbjct: 61 LSNLARHTKAVNVVRFSPSGEVLAS 83

HSP 2 Score: 30.8 bits (68), Expect = 1.0e+01
Identity = 16/37 (43.24%), Postives = 19/37 (51.35%), Query Frame = 1


Query: 13  SKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELK 50
           +K V  + F P   +LA+GG D  I LW LN   EL+
Sbjct: 66  TKAVNVVRFSPSGEVLASGGDDAVILLWKLNDSKELE 102

[Close]

BLAST of ClCG01G015490 vs. Swiss-Prot
Match: CAC2_YEAST (Chromatin assembly factor 1 subunit p60 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAC2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSG--LLATGGADFDIKLWLLNSGDE-----LKKVPG 60
          M+   LQI WHDS+PV +L F   S    L T G D  +++W LN  +      ++K+  
Sbjct: 1  MEASHLQIYWHDSQPVYSLTFQKNSANDKLFTAGGDNKVRIWKLNRDENGQNGGVRKIES 60

Query: 61 ATYQSSLSYHGSAVNSLRF-SPSDEVASSFDMVEVRL 90
            +  SL++H  A+N +RF S  D +AS+ D  +V L
Sbjct: 61 LDFLGSLTHHEQAINVIRFNSKGDVLASAGDDGQVLL 97

[Close]

BLAST of ClCG01G015490 vs. TrEMBL
Match: A0A0A0KFP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483440 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.4e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQI+WHDSKPVLTLDFHP+SGLLATGGADFDIKLWLLNSG+E KKVPGATYQ+SL
Sbjct: 1  MKGGTLQISWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQTSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSAVNSLRFSPS E  +S
Sbjct: 61 SYHGSAVNSLRFSPSGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. TrEMBL
Match: A0A166G9J6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001363 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          M+GGT+QINWHD+KPVLTLDFHP SGLLATGGADFDIKLWL+NSG+  KKVP ATY +SL
Sbjct: 1  MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSL 60

Query: 61 SYHGSAVNSLRFSPS-DEVASSFDMVEVRL 90
          SYHGSAVN LRFSPS +E+AS  D  E+ L
Sbjct: 61 SYHGSAVNVLRFSPSGEELASGADGGELIL 90

[Close]

BLAST of ClCG01G015490 vs. TrEMBL
Match: V4SD15_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000834mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.9e-30
Identity = 62/81 (76.54%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQINWHD+KPVLTLDFHP+SGLLATGGAD+DIK+WL+NSG++ KK+P A+YQ+SL
Sbjct: 1  MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSA+N LRFSP  E  +S
Sbjct: 61 SYHGSAINILRFSPCGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. TrEMBL
Match: A0A0B0NFM4_GOSAR (Chromatin assembly factor 1 subunit B OS=Gossypium arboreum GN=F383_15281 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-30
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGT+QINWHD+KPVLTLDFHP+SGLLATGGADFDIKLW++NSG   KK+P A+YQ+SL
Sbjct: 1  MKGGTVQINWHDTKPVLTLDFHPISGLLATGGADFDIKLWVINSGQVQKKIPTASYQNSL 60

Query: 61 SYHGSAVNSLRFSPSD 77
          SYHGSAVN+LRFSPS+
Sbjct: 61 SYHGSAVNALRFSPSE 76

[Close]

BLAST of ClCG01G015490 vs. TrEMBL
Match: A0A061DRA8_THECC (Transducin/WD40 repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_001439 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-30
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1   MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
           MKGGT+QINWHD+KPVLTLDFHP+SGLLATGGADFDIKLW +NS +  KK+P A+YQ+SL
Sbjct: 43  MKGGTVQINWHDTKPVLTLDFHPISGLLATGGADFDIKLWFINSDEVQKKIPTASYQNSL 102

Query: 61  SYHGSAVNSLRFSPSDEVASS 82
           SYHGSAVN+LRFSPS E  +S
Sbjct: 103 SYHGSAVNALRFSPSGEQLAS 123

[Close]

BLAST of ClCG01G015490 vs. TAIR10
Match: AT5G64630.2 (AT5G64630.2 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-31
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGT+QI+WHD KPVLT+DFHP+SGLLAT GAD+DIKLWL+NSG   KKVP  +YQSSL
Sbjct: 1  MKGGTIQISWHDGKPVLTVDFHPISGLLATAGADYDIKLWLINSGQAEKKVPSVSYQSSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          +YHG AVN++RFSPS E+ +S
Sbjct: 61 TYHGCAVNTIRFSPSGELLAS 81

[Close]

BLAST of ClCG01G015490 vs. NCBI nr
Match: gi|659080908|ref|XP_008441043.1| (PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X2 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQINWHDSKPVLTLDFHP+SGLLATGGADFDIKLWLLNSG+E KKVPGATYQSSL
Sbjct: 1  MKGGTLQINWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQSSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSAVN LRFSPS E  +S
Sbjct: 61 SYHGSAVNCLRFSPSGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. NCBI nr
Match: gi|659080906|ref|XP_008441042.1| (PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X1 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQINWHDSKPVLTLDFHP+SGLLATGGADFDIKLWLLNSG+E KKVPGATYQSSL
Sbjct: 1  MKGGTLQINWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQSSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSAVN LRFSPS E  +S
Sbjct: 61 SYHGSAVNCLRFSPSGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. NCBI nr
Match: gi|449461839|ref|XP_004148649.1| (PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X2 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQI+WHDSKPVLTLDFHP+SGLLATGGADFDIKLWLLNSG+E KKVPGATYQ+SL
Sbjct: 1  MKGGTLQISWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQTSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSAVNSLRFSPS E  +S
Sbjct: 61 SYHGSAVNSLRFSPSGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. NCBI nr
Match: gi|778717781|ref|XP_011657754.1| (PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X1 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          MKGGTLQI+WHDSKPVLTLDFHP+SGLLATGGADFDIKLWLLNSG+E KKVPGATYQ+SL
Sbjct: 1  MKGGTLQISWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQTSL 60

Query: 61 SYHGSAVNSLRFSPSDEVASS 82
          SYHGSAVNSLRFSPS E  +S
Sbjct: 61 SYHGSAVNSLRFSPSGEQLAS 81

[Close]

BLAST of ClCG01G015490 vs. NCBI nr
Match: gi|1021050929|gb|KZN08707.1| (hypothetical protein DCAR_001363 [Daucus carota subsp. sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-30
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 1  MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDELKKVPGATYQSSL 60
          M+GGT+QINWHD+KPVLTLDFHP SGLLATGGADFDIKLWL+NSG+  KKVP ATY +SL
Sbjct: 1  MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSL 60

Query: 61 SYHGSAVNSLRFSPS-DEVASSFDMVEVRL 90
          SYHGSAVN LRFSPS +E+AS  D  E+ L
Sbjct: 61 SYHGSAVNVLRFSPSGEELASGADGGELIL 90

The following BLAST results are available for this feature:

BLAST of ClCG01G015490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FAS2_ARATH	2.5e-30	72.84	Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana GN=FAS2 PE=1 SV...	[more]
FAS2_ORYSJ	9.2e-25	66.67	Chromatin assembly factor 1 subunit FAS2 homolog OS=Oryza sativa subsp. japonica...	[more]
CAF1B_HUMAN	7.8e-08	37.65	Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1	[more]
CAF1B_CHICK	1.0e-07	40.00	Chromatin assembly factor 1 subunit B OS=Gallus gallus GN=CHAF1B PE=1 SV=1	[more]
CAC2_YEAST	1.7e-07	36.08	Chromatin assembly factor 1 subunit p60 OS=Saccharomyces cerevisiae (strain ATCC...	[more]

BLAST of ClCG01G015490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP2_CUCSA	4.4e-34	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483440 PE=4 SV=1	[more]
A0A166G9J6_DAUCA	1.3e-30	76.67	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001363 PE=4 SV=1	[more]
V4SD15_9ROSI	3.9e-30	76.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000834mg PE=4 SV=1	[more]
A0A0B0NFM4_GOSAR	5.1e-30	81.58	Chromatin assembly factor 1 subunit B OS=Gossypium arboreum GN=F383_15281 PE=4 S...	[more]
A0A061DRA8_THECC	8.6e-30	77.78	Transducin/WD40 repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=...	[more]

BLAST of ClCG01G015490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64630.2	1.4e-31	72.84	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of ClCG01G015490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080908\|ref\|XP_008441043.1\|	2.8e-34	90.12	PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X2 [Cucumis melo]	[more]
gi\|659080906\|ref\|XP_008441042.1\|	2.8e-34	90.12	PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X1 [Cucumis melo]	[more]
gi\|449461839\|ref\|XP_004148649.1\|	6.3e-34	88.89	PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X2 [Cucumis sativus]	[more]
gi\|778717781\|ref\|XP_011657754.1\|	6.3e-34	88.89	PREDICTED: chromatin assembly factor 1 subunit FAS2 isoform X1 [Cucumis sativus]	[more]
gi\|1021050929\|gb\|KZN08707.1\|	1.9e-30	76.67	hypothetical protein DCAR_001363 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0048366	leaf development
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0009555	pollen development
biological_process	GO:0010026	trichome differentiation
cellular_component	GO:0033186	CAF-1 complex
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G015490.1	ClCG01G015490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 11..40 score: 0.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 3..41 score: 0.05coord: 53..91 score:
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 16..50 score: 10
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 13..77 score: 1.1
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 9..50 score: 9
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 10..81 score: 1.7
None	No IPR available	PANTHER	PTHR15271	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	coord: 2..78 score: 1.2
None	No IPR available	PANTHER	PTHR15271:SF4	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	coord: 2..78 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G015490	Silver-seed gourd	carwcgB0230
ClCG01G015490	Silver-seed gourd	carwcgB0778
ClCG01G015490	Cucumber (Chinese Long) v3	cucwcgB455
ClCG01G015490	Watermelon (97103) v2	wcgwmbB089
ClCG01G015490	Wax gourd	wcgwgoB225
ClCG01G015490	Cucumber (Gy14) v1	cgywcgB134
ClCG01G015490	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G015490	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G015490	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G015490	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G015490	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G015490	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G015490	Melon (DHL92) v3.5.1	mewcgB516
ClCG01G015490	Watermelon (97103) v1	wcgwmB153
ClCG01G015490	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G015490	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G015490	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G015490	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G015490	Melon (DHL92) v3.6.1	medwcgB511